Wall clock time and date at job start Wed Apr 1 2020 01:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45204 * 109.47227 * 2 1 4 4 C 1.34231 * 117.00131 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99607 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00141 * 179.97438 * 4 3 2 7 7 H 1.09007 * 110.41419 * 333.83632 * 6 4 3 8 8 C 1.54913 * 110.36737 * 96.12750 * 6 4 3 9 9 C 1.55157 * 101.57895 * 155.84667 * 8 6 4 10 10 C 1.54308 * 102.86784 * 324.31179 * 9 8 6 11 11 H 1.08996 * 109.77834 * 141.88462 * 10 9 8 12 12 C 1.50702 * 109.98462 * 263.04488 * 10 9 8 13 13 O 1.20831 * 120.00287 * 117.87153 * 12 10 9 14 14 O 1.34233 * 120.00221 * 297.87937 * 12 10 9 15 15 C 1.45197 * 117.00011 * 180.02562 * 14 12 10 16 16 C 1.53001 * 109.47114 * 179.97438 * 15 14 12 17 17 N 1.47021 * 107.27726 * 22.52264 * 10 9 8 18 18 C 1.34772 * 125.64957 * 180.97708 * 17 10 9 19 19 O 1.21285 * 120.00210 * 174.37848 * 18 17 10 20 20 C 1.50701 * 119.99925 * 354.36977 * 18 17 10 21 21 C 1.53005 * 109.47026 * 180.02562 * 20 18 17 22 22 C 1.50701 * 109.47026 * 180.02562 * 21 20 18 23 23 H 1.08007 * 120.00248 * 0.02562 * 22 21 20 24 24 C 1.37875 * 119.99837 * 180.02562 * 22 21 20 25 25 N 1.31516 * 120.00170 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 119.99852 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47038 * 89.99878 * 26 24 22 28 28 H 1.48502 * 109.46888 * 209.99746 * 26 24 22 29 29 H 1.48501 * 109.46975 * 329.99849 * 26 24 22 30 30 H 1.08994 * 109.47221 * 300.00480 * 1 2 3 31 31 H 1.09001 * 109.46451 * 60.00735 * 1 2 3 32 32 H 1.08998 * 109.47048 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47647 * 239.99228 * 2 1 3 34 34 H 1.09010 * 109.46661 * 119.99161 * 2 1 3 35 35 H 1.08991 * 111.00907 * 273.92446 * 8 6 4 36 36 H 1.08999 * 110.99910 * 37.74470 * 8 6 4 37 37 H 1.09006 * 110.71868 * 82.86653 * 9 8 6 38 38 H 1.08995 * 110.72270 * 205.95805 * 9 8 6 39 39 H 1.09001 * 109.47140 * 299.99015 * 15 14 12 40 40 H 1.08991 * 109.47504 * 59.99520 * 15 14 12 41 41 H 1.08995 * 109.47360 * 179.97438 * 16 15 14 42 42 H 1.09006 * 109.46821 * 300.00212 * 16 15 14 43 43 H 1.09001 * 109.47090 * 59.99445 * 16 15 14 44 44 H 1.09002 * 109.46817 * 60.00842 * 20 18 17 45 45 H 1.09001 * 109.47085 * 300.00278 * 20 18 17 46 46 H 1.09002 * 109.46955 * 60.00535 * 21 20 18 47 47 H 1.08998 * 109.47390 * 300.00298 * 21 20 18 48 48 H 0.97002 * 119.99378 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.2190 3.6389 -0.4512 8 6 4.2694 3.3772 1.4439 9 6 5.3606 4.4501 1.1877 10 6 6.1170 3.8862 -0.0334 11 1 6.3950 4.7000 -0.7030 12 6 7.3501 3.1482 0.4204 13 8 7.4643 1.9666 0.1948 14 8 8.3215 3.8033 1.0753 15 6 9.4805 3.0289 1.4818 16 6 10.4729 3.9392 2.2081 17 7 5.2056 2.9610 -0.7224 18 6 5.4984 2.2478 -1.8279 19 8 4.7038 1.4368 -2.2545 20 6 6.8129 2.4583 -2.5342 21 6 6.8928 1.5323 -3.7496 22 6 8.2075 1.7424 -4.4556 23 1 8.9156 2.4638 -4.0752 24 6 8.5066 1.0135 -5.5871 25 7 7.6442 0.1353 -6.0506 26 14 10.1366 1.2734 -6.4618 27 1 11.1533 0.3487 -5.8990 28 1 9.9690 1.0014 -7.9120 29 1 10.5833 2.6765 -6.2696 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8898 34 1 1.8933 -0.5138 0.8902 35 1 3.4021 3.8127 1.9399 36 1 4.6688 2.5430 2.0206 37 1 4.9070 5.4133 0.9538 38 1 6.0252 4.5371 2.0472 39 1 9.1659 2.2275 2.1502 40 1 9.9586 2.6007 0.6009 41 1 11.3428 3.3578 2.5137 42 1 10.7875 4.7405 1.5394 43 1 9.9951 4.3678 3.0891 44 1 7.6322 2.2336 -1.8514 45 1 6.8871 3.4951 -2.8623 46 1 6.0734 1.7574 -4.4324 47 1 6.8183 0.4954 -3.4220 48 1 7.8549 -0.3777 -6.8465 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362226383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:13 Heat of formation + Delta-G solvation = -232.713357 kcal Electronic energy + Delta-G solvation = -31691.464029 eV Core-core repulsion = 27324.858805 eV Total energy + Delta-G solvation = -4366.605224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.54345 -41.45585 -40.43394 -38.71148 -37.74719 -37.45977 -35.66255 -33.53151 -32.99841 -32.70675 -32.37986 -31.18135 -27.96053 -26.55237 -24.61906 -24.46784 -23.52806 -23.09369 -22.45011 -21.77340 -20.16561 -19.36046 -18.96190 -18.59846 -18.05402 -17.85057 -17.63306 -17.38777 -17.03213 -16.58853 -16.43670 -16.16310 -15.41702 -15.17999 -15.06171 -14.60701 -14.50716 -14.39365 -14.33165 -14.12062 -13.74506 -13.63974 -13.59227 -13.33592 -13.13399 -12.97526 -12.85111 -12.77570 -12.60566 -12.56817 -12.50904 -12.46243 -12.28361 -11.94465 -11.75503 -11.66150 -11.59686 -11.47876 -11.39683 -11.36526 -10.90751 -10.63934 -10.07140 -8.24038 -6.39915 0.91536 1.07839 1.25994 1.35960 1.40646 1.51647 1.59866 1.72438 1.92171 2.37816 3.08117 3.13912 3.27258 3.60630 3.65359 3.79663 3.89986 3.95890 3.99281 4.00848 4.04093 4.10934 4.25718 4.28191 4.34126 4.35713 4.41066 4.62143 4.70683 4.78626 4.83479 4.87049 4.89323 4.96641 4.96858 5.02394 5.08518 5.14637 5.19429 5.37274 5.41017 5.44663 5.50622 5.74587 6.05837 6.09652 6.66687 6.71468 6.76742 7.05741 7.30266 8.89276 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007655 B = 0.004413 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3656.776511 B = 6343.609149 C = 9340.541454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.055 3.945 3 O -0.355 6.355 4 C 0.451 3.549 5 O -0.529 6.529 6 C 0.135 3.865 7 H 0.149 0.851 8 C -0.114 4.114 9 C -0.096 4.096 10 C 0.133 3.867 11 H 0.159 0.841 12 C 0.439 3.561 13 O -0.531 6.531 14 O -0.343 6.343 15 C 0.052 3.948 16 C -0.140 4.140 17 N -0.601 5.601 18 C 0.541 3.459 19 O -0.566 6.566 20 C -0.117 4.117 21 C 0.051 3.949 22 C -0.545 4.545 23 H 0.073 0.927 24 C -0.007 4.007 25 N -0.938 5.938 26 Si 0.979 3.021 27 H -0.274 1.274 28 H -0.280 1.280 29 H -0.250 1.250 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.038 0.962 34 H 0.068 0.932 35 H 0.152 0.848 36 H 0.058 0.942 37 H 0.153 0.847 38 H 0.118 0.882 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.109 0.891 46 H -0.012 1.012 47 H -0.033 1.033 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.015 16.462 23.552 29.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.019 4.019 3 O -0.272 6.272 4 C 0.293 3.707 5 O -0.416 6.416 6 C 0.031 3.969 7 H 0.166 0.834 8 C -0.152 4.152 9 C -0.133 4.133 10 C 0.028 3.972 11 H 0.176 0.824 12 C 0.282 3.718 13 O -0.419 6.419 14 O -0.259 6.259 15 C -0.022 4.022 16 C -0.197 4.197 17 N -0.338 5.338 18 C 0.332 3.668 19 O -0.443 6.443 20 C -0.156 4.156 21 C 0.014 3.986 22 C -0.583 4.583 23 H 0.091 0.909 24 C -0.204 4.204 25 N -0.577 5.577 26 Si 0.802 3.198 27 H -0.199 1.199 28 H -0.205 1.205 29 H -0.174 1.174 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.170 0.830 36 H 0.077 0.923 37 H 0.170 0.830 38 H 0.136 0.864 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.111 0.889 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.127 0.873 46 H 0.006 0.994 47 H -0.015 1.015 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.189 15.170 23.062 28.524 hybrid contribution 0.939 -1.810 -1.128 2.330 sum -6.250 13.359 21.933 26.431 Atomic orbital electron populations 1.21789 0.89088 1.04434 1.04170 1.23202 0.97807 0.79594 1.01301 1.86422 1.23535 1.33193 1.84046 1.24283 0.81041 0.93536 0.71858 1.90727 1.61345 1.44527 1.44999 1.22091 0.86901 0.90095 0.97807 0.83389 1.22996 1.02608 0.99490 0.90090 1.22867 0.96187 1.00000 0.94258 1.21862 0.85504 0.90775 0.99017 0.82385 1.24759 0.85622 0.86733 0.74718 1.90817 1.79191 1.19045 1.52865 1.86452 1.28681 1.43213 1.67537 1.23265 0.84353 0.95289 0.99309 1.21793 0.97230 0.99876 1.00810 1.48418 1.13942 1.45678 1.25800 1.20960 0.88828 0.77948 0.79032 1.90660 1.52004 1.34730 1.66952 1.21735 0.93105 1.02852 0.97938 1.18602 0.96055 0.92456 0.91535 1.21610 1.02775 1.22906 1.10986 0.90908 1.26214 1.01691 0.94366 0.98131 1.70202 1.37963 1.25656 1.23924 0.85252 0.77851 0.79563 0.77160 1.19920 1.20509 1.17372 0.89682 0.91532 0.88436 0.94299 0.91359 0.83045 0.92273 0.82950 0.86380 0.91869 0.92914 0.88882 0.90932 0.90078 0.89520 0.87267 0.99407 1.01503 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 10.29 71.98 0.74 -1.69 16 2 C 0.05 1.53 6.19 71.98 0.45 1.98 16 3 O -0.36 -10.79 10.22 -51.43 -0.53 -11.32 16 4 C 0.45 16.03 5.77 71.23 0.41 16.44 16 5 O -0.53 -24.95 14.68 28.98 0.43 -24.52 16 6 C 0.13 3.38 3.68 44.72 0.16 3.54 16 7 H 0.15 2.67 8.14 -2.38 -0.02 2.65 16 8 C -0.11 -1.58 6.49 31.99 0.21 -1.37 16 9 C -0.10 -0.85 6.48 31.78 0.21 -0.65 16 10 C 0.13 2.80 3.14 44.59 0.14 2.94 16 11 H 0.16 2.34 8.14 -2.39 -0.02 2.32 16 12 C 0.44 12.53 6.28 71.24 0.45 12.98 16 13 O -0.53 -21.74 13.43 21.95 0.29 -21.44 16 14 O -0.34 -7.66 9.98 -51.45 -0.51 -8.17 16 15 C 0.05 1.11 6.19 71.98 0.45 1.56 16 16 C -0.14 -1.79 10.29 71.98 0.74 -1.05 16 17 N -0.60 -19.40 2.67 -772.82 -2.06 -21.46 16 18 C 0.54 25.15 6.44 87.66 0.56 25.71 16 19 O -0.57 -32.15 13.67 18.07 0.25 -31.90 16 20 C -0.12 -5.65 4.61 29.85 0.14 -5.51 16 21 C 0.05 3.20 4.26 29.85 0.13 3.33 16 22 C -0.55 -33.73 9.11 25.60 0.23 -33.50 16 23 H 0.07 4.13 7.74 -2.91 -0.02 4.10 16 24 C -0.01 -0.41 5.46 84.65 0.46 0.06 16 25 N -0.94 -62.93 13.29 21.45 0.28 -62.65 16 26 Si 0.98 46.53 29.54 68.60 2.03 48.55 16 27 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 28 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 29 H -0.25 -10.88 7.11 99.48 0.71 -10.17 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.04 1.33 8.13 -2.39 -0.02 1.31 16 34 H 0.07 1.83 8.13 -2.38 -0.02 1.81 16 35 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 1.15 8.05 -2.39 -0.02 1.13 16 37 H 0.15 0.01 8.14 -2.38 -0.02 -0.01 16 38 H 0.12 0.74 7.64 -2.39 -0.02 0.72 16 39 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 40 H 0.05 1.36 8.13 -2.39 -0.02 1.34 16 41 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.09 4.23 5.37 -2.39 -0.01 4.22 16 45 H 0.11 4.42 8.14 -2.39 -0.02 4.40 16 46 H -0.01 -0.85 8.10 -2.39 -0.02 -0.87 16 47 H -0.03 -2.44 8.10 -2.39 -0.02 -2.46 16 48 H 0.26 16.46 8.31 -92.71 -0.77 15.69 16 Total: -1.00 -104.36 398.87 6.60 -97.77 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 0.95 Total: 10.39 kcal Atomic # 6 Polarization: 19.28 SS G_CDS: 5.47 Total: 24.76 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -1.78 Total: -84.11 kcal Atomic # 8 Polarization: -97.28 SS G_CDS: -0.07 Total: -97.36 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -104.36 6.60 -97.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362226383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.948 kcal (2) G-P(sol) polarization free energy of solvation -104.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds