Wall clock time and date at job start Wed Apr 1 2020 01:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45196 * 109.47027 * 2 1 4 4 C 1.34236 * 116.99952 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99596 * 0.02562 * 4 3 2 6 6 C 1.50692 * 120.00182 * 179.97438 * 4 3 2 7 7 H 1.09001 * 110.32609 * 26.74723 * 6 4 3 8 8 C 1.54909 * 110.36897 * 264.51218 * 6 4 3 9 9 C 1.55272 * 101.53028 * 204.23254 * 8 6 4 10 10 C 1.54330 * 103.00867 * 35.35908 * 9 8 6 11 11 H 1.08997 * 109.87740 * 97.30247 * 10 9 8 12 12 C 1.50692 * 110.01327 * 218.39870 * 10 9 8 13 13 O 1.20823 * 119.99913 * 117.88934 * 12 10 9 14 14 O 1.34234 * 120.00039 * 297.88152 * 12 10 9 15 15 C 1.45205 * 116.99930 * 180.02562 * 14 12 10 16 16 C 1.52998 * 109.46829 * 180.02562 * 15 14 12 17 17 N 1.47026 * 107.26823 * 337.88859 * 10 9 8 18 18 C 1.34778 * 125.64598 * 178.95766 * 17 10 9 19 19 O 1.21280 * 119.99881 * 183.38160 * 18 17 10 20 20 C 1.50697 * 120.00067 * 3.38114 * 18 17 10 21 21 C 1.52995 * 109.46939 * 179.97438 * 20 18 17 22 22 C 1.50701 * 109.47269 * 180.02562 * 21 20 18 23 23 H 1.08010 * 119.99860 * 359.97438 * 22 21 20 24 24 C 1.37873 * 120.00586 * 180.02562 * 22 21 20 25 25 N 1.31521 * 119.99509 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00291 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47028 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.46888 * 119.99377 * 26 24 22 29 29 H 1.48494 * 109.47039 * 239.99280 * 26 24 22 30 30 H 1.08994 * 109.47402 * 59.99996 * 1 2 3 31 31 H 1.09002 * 109.46915 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47101 * 299.99689 * 1 2 3 33 33 H 1.09003 * 109.47200 * 119.99875 * 2 1 3 34 34 H 1.08998 * 109.47189 * 239.99907 * 2 1 3 35 35 H 1.08998 * 111.00476 * 322.22721 * 8 6 4 36 36 H 1.09004 * 111.00391 * 86.07664 * 8 6 4 37 37 H 1.09005 * 110.62186 * 277.01282 * 9 8 6 38 38 H 1.08997 * 110.91558 * 153.84723 * 9 8 6 39 39 H 1.08995 * 109.46617 * 300.00018 * 15 14 12 40 40 H 1.08996 * 109.46662 * 60.00491 * 15 14 12 41 41 H 1.09003 * 109.47112 * 59.99763 * 16 15 14 42 42 H 1.08997 * 109.46927 * 179.97438 * 16 15 14 43 43 H 1.09003 * 109.47066 * 300.00125 * 16 15 14 44 44 H 1.09000 * 109.47309 * 300.00098 * 20 18 17 45 45 H 1.09002 * 109.46909 * 60.00011 * 20 18 17 46 46 H 1.09000 * 109.47401 * 300.00287 * 21 20 18 47 47 H 1.09002 * 109.47111 * 60.00380 * 21 20 18 48 48 H 0.97000 * 119.99448 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9373 -0.0012 7 1 3.2222 3.6362 0.4589 8 6 4.2546 3.3820 -1.4470 9 6 5.3506 4.4532 -1.1969 10 6 6.1154 3.8902 0.0195 11 1 7.0073 3.3610 -0.3160 12 6 6.5040 5.0114 0.9484 13 8 6.0734 5.0376 2.0770 14 8 7.3286 5.9810 0.5220 15 6 7.6603 7.0288 1.4709 16 6 8.6030 8.0361 0.8094 17 7 5.2116 2.9589 0.7105 18 6 5.5132 2.2437 1.8124 19 8 4.7080 1.4574 2.2641 20 6 6.8510 2.4212 2.4831 21 6 6.9368 1.4998 3.7014 22 6 8.2744 1.6776 4.3725 23 1 8.9917 2.3776 3.9700 24 6 8.5829 0.9461 5.4998 25 7 7.7096 0.0934 5.9896 26 14 10.2412 1.1661 6.3312 27 1 11.0367 2.1769 5.5891 28 1 10.0372 1.6248 7.7288 29 1 10.9680 -0.1288 6.3363 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 4.6486 2.5500 -2.0305 36 1 3.3822 3.8193 -1.9326 37 1 4.8989 5.4157 -0.9566 38 1 6.0107 4.5432 -2.0596 39 1 6.7484 7.5368 1.7846 40 1 8.1494 6.5899 2.3405 41 1 8.1135 8.4749 -0.0602 42 1 8.8516 8.8229 1.5215 43 1 9.5149 7.5283 0.4952 44 1 7.6458 2.1703 1.7806 45 1 6.9625 3.4572 2.8029 46 1 6.1421 1.7511 4.4038 47 1 6.8252 0.4636 3.3819 48 1 7.9265 -0.4210 6.7829 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362226382.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:11 Heat of formation + Delta-G solvation = -203.714570 kcal Electronic energy + Delta-G solvation = -31493.360218 eV Core-core repulsion = 27128.012477 eV Total energy + Delta-G solvation = -4365.347742 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.33203 -40.30713 -39.07194 -37.35250 -36.63801 -36.21919 -33.39777 -32.13005 -32.01143 -31.67546 -30.77854 -30.14600 -26.11414 -25.29374 -23.56142 -23.17764 -22.28878 -22.02967 -21.13010 -20.45679 -18.78408 -18.33517 -17.55989 -17.24045 -16.71409 -16.49496 -16.36561 -15.99981 -15.55886 -15.23471 -14.66711 -14.40886 -14.28970 -14.15311 -14.01840 -13.56889 -13.35552 -13.19218 -12.93675 -12.92755 -12.58236 -12.45677 -12.28578 -12.08689 -12.05011 -11.92530 -11.71970 -11.68978 -11.60560 -11.36123 -11.06802 -10.91051 -10.62202 -10.53919 -10.48883 -10.45789 -10.25393 -9.76555 -9.56610 -9.16258 -8.97931 -8.74563 -8.25801 -5.90019 -3.93806 2.07743 2.13399 2.43952 2.62099 3.17592 3.33571 3.35952 3.42305 3.46080 4.00320 4.08184 4.44450 4.51859 4.60832 4.73308 4.80176 4.84809 4.87499 4.90427 4.95937 5.00164 5.15618 5.23331 5.25665 5.34730 5.43797 5.44198 5.44874 5.55562 5.61621 5.62864 5.69244 5.72542 5.78394 5.86095 6.13887 6.27014 6.28475 6.50130 6.55061 6.96350 7.52515 7.76777 7.80779 7.93887 7.95298 8.14190 8.44439 8.69386 9.13865 9.68788 11.21218 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007321 B = 0.004449 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3823.690616 B = 6292.605596 C = 9680.267105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.361 6.361 4 C 0.465 3.535 5 O -0.476 6.476 6 C 0.143 3.857 7 H 0.106 0.894 8 C -0.119 4.119 9 C -0.112 4.112 10 C 0.148 3.852 11 H 0.122 0.878 12 C 0.445 3.555 13 O -0.476 6.476 14 O -0.357 6.357 15 C 0.060 3.940 16 C -0.151 4.151 17 N -0.604 5.604 18 C 0.543 3.457 19 O -0.510 6.510 20 C -0.133 4.133 21 C 0.040 3.960 22 C -0.522 4.522 23 H 0.054 0.946 24 C 0.058 3.942 25 N -0.890 5.890 26 Si 0.892 3.108 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.284 1.284 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.097 0.903 46 H 0.023 0.977 47 H 0.023 0.977 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.255 13.417 -20.567 25.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.010 4.010 3 O -0.278 6.278 4 C 0.305 3.695 5 O -0.360 6.360 6 C 0.038 3.962 7 H 0.123 0.877 8 C -0.157 4.157 9 C -0.150 4.150 10 C 0.041 3.959 11 H 0.140 0.860 12 C 0.284 3.716 13 O -0.361 6.361 14 O -0.273 6.273 15 C -0.014 4.014 16 C -0.208 4.208 17 N -0.344 5.344 18 C 0.335 3.665 19 O -0.382 6.382 20 C -0.173 4.173 21 C 0.003 3.997 22 C -0.560 4.560 23 H 0.073 0.927 24 C -0.144 4.144 25 N -0.528 5.528 26 Si 0.720 3.280 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.210 1.210 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.115 0.885 46 H 0.042 0.958 47 H 0.041 0.959 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.615 12.471 -19.676 24.838 hybrid contribution 0.951 -0.021 0.870 1.290 sum -7.664 12.450 -18.806 23.820 Atomic orbital electron populations 1.21792 0.92767 1.02849 1.03314 1.22994 0.95039 0.80187 1.02828 1.86417 1.24339 1.32538 1.84516 1.23187 0.80878 0.92100 0.73342 1.90703 1.60161 1.42397 1.42763 1.21355 0.87972 0.91917 0.94937 0.87652 1.22846 1.00002 0.99525 0.93334 1.22615 0.97393 0.98881 0.96138 1.21091 0.96495 0.87730 0.90574 0.86049 1.24015 0.76536 0.82832 0.88186 1.90738 1.50927 1.74526 1.19931 1.86457 1.60962 1.34489 1.45429 1.23074 0.99619 0.87039 0.91676 1.21796 0.99431 0.97857 1.01693 1.48580 1.12400 1.44174 1.29272 1.21400 0.90892 0.77343 0.76863 1.90685 1.51060 1.34456 1.61996 1.22133 0.90198 1.04809 1.00143 1.18885 0.97000 0.93941 0.89915 1.21215 1.00673 1.23101 1.11042 0.92736 1.25017 0.96962 0.95259 0.97132 1.70022 1.34619 1.25455 1.22747 0.86540 0.84180 0.77872 0.79406 1.19785 1.21009 1.21001 0.91711 0.90325 0.91426 0.90827 0.91484 0.89150 0.88004 0.89401 0.87628 0.91247 0.90645 0.91648 0.90280 0.91347 0.90834 0.88519 0.95835 0.95876 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.29 37.16 0.38 -0.96 16 2 C 0.06 0.81 6.19 37.16 0.23 1.04 16 3 O -0.36 -5.29 10.22 -39.27 -0.40 -5.69 16 4 C 0.47 7.70 5.78 36.00 0.21 7.91 16 5 O -0.48 -9.67 14.70 -26.02 -0.38 -10.05 16 6 C 0.14 1.94 3.66 -67.57 -0.25 1.69 16 7 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 8 C -0.12 -0.96 6.50 -24.52 -0.16 -1.12 16 9 C -0.11 -0.81 6.45 -24.83 -0.16 -0.97 16 10 C 0.15 1.78 3.19 -68.10 -0.22 1.56 16 11 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 12 C 0.44 6.13 6.32 36.00 0.23 6.36 16 13 O -0.48 -8.51 13.06 -18.75 -0.24 -8.76 16 14 O -0.36 -4.10 10.20 -39.27 -0.40 -4.50 16 15 C 0.06 0.62 6.19 37.16 0.23 0.84 16 16 C -0.15 -1.08 10.29 37.16 0.38 -0.69 16 17 N -0.60 -9.99 2.63 -158.19 -0.42 -10.40 16 18 C 0.54 12.09 6.62 -10.99 -0.07 12.02 16 19 O -0.51 -13.36 13.76 -16.27 -0.22 -13.58 16 20 C -0.13 -3.12 4.41 -27.89 -0.12 -3.25 16 21 C 0.04 1.18 4.26 -27.88 -0.12 1.06 16 22 C -0.52 -15.70 9.11 -34.44 -0.31 -16.02 16 23 H 0.05 1.56 7.74 -52.48 -0.41 1.15 16 24 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 25 N -0.89 -28.56 13.29 55.43 0.74 -27.83 16 26 Si 0.89 22.48 29.54 -169.99 -5.02 17.46 16 27 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 28 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.09 8.13 -51.93 -0.42 0.66 16 34 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 35 H 0.09 0.74 8.05 -51.93 -0.42 0.32 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.55 7.85 -51.93 -0.41 0.15 16 38 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 40 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 45 H 0.10 2.23 5.12 -51.93 -0.27 1.96 16 46 H 0.02 0.75 8.10 -51.93 -0.42 0.33 16 47 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 48 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 398.81 15.07 6.01 6.01 Total: -1.00 -40.74 398.81 -8.01 -48.75 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -7.81 Total: -2.53 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: 0.15 Total: 11.12 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.32 Total: -38.23 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -1.65 Total: -42.58 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -40.74 -8.01 -48.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362226382.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.968 kcal (2) G-P(sol) polarization free energy of solvation -40.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds