Wall clock time and date at job start Wed Apr 1 2020 01:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45204 * 109.47227 * 2 1 4 4 C 1.34231 * 117.00131 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99607 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00141 * 179.97438 * 4 3 2 7 7 H 1.09007 * 110.41419 * 333.83632 * 6 4 3 8 8 C 1.54913 * 110.36737 * 96.12750 * 6 4 3 9 9 C 1.55157 * 101.57895 * 155.84667 * 8 6 4 10 10 C 1.54308 * 102.86784 * 324.31179 * 9 8 6 11 11 H 1.08996 * 109.77834 * 141.88462 * 10 9 8 12 12 C 1.50702 * 109.98462 * 263.04488 * 10 9 8 13 13 O 1.20831 * 120.00287 * 117.87153 * 12 10 9 14 14 O 1.34233 * 120.00221 * 297.87937 * 12 10 9 15 15 C 1.45197 * 117.00011 * 180.02562 * 14 12 10 16 16 C 1.53001 * 109.47114 * 179.97438 * 15 14 12 17 17 N 1.47021 * 107.27726 * 22.52264 * 10 9 8 18 18 C 1.34772 * 125.64957 * 180.97708 * 17 10 9 19 19 O 1.21285 * 120.00210 * 174.37848 * 18 17 10 20 20 C 1.50701 * 119.99925 * 354.36977 * 18 17 10 21 21 C 1.53005 * 109.47026 * 180.02562 * 20 18 17 22 22 C 1.50701 * 109.47026 * 180.02562 * 21 20 18 23 23 H 1.08007 * 120.00248 * 0.02562 * 22 21 20 24 24 C 1.37875 * 119.99837 * 180.02562 * 22 21 20 25 25 N 1.31516 * 120.00170 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 119.99852 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47038 * 89.99878 * 26 24 22 28 28 H 1.48502 * 109.46888 * 209.99746 * 26 24 22 29 29 H 1.48501 * 109.46975 * 329.99849 * 26 24 22 30 30 H 1.08994 * 109.47221 * 300.00480 * 1 2 3 31 31 H 1.09001 * 109.46451 * 60.00735 * 1 2 3 32 32 H 1.08998 * 109.47048 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47647 * 239.99228 * 2 1 3 34 34 H 1.09010 * 109.46661 * 119.99161 * 2 1 3 35 35 H 1.08991 * 111.00907 * 273.92446 * 8 6 4 36 36 H 1.08999 * 110.99910 * 37.74470 * 8 6 4 37 37 H 1.09006 * 110.71868 * 82.86653 * 9 8 6 38 38 H 1.08995 * 110.72270 * 205.95805 * 9 8 6 39 39 H 1.09001 * 109.47140 * 299.99015 * 15 14 12 40 40 H 1.08991 * 109.47504 * 59.99520 * 15 14 12 41 41 H 1.08995 * 109.47360 * 179.97438 * 16 15 14 42 42 H 1.09006 * 109.46821 * 300.00212 * 16 15 14 43 43 H 1.09001 * 109.47090 * 59.99445 * 16 15 14 44 44 H 1.09002 * 109.46817 * 60.00842 * 20 18 17 45 45 H 1.09001 * 109.47085 * 300.00278 * 20 18 17 46 46 H 1.09002 * 109.46955 * 60.00535 * 21 20 18 47 47 H 1.08998 * 109.47390 * 300.00298 * 21 20 18 48 48 H 0.97002 * 119.99378 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.2190 3.6389 -0.4512 8 6 4.2694 3.3772 1.4439 9 6 5.3606 4.4501 1.1877 10 6 6.1170 3.8862 -0.0334 11 1 6.3950 4.7000 -0.7030 12 6 7.3501 3.1482 0.4204 13 8 7.4643 1.9666 0.1948 14 8 8.3215 3.8033 1.0753 15 6 9.4805 3.0289 1.4818 16 6 10.4729 3.9392 2.2081 17 7 5.2056 2.9610 -0.7224 18 6 5.4984 2.2478 -1.8279 19 8 4.7038 1.4368 -2.2545 20 6 6.8129 2.4583 -2.5342 21 6 6.8928 1.5323 -3.7496 22 6 8.2075 1.7424 -4.4556 23 1 8.9156 2.4638 -4.0752 24 6 8.5066 1.0135 -5.5871 25 7 7.6442 0.1353 -6.0506 26 14 10.1366 1.2734 -6.4618 27 1 11.1533 0.3487 -5.8990 28 1 9.9690 1.0014 -7.9120 29 1 10.5833 2.6765 -6.2696 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8898 34 1 1.8933 -0.5138 0.8902 35 1 3.4021 3.8127 1.9399 36 1 4.6688 2.5430 2.0206 37 1 4.9070 5.4133 0.9538 38 1 6.0252 4.5371 2.0472 39 1 9.1659 2.2275 2.1502 40 1 9.9586 2.6007 0.6009 41 1 11.3428 3.3578 2.5137 42 1 10.7875 4.7405 1.5394 43 1 9.9951 4.3678 3.0891 44 1 7.6322 2.2336 -1.8514 45 1 6.8871 3.4951 -2.8623 46 1 6.0734 1.7574 -4.4324 47 1 6.8183 0.4954 -3.4220 48 1 7.8549 -0.3777 -6.8465 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362226383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:14 Heat of formation + Delta-G solvation = -204.131795 kcal Electronic energy + Delta-G solvation = -31690.224639 eV Core-core repulsion = 27324.858805 eV Total energy + Delta-G solvation = -4365.365834 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.32498 -40.22470 -39.03958 -37.34862 -36.54177 -36.16624 -33.40819 -32.09540 -32.02085 -31.65383 -30.77903 -30.10941 -26.05617 -25.26729 -23.59387 -23.17874 -22.39030 -21.99036 -21.02314 -20.45492 -18.79221 -18.08195 -17.46743 -17.25239 -16.76771 -16.40731 -16.25954 -16.03348 -15.75973 -15.13616 -14.64455 -14.43989 -14.30092 -14.06526 -13.91919 -13.49959 -13.37827 -13.09261 -13.04815 -12.90643 -12.66773 -12.29123 -12.26507 -12.08998 -12.04650 -11.79322 -11.69872 -11.62977 -11.58165 -11.39855 -11.08511 -10.89338 -10.59725 -10.53013 -10.47386 -10.41677 -10.16405 -9.80213 -9.59719 -9.16971 -8.99643 -8.74210 -8.26152 -5.90312 -3.94342 2.13793 2.20179 2.49123 2.68124 3.15500 3.33648 3.36606 3.41950 3.44753 4.03914 4.10561 4.48742 4.51632 4.57773 4.77885 4.82792 4.83382 4.88561 4.90943 4.98705 5.08907 5.18432 5.23839 5.27767 5.35774 5.40529 5.44405 5.47500 5.58441 5.63307 5.65003 5.70054 5.74477 5.80303 5.87473 6.11893 6.27884 6.31629 6.47215 6.60026 6.93582 7.54670 7.79494 7.82118 7.94692 8.00652 8.13822 8.43746 8.69316 9.13175 9.68271 11.20835 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007655 B = 0.004413 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3656.776511 B = 6343.609149 C = 9340.541454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 O -0.363 6.363 4 C 0.458 3.542 5 O -0.469 6.469 6 C 0.145 3.855 7 H 0.112 0.888 8 C -0.124 4.124 9 C -0.115 4.115 10 C 0.148 3.852 11 H 0.125 0.875 12 C 0.439 3.561 13 O -0.469 6.469 14 O -0.359 6.359 15 C 0.060 3.940 16 C -0.150 4.150 17 N -0.605 5.605 18 C 0.543 3.457 19 O -0.508 6.508 20 C -0.129 4.129 21 C 0.040 3.960 22 C -0.524 4.524 23 H 0.054 0.946 24 C 0.058 3.942 25 N -0.889 5.889 26 Si 0.892 3.108 27 H -0.281 1.281 28 H -0.286 1.286 29 H -0.274 1.274 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.022 0.978 47 H 0.024 0.976 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.495 12.062 21.471 25.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.010 4.010 3 O -0.280 6.280 4 C 0.297 3.703 5 O -0.352 6.352 6 C 0.040 3.960 7 H 0.129 0.871 8 C -0.162 4.162 9 C -0.153 4.153 10 C 0.041 3.959 11 H 0.142 0.858 12 C 0.278 3.722 13 O -0.353 6.353 14 O -0.276 6.276 15 C -0.014 4.014 16 C -0.207 4.207 17 N -0.345 5.345 18 C 0.335 3.665 19 O -0.380 6.380 20 C -0.168 4.168 21 C 0.003 3.997 22 C -0.562 4.562 23 H 0.072 0.928 24 C -0.143 4.143 25 N -0.528 5.528 26 Si 0.720 3.280 27 H -0.207 1.207 28 H -0.212 1.212 29 H -0.199 1.199 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.041 0.959 47 H 0.043 0.957 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.661 10.668 20.900 24.684 hybrid contribution 1.126 -0.397 -0.564 1.320 sum -6.535 10.271 20.336 23.701 Atomic orbital electron populations 1.21786 0.92785 1.02813 1.03268 1.22975 0.94983 0.80311 1.02779 1.86410 1.24473 1.32431 1.84701 1.23290 0.80850 0.92344 0.73789 1.90748 1.60038 1.42282 1.42088 1.21420 0.87936 0.91935 0.94696 0.87079 1.22861 1.00184 0.99570 0.93623 1.22662 0.97265 0.99120 0.96282 1.21138 0.86709 0.91660 0.96367 0.85762 1.24073 0.84794 0.87365 0.75944 1.90814 1.77942 1.16268 1.50260 1.86439 1.28943 1.43866 1.68385 1.23052 0.84156 0.94224 0.99953 1.21793 0.97839 1.00379 1.00707 1.48676 1.11669 1.46780 1.27361 1.21380 0.89896 0.77846 0.77389 1.90688 1.50553 1.32084 1.64642 1.22029 0.91765 1.02790 1.00266 1.18880 0.96940 0.94258 0.89632 1.21178 1.02360 1.22187 1.10465 0.92770 1.25014 0.96860 0.95207 0.97240 1.70009 1.35058 1.24504 1.23240 0.86599 0.84121 0.78419 0.78857 1.20693 1.21190 1.19880 0.91747 0.91422 0.90379 0.90873 0.91615 0.87893 0.89825 0.87964 0.88285 0.91336 0.90714 0.90313 0.91345 0.91683 0.89375 0.90596 0.95926 0.95728 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.29 37.16 0.38 -0.99 16 2 C 0.06 0.84 6.19 37.16 0.23 1.07 16 3 O -0.36 -5.41 10.22 -39.26 -0.40 -5.81 16 4 C 0.46 7.87 5.77 36.00 0.21 8.07 16 5 O -0.47 -10.21 14.68 -26.10 -0.38 -10.59 16 6 C 0.15 1.94 3.68 -67.57 -0.25 1.69 16 7 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 8 C -0.12 -1.09 6.49 -24.58 -0.16 -1.25 16 9 C -0.12 -0.83 6.48 -24.90 -0.16 -0.99 16 10 C 0.15 1.76 3.14 -68.11 -0.21 1.55 16 11 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 12 C 0.44 6.43 6.28 36.01 0.23 6.65 16 13 O -0.47 -9.16 13.43 -18.75 -0.25 -9.41 16 14 O -0.36 -4.33 9.98 -39.27 -0.39 -4.73 16 15 C 0.06 0.66 6.19 37.16 0.23 0.89 16 16 C -0.15 -1.14 10.29 37.16 0.38 -0.76 16 17 N -0.60 -9.90 2.67 -158.20 -0.42 -10.32 16 18 C 0.54 12.01 6.44 -10.99 -0.07 11.94 16 19 O -0.51 -13.28 13.67 -16.53 -0.23 -13.51 16 20 C -0.13 -2.98 4.61 -27.88 -0.13 -3.11 16 21 C 0.04 1.18 4.26 -27.88 -0.12 1.06 16 22 C -0.52 -15.68 9.11 -34.44 -0.31 -16.00 16 23 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 24 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 25 N -0.89 -28.51 13.29 55.43 0.74 -27.77 16 26 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 34 H 0.07 0.82 8.13 -51.92 -0.42 0.40 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.88 8.05 -51.93 -0.42 0.46 16 37 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.10 0.60 7.64 -51.93 -0.40 0.20 16 39 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 40 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 2.05 5.37 -51.93 -0.28 1.77 16 45 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 46 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 47 H 0.02 0.80 8.10 -51.93 -0.42 0.38 16 48 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 398.87 15.07 6.01 6.01 Total: -1.00 -41.63 398.87 -8.02 -49.65 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -7.82 Total: -2.41 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 0.15 Total: 11.50 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.31 Total: -38.09 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -1.65 Total: -44.05 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -41.63 -8.02 -49.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362226383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.484 kcal (2) G-P(sol) polarization free energy of solvation -41.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds