Wall clock time and date at job start Wed Apr 1 2020 01:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45196 * 109.47027 * 2 1 4 4 C 1.34236 * 116.99952 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99596 * 0.02562 * 4 3 2 6 6 C 1.50692 * 120.00182 * 179.97438 * 4 3 2 7 7 H 1.09001 * 110.32609 * 26.74723 * 6 4 3 8 8 C 1.54909 * 110.36897 * 264.51218 * 6 4 3 9 9 C 1.55272 * 101.53028 * 204.23254 * 8 6 4 10 10 C 1.54330 * 103.00867 * 35.35908 * 9 8 6 11 11 H 1.08997 * 109.87740 * 97.30247 * 10 9 8 12 12 C 1.50692 * 110.01327 * 218.39870 * 10 9 8 13 13 O 1.20823 * 119.99913 * 117.88934 * 12 10 9 14 14 O 1.34234 * 120.00039 * 297.88152 * 12 10 9 15 15 C 1.45205 * 116.99930 * 180.02562 * 14 12 10 16 16 C 1.52998 * 109.46829 * 180.02562 * 15 14 12 17 17 N 1.47026 * 107.26823 * 337.88859 * 10 9 8 18 18 C 1.34778 * 125.64598 * 178.95766 * 17 10 9 19 19 O 1.21280 * 119.99881 * 183.38160 * 18 17 10 20 20 C 1.50697 * 120.00067 * 3.38114 * 18 17 10 21 21 C 1.52995 * 109.46939 * 179.97438 * 20 18 17 22 22 C 1.50701 * 109.47269 * 180.02562 * 21 20 18 23 23 H 1.08010 * 119.99860 * 359.97438 * 22 21 20 24 24 C 1.37873 * 120.00586 * 180.02562 * 22 21 20 25 25 N 1.31521 * 119.99509 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00291 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47028 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.46888 * 119.99377 * 26 24 22 29 29 H 1.48494 * 109.47039 * 239.99280 * 26 24 22 30 30 H 1.08994 * 109.47402 * 59.99996 * 1 2 3 31 31 H 1.09002 * 109.46915 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47101 * 299.99689 * 1 2 3 33 33 H 1.09003 * 109.47200 * 119.99875 * 2 1 3 34 34 H 1.08998 * 109.47189 * 239.99907 * 2 1 3 35 35 H 1.08998 * 111.00476 * 322.22721 * 8 6 4 36 36 H 1.09004 * 111.00391 * 86.07664 * 8 6 4 37 37 H 1.09005 * 110.62186 * 277.01282 * 9 8 6 38 38 H 1.08997 * 110.91558 * 153.84723 * 9 8 6 39 39 H 1.08995 * 109.46617 * 300.00018 * 15 14 12 40 40 H 1.08996 * 109.46662 * 60.00491 * 15 14 12 41 41 H 1.09003 * 109.47112 * 59.99763 * 16 15 14 42 42 H 1.08997 * 109.46927 * 179.97438 * 16 15 14 43 43 H 1.09003 * 109.47066 * 300.00125 * 16 15 14 44 44 H 1.09000 * 109.47309 * 300.00098 * 20 18 17 45 45 H 1.09002 * 109.46909 * 60.00011 * 20 18 17 46 46 H 1.09000 * 109.47401 * 300.00287 * 21 20 18 47 47 H 1.09002 * 109.47111 * 60.00380 * 21 20 18 48 48 H 0.97000 * 119.99448 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9373 -0.0012 7 1 3.2222 3.6362 0.4589 8 6 4.2546 3.3820 -1.4470 9 6 5.3506 4.4532 -1.1969 10 6 6.1154 3.8902 0.0195 11 1 7.0073 3.3610 -0.3160 12 6 6.5040 5.0114 0.9484 13 8 6.0734 5.0376 2.0770 14 8 7.3286 5.9810 0.5220 15 6 7.6603 7.0288 1.4709 16 6 8.6030 8.0361 0.8094 17 7 5.2116 2.9589 0.7105 18 6 5.5132 2.2437 1.8124 19 8 4.7080 1.4574 2.2641 20 6 6.8510 2.4212 2.4831 21 6 6.9368 1.4998 3.7014 22 6 8.2744 1.6776 4.3725 23 1 8.9917 2.3776 3.9700 24 6 8.5829 0.9461 5.4998 25 7 7.7096 0.0934 5.9896 26 14 10.2412 1.1661 6.3312 27 1 11.0367 2.1769 5.5891 28 1 10.0372 1.6248 7.7288 29 1 10.9680 -0.1288 6.3363 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 4.6486 2.5500 -2.0305 36 1 3.3822 3.8193 -1.9326 37 1 4.8989 5.4157 -0.9566 38 1 6.0107 4.5432 -2.0596 39 1 6.7484 7.5368 1.7846 40 1 8.1494 6.5899 2.3405 41 1 8.1135 8.4749 -0.0602 42 1 8.8516 8.8229 1.5215 43 1 9.5149 7.5283 0.4952 44 1 7.6458 2.1703 1.7806 45 1 6.9625 3.4572 2.8029 46 1 6.1421 1.7511 4.4038 47 1 6.8252 0.4636 3.3819 48 1 7.9265 -0.4210 6.7829 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362226382.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:10 Heat of formation + Delta-G solvation = -230.851385 kcal Electronic energy + Delta-G solvation = -31494.536959 eV Core-core repulsion = 27128.012477 eV Total energy + Delta-G solvation = -4366.524483 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.53633 -41.48220 -40.44590 -38.72650 -37.77176 -37.44786 -35.66629 -33.52721 -32.98066 -32.68938 -32.39255 -31.20964 -27.98774 -26.60825 -24.60358 -24.38439 -23.50456 -23.03985 -22.39589 -21.86106 -20.15964 -19.46382 -19.10205 -18.62240 -18.04720 -17.78242 -17.63463 -17.50514 -16.81016 -16.53547 -16.43191 -16.25987 -15.33231 -15.25761 -15.11002 -14.64091 -14.53196 -14.45362 -14.29868 -14.07765 -13.69918 -13.63193 -13.44988 -13.31055 -13.17671 -13.03656 -12.94958 -12.80251 -12.77872 -12.55825 -12.49797 -12.44176 -12.13931 -11.88426 -11.76397 -11.62154 -11.58606 -11.45326 -11.41863 -11.35139 -10.92599 -10.64635 -10.09318 -8.24610 -6.40366 0.90407 1.05078 1.27147 1.35697 1.39009 1.39446 1.52389 1.84299 1.90873 2.37440 3.07525 3.10599 3.24614 3.60849 3.63918 3.79885 3.92353 3.93718 4.00456 4.04573 4.06477 4.13772 4.23509 4.27539 4.28983 4.38880 4.42688 4.60178 4.71764 4.78513 4.84085 4.88071 4.90941 4.97991 5.00203 5.03979 5.08993 5.13866 5.19515 5.36820 5.40420 5.45306 5.50666 5.74193 6.03382 6.08838 6.63965 6.69601 6.75881 7.02738 7.29734 8.88934 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007321 B = 0.004449 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3823.690616 B = 6292.605596 C = 9680.267105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.055 3.945 3 O -0.358 6.358 4 C 0.460 3.540 5 O -0.524 6.524 6 C 0.131 3.869 7 H 0.118 0.882 8 C -0.103 4.103 9 C -0.095 4.095 10 C 0.133 3.867 11 H 0.140 0.860 12 C 0.450 3.550 13 O -0.526 6.526 14 O -0.342 6.342 15 C 0.051 3.949 16 C -0.142 4.142 17 N -0.601 5.601 18 C 0.540 3.460 19 O -0.567 6.567 20 C -0.121 4.121 21 C 0.051 3.949 22 C -0.544 4.544 23 H 0.071 0.929 24 C -0.006 4.006 25 N -0.937 5.937 26 Si 0.980 3.020 27 H -0.252 1.252 28 H -0.277 1.277 29 H -0.275 1.275 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.143 0.857 37 H 0.104 0.896 38 H 0.148 0.852 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.103 0.897 46 H -0.024 1.024 47 H -0.021 1.021 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.086 16.275 -23.593 29.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.019 4.019 3 O -0.275 6.275 4 C 0.302 3.698 5 O -0.411 6.411 6 C 0.027 3.973 7 H 0.135 0.865 8 C -0.140 4.140 9 C -0.133 4.133 10 C 0.028 3.972 11 H 0.157 0.843 12 C 0.292 3.708 13 O -0.415 6.415 14 O -0.258 6.258 15 C -0.022 4.022 16 C -0.199 4.199 17 N -0.338 5.338 18 C 0.331 3.669 19 O -0.444 6.444 20 C -0.160 4.160 21 C 0.013 3.987 22 C -0.582 4.582 23 H 0.089 0.911 24 C -0.204 4.204 25 N -0.577 5.577 26 Si 0.802 3.198 27 H -0.176 1.176 28 H -0.202 1.202 29 H -0.201 1.201 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.161 0.839 37 H 0.123 0.877 38 H 0.166 0.834 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.087 0.913 44 H 0.112 0.888 45 H 0.121 0.879 46 H -0.005 1.005 47 H -0.002 1.002 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.446 15.408 -22.792 28.501 hybrid contribution 0.521 -0.884 1.787 2.061 sum -6.925 14.524 -21.005 26.460 Atomic orbital electron populations 1.21802 0.89447 1.04468 1.03986 1.23238 0.97611 0.79322 1.01708 1.86428 1.23547 1.33556 1.83957 1.23918 0.81093 0.92949 0.71828 1.90678 1.61184 1.44117 1.45124 1.21910 0.86564 0.90283 0.98502 0.86464 1.22983 1.01938 0.99903 0.89210 1.22783 0.97039 0.98676 0.94753 1.21689 0.97311 0.86738 0.91434 0.84266 1.24353 0.75738 0.83150 0.87558 1.90732 1.52963 1.75779 1.22061 1.86467 1.59881 1.34183 1.45272 1.23310 1.00348 0.87101 0.91471 1.21802 0.98574 0.97151 1.02395 1.48311 1.14615 1.43284 1.27638 1.20967 0.89898 0.77618 0.78369 1.90654 1.52291 1.37182 1.64298 1.21834 0.92367 1.03393 0.98420 1.18608 0.95772 0.92767 0.91513 1.21621 1.01026 1.23774 1.11775 0.91070 1.26210 1.02030 0.94356 0.97786 1.70207 1.37563 1.26506 1.23426 0.85193 0.77927 0.78573 0.78064 1.17575 1.20237 1.20055 0.89700 0.88248 0.91971 0.94140 0.90545 0.88928 0.83857 0.87714 0.83397 0.91069 0.92713 0.90102 0.88785 0.91297 0.88774 0.87894 1.00516 1.00211 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 10.29 71.98 0.74 -1.66 16 2 C 0.05 1.45 6.19 71.98 0.45 1.90 16 3 O -0.36 -10.69 10.22 -51.47 -0.53 -11.22 16 4 C 0.46 15.63 5.78 71.23 0.41 16.04 16 5 O -0.52 -22.44 14.70 28.92 0.43 -22.02 16 6 C 0.13 3.43 3.66 44.72 0.16 3.59 16 7 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 8 C -0.10 -1.24 6.50 32.03 0.21 -1.03 16 9 C -0.10 -0.91 6.45 31.83 0.21 -0.70 16 10 C 0.13 2.90 3.19 44.59 0.14 3.05 16 11 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 12 C 0.45 11.79 6.32 71.23 0.45 12.24 16 13 O -0.53 -19.07 13.06 21.97 0.29 -18.78 16 14 O -0.34 -7.06 10.20 -51.45 -0.52 -7.58 16 15 C 0.05 0.98 6.19 71.98 0.45 1.43 16 16 C -0.14 -1.64 10.29 71.98 0.74 -0.90 16 17 N -0.60 -19.91 2.63 -772.79 -2.04 -21.94 16 18 C 0.54 25.43 6.62 87.66 0.58 26.01 16 19 O -0.57 -32.25 13.76 17.84 0.25 -32.00 16 20 C -0.12 -5.94 4.41 29.85 0.13 -5.81 16 21 C 0.05 3.21 4.26 29.85 0.13 3.34 16 22 C -0.54 -33.88 9.11 25.60 0.23 -33.65 16 23 H 0.07 4.09 7.74 -2.91 -0.02 4.07 16 24 C -0.01 -0.40 5.46 84.65 0.46 0.07 16 25 N -0.94 -62.88 13.29 21.45 0.28 -62.59 16 26 Si 0.98 46.68 29.54 68.60 2.03 48.71 16 27 H -0.25 -11.09 7.11 99.48 0.71 -10.39 16 28 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 29 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.04 1.32 8.13 -2.39 -0.02 1.30 16 34 H 0.08 1.84 8.13 -2.39 -0.02 1.82 16 35 H 0.09 1.17 8.05 -2.39 -0.02 1.15 16 36 H 0.14 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.10 0.75 7.85 -2.38 -0.02 0.73 16 38 H 0.15 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.07 1.34 8.13 -2.39 -0.02 1.32 16 40 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 41 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.09 4.13 8.14 -2.39 -0.02 4.11 16 45 H 0.10 4.95 5.12 -2.39 -0.01 4.94 16 46 H -0.02 -1.68 8.10 -2.39 -0.02 -1.69 16 47 H -0.02 -1.44 8.10 -2.39 -0.02 -1.46 16 48 H 0.26 16.42 8.31 -92.71 -0.77 15.65 16 Total: -1.00 -99.31 398.81 6.62 -92.69 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.95 Total: 10.84 kcal Atomic # 6 Polarization: 18.41 SS G_CDS: 5.49 Total: 23.90 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -1.75 Total: -84.54 kcal Atomic # 8 Polarization: -91.51 SS G_CDS: -0.09 Total: -91.61 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -99.31 6.62 -92.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362226382.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.161 kcal (2) G-P(sol) polarization free energy of solvation -99.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds