Wall clock time and date at job start Wed Apr 1 2020 00:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47079 * 2 1 4 4 C 1.50696 * 109.46968 * 240.00377 * 2 1 3 5 5 H 1.08002 * 119.99773 * 240.00162 * 4 2 1 6 6 C 1.37877 * 120.00342 * 59.99553 * 4 2 1 7 7 N 1.31513 * 119.99732 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00172 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47086 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46716 * 120.00175 * 8 6 4 11 11 H 1.48498 * 109.46889 * 240.00264 * 8 6 4 12 12 N 1.46498 * 109.47356 * 119.99905 * 2 1 3 13 13 C 1.34768 * 120.00338 * 275.00016 * 12 2 1 14 14 O 1.21286 * 119.99785 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00292 * 179.97438 * 13 12 2 16 16 C 1.53005 * 109.47224 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.46981 * 179.97438 * 16 15 13 18 18 C 1.52999 * 109.47082 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.47326 * 180.02562 * 18 17 16 20 20 H 1.08994 * 110.70200 * 56.87062 * 19 18 17 21 21 S 1.84561 * 110.78811 * 293.54375 * 19 18 17 22 22 C 1.84863 * 96.96595 * 235.13671 * 21 19 18 23 23 C 1.52262 * 100.34750 * 335.64474 * 22 21 19 24 24 H 1.09002 * 110.05586 * 289.55580 * 23 22 21 25 25 N 1.44520 * 122.65452 * 157.67862 * 23 22 21 26 26 C 1.35609 * 106.01381 * 213.86593 * 25 23 22 27 27 O 1.21588 * 123.82313 * 194.43246 * 26 25 23 28 28 N 1.36848 * 112.49748 * 14.49637 * 26 25 23 29 29 C 1.43254 * 104.99073 * 13.51215 * 28 26 25 30 30 H 1.09001 * 106.53330 * 77.17482 * 29 28 26 31 31 H 1.08999 * 109.46896 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46780 * 300.00135 * 1 2 3 33 33 H 1.09005 * 109.47387 * 59.99722 * 1 2 3 34 34 H 0.97006 * 119.99855 * 179.97438 * 7 6 4 35 35 H 0.96995 * 119.99852 * 94.99859 * 12 2 1 36 36 H 1.09003 * 109.47139 * 60.00146 * 15 13 12 37 37 H 1.08999 * 109.47040 * 300.00263 * 15 13 12 38 38 H 1.09003 * 109.46853 * 60.00081 * 16 15 13 39 39 H 1.08999 * 109.47416 * 300.00143 * 16 15 13 40 40 H 1.09003 * 109.47203 * 60.00366 * 17 16 15 41 41 H 1.08999 * 109.47219 * 300.00334 * 17 16 15 42 42 H 1.09000 * 109.47435 * 59.99630 * 18 17 16 43 43 H 1.08999 * 109.47121 * 300.00094 * 18 17 16 44 44 H 1.08995 * 111.23545 * 217.86373 * 22 21 19 45 45 H 1.09001 * 111.23494 * 93.41943 * 22 21 19 46 46 H 0.97001 * 127.28075 * 34.11523 * 25 23 22 47 47 H 0.96996 * 127.51294 * 193.53603 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6033 8 14 2.3224 -1.1194 -4.0080 9 1 3.1474 -2.2862 -3.6039 10 1 1.1676 -1.5865 -4.8165 11 1 3.1471 -0.1856 -4.8161 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1584 2.4117 15 6 2.6490 -0.7288 3.5876 16 6 2.7012 0.2545 4.7587 17 6 3.2101 -0.4671 6.0082 18 6 3.2617 0.5160 7.1794 19 6 3.7712 -0.2054 8.4288 20 1 4.7473 -0.6538 8.2437 21 16 2.5600 -1.4803 8.9888 22 6 2.3697 -0.8633 10.7210 23 6 3.6924 -0.1300 10.8969 24 1 4.5122 -0.8461 10.9539 25 7 3.8797 0.9165 11.8759 26 6 4.7458 1.7991 11.3191 27 8 5.3239 2.6665 11.9450 28 7 4.8965 1.6063 9.9727 29 6 3.8243 0.7319 9.6012 30 1 2.9243 1.3454 9.5588 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 0.7093 1.1619 -3.4844 35 1 2.2491 -1.6317 1.1526 36 1 3.6481 -1.1214 3.3985 37 1 1.9761 -1.5506 3.8325 38 1 1.7022 0.6474 4.9480 39 1 3.3743 1.0760 4.5136 40 1 4.2090 -0.8603 5.8192 41 1 2.5367 -1.2884 6.2531 42 1 2.2627 0.9090 7.3683 43 1 3.9350 1.3376 6.9347 44 1 2.2791 -1.6891 11.4265 45 1 1.5249 -0.1797 10.8060 46 1 3.4743 0.9781 12.7550 47 1 5.5806 1.9800 9.3955 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356437294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:26 Heat of formation + Delta-G solvation = -85.120569 kcal Electronic energy + Delta-G solvation = -26451.644079 eV Core-core repulsion = 22566.484581 eV Total energy + Delta-G solvation = -3885.159498 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.67688 -40.53751 -38.62884 -37.11753 -36.51716 -34.51394 -34.28325 -33.88306 -32.06723 -30.80255 -28.60600 -27.33920 -25.65564 -23.81967 -23.00133 -22.63804 -22.36058 -21.72028 -20.99720 -18.84524 -18.75051 -18.43598 -17.57654 -17.35753 -17.14199 -16.86128 -16.72330 -16.33318 -15.95287 -15.77089 -15.43211 -15.22653 -14.86028 -14.64455 -14.43301 -14.09981 -13.86811 -13.65337 -13.30003 -13.17539 -12.96276 -12.91789 -12.79829 -12.68730 -12.61083 -12.27763 -12.11537 -12.10956 -11.95795 -11.84107 -11.69752 -11.51479 -11.08547 -11.01972 -10.68318 -10.63715 -10.52373 -9.88033 -9.69752 -8.75176 -8.17391 -6.34968 0.55201 1.01716 1.44520 1.45329 1.57595 1.66837 1.82120 1.91843 2.37060 2.61417 2.73437 3.03024 3.12994 3.43567 3.66543 3.82510 3.87265 3.99910 4.07821 4.15340 4.24856 4.43426 4.46592 4.58931 4.61422 4.66023 4.74132 4.79445 4.83386 4.87918 4.93062 5.00007 5.03418 5.11394 5.24683 5.43595 5.45552 5.54603 5.63899 5.71620 5.86039 5.93210 6.00566 6.11528 6.29821 6.74259 7.03878 7.33632 7.37859 7.64455 8.89134 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028044 B = 0.001598 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.190753 B =17518.760968 C =17903.224549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.267 3.733 3 H -0.005 1.005 4 C -0.545 4.545 5 H 0.074 0.926 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.258 1.258 10 H -0.279 1.279 11 H -0.284 1.284 12 N -0.709 5.709 13 C 0.490 3.510 14 O -0.607 6.607 15 C -0.128 4.128 16 C -0.097 4.097 17 C -0.107 4.107 18 C -0.102 4.102 19 C -0.018 4.018 20 H 0.124 0.876 21 S -0.266 6.266 22 C -0.062 4.062 23 C 0.108 3.892 24 H 0.102 0.898 25 N -0.717 5.717 26 C 0.705 3.295 27 O -0.610 6.610 28 N -0.719 5.719 29 C 0.101 3.899 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.011 0.989 33 H 0.065 0.935 34 H 0.265 0.735 35 H 0.405 0.595 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.137 0.863 45 H 0.110 0.890 46 H 0.440 0.560 47 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.630 -8.979 29.119 30.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.163 3.837 3 H 0.013 0.987 4 C -0.583 4.583 5 H 0.092 0.908 6 C -0.189 4.189 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.182 1.182 10 H -0.205 1.205 11 H -0.210 1.210 12 N -0.358 5.358 13 C 0.278 3.722 14 O -0.490 6.490 15 C -0.168 4.168 16 C -0.135 4.135 17 C -0.145 4.145 18 C -0.141 4.141 19 C -0.147 4.147 20 H 0.142 0.858 21 S -0.039 6.039 22 C -0.211 4.211 23 C -0.001 4.001 24 H 0.119 0.881 25 N -0.382 5.382 26 C 0.405 3.595 27 O -0.487 6.487 28 N -0.384 5.384 29 C -0.008 4.008 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.030 0.970 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.241 0.759 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.155 0.845 45 H 0.129 0.871 46 H 0.284 0.716 47 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 5.118 -8.548 28.759 30.436 hybrid contribution 0.637 0.928 -0.566 1.259 sum 5.754 -7.620 28.193 29.767 Atomic orbital electron populations 1.21889 0.98451 0.99406 0.99427 1.18321 0.91074 0.91865 0.82408 0.98725 1.21596 1.32407 1.13485 0.90808 0.90759 1.25846 0.94929 0.95624 1.02470 1.70070 1.37148 1.24017 1.24510 0.85268 0.78071 0.78508 0.78299 1.18219 1.20468 1.21048 1.46334 1.65312 1.14271 1.09911 1.21697 0.77215 0.87193 0.86049 1.90624 1.53404 1.18819 1.86155 1.21715 1.04314 0.99809 0.90921 1.21234 1.01406 0.97411 0.93461 1.21525 1.02415 0.98020 0.92537 1.21671 1.02248 0.98139 0.92081 1.22968 1.01373 0.94951 0.95426 0.85770 1.88646 1.59952 1.41819 1.13487 1.23917 0.98129 1.03975 0.95088 1.22550 0.99363 0.91005 0.87160 0.88059 1.44831 1.50249 1.23211 1.19913 1.17231 0.79195 0.80948 0.82129 1.90965 1.53382 1.38283 1.66118 1.44801 1.33575 1.52830 1.07235 1.21608 0.91474 0.93081 0.94642 0.91231 0.94042 0.97035 0.91666 0.92601 0.75946 0.86812 0.86893 0.93130 0.92892 0.90241 0.90905 0.91081 0.90086 0.84531 0.87115 0.71581 0.71867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.81 9.26 71.98 0.67 -6.14 16 2 C 0.27 13.95 2.56 44.24 0.11 14.06 16 3 H -0.01 -0.32 7.58 -2.38 -0.02 -0.34 16 4 C -0.54 -28.81 8.73 25.60 0.22 -28.59 16 5 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.60 5.30 84.65 0.45 1.04 16 7 N -0.92 -53.04 11.32 21.45 0.24 -52.80 16 8 Si 0.97 41.85 29.54 68.60 2.03 43.88 16 9 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 10 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 N -0.71 -28.92 5.07 -446.11 -2.26 -31.18 16 13 C 0.49 18.84 7.79 87.66 0.68 19.52 16 14 O -0.61 -29.51 15.65 -3.05 -0.05 -29.56 16 15 C -0.13 -3.04 5.70 29.85 0.17 -2.87 16 16 C -0.10 -2.16 4.50 30.60 0.14 -2.02 16 17 C -0.11 -1.49 5.08 30.59 0.16 -1.33 16 18 C -0.10 -1.18 4.68 30.59 0.14 -1.04 16 19 C -0.02 -0.15 3.20 29.69 0.09 -0.06 16 20 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 21 S -0.27 -2.62 21.81 -56.49 -1.23 -3.85 16 22 C -0.06 -0.27 7.24 71.74 0.52 0.25 16 23 C 0.11 0.70 3.63 46.22 0.17 0.86 16 24 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 25 N -0.72 -6.78 6.47 -454.61 -2.94 -9.72 16 26 C 0.70 12.00 8.78 178.13 1.56 13.56 16 27 O -0.61 -16.31 18.05 -3.99 -0.07 -16.39 16 28 N -0.72 -8.45 6.56 -459.46 -3.01 -11.47 16 29 C 0.10 0.90 2.78 45.79 0.13 1.02 16 30 H 0.07 0.75 7.72 -2.39 -0.02 0.73 16 31 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.06 3.66 6.07 -2.38 -0.01 3.65 16 34 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 35 H 0.41 13.59 8.54 -92.71 -0.79 12.80 16 36 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.05 1.31 8.10 -2.39 -0.02 1.30 16 39 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 1.01 7.31 -2.39 -0.02 1.00 16 42 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 43 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.14 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.44 2.58 8.96 -92.71 -0.83 1.75 16 47 H 0.44 4.18 8.96 -92.71 -0.83 3.35 16 Total: -1.00 -77.46 391.91 -3.53 -80.99 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -1.45 Total: 21.82 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 5.21 Total: 8.28 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -7.97 Total: -105.17 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -0.12 Total: -45.95 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -1.23 Total: -3.85 kcal Total: -77.46 -3.53 -80.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356437294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.127 kcal (2) G-P(sol) polarization free energy of solvation -77.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds