Wall clock time and date at job start Wed Apr 1 2020 01:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45199 * 109.47278 * 2 1 4 4 C 1.34226 * 116.99979 * 179.97438 * 3 2 1 5 5 O 1.20831 * 120.00462 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00116 * 180.02562 * 4 3 2 7 7 H 1.09011 * 109.86869 * 301.02065 * 6 4 3 8 8 C 1.54321 * 109.88088 * 62.19205 * 6 4 3 9 9 C 1.55155 * 102.94323 * 141.61461 * 8 6 4 10 10 C 1.54910 * 101.57745 * 324.50078 * 9 8 6 11 11 H 1.09009 * 110.45746 * 278.11945 * 10 9 8 12 12 C 1.50708 * 110.36673 * 155.85015 * 10 9 8 13 13 O 1.20815 * 119.99682 * 275.57968 * 12 10 9 14 14 O 1.34227 * 120.00012 * 95.58357 * 12 10 9 15 15 C 1.45197 * 117.00007 * 179.97438 * 14 12 10 16 16 C 1.53003 * 109.47172 * 179.97438 * 15 14 12 17 17 N 1.47019 * 109.88397 * 180.02562 * 6 4 3 18 18 C 1.34772 * 125.65189 * 61.60194 * 17 6 4 19 19 O 1.21280 * 120.00160 * 176.27322 * 18 17 6 20 20 C 1.50702 * 119.99902 * 356.27856 * 18 17 6 21 21 C 1.53000 * 109.46917 * 173.46391 * 20 18 17 22 22 C 1.50702 * 109.46917 * 179.97438 * 21 20 18 23 23 H 1.07995 * 120.00281 * 0.02562 * 22 21 20 24 24 C 1.37880 * 119.99892 * 180.02562 * 22 21 20 25 25 N 1.31512 * 119.99928 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00009 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47751 * 89.99203 * 26 24 22 28 28 H 1.48497 * 109.46944 * 209.99832 * 26 24 22 29 29 H 1.48504 * 109.46845 * 329.98873 * 26 24 22 30 30 H 1.08997 * 109.47084 * 59.99696 * 1 2 3 31 31 H 1.09002 * 109.47570 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47087 * 299.99799 * 1 2 3 33 33 H 1.09007 * 109.47317 * 239.99807 * 2 1 3 34 34 H 1.09005 * 109.46994 * 119.99976 * 2 1 3 35 35 H 1.08999 * 110.71740 * 259.97243 * 8 6 4 36 36 H 1.08994 * 110.72287 * 23.24672 * 8 6 4 37 37 H 1.08990 * 111.00816 * 206.42267 * 9 8 6 38 38 H 1.09003 * 111.03770 * 82.57907 * 9 8 6 39 39 H 1.08996 * 109.47172 * 300.00078 * 15 14 12 40 40 H 1.08996 * 109.47074 * 59.99860 * 15 14 12 41 41 H 1.08999 * 109.46635 * 180.02562 * 16 15 14 42 42 H 1.09002 * 109.46891 * 299.99865 * 16 15 14 43 43 H 1.08996 * 109.47159 * 60.00005 * 16 15 14 44 44 H 1.08995 * 109.46755 * 293.46538 * 20 18 17 45 45 H 1.09001 * 109.46891 * 53.46699 * 20 18 17 46 46 H 1.09004 * 109.47640 * 299.99879 * 21 20 18 47 47 H 1.09002 * 109.47350 * 59.99948 * 21 20 18 48 48 H 0.97003 * 119.99823 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.5745 3.4819 -0.8774 8 6 3.4953 3.6807 1.2849 9 6 4.7668 4.4887 1.6561 10 6 5.8912 3.5118 1.2307 11 1 6.0604 2.7647 2.0062 12 6 7.1633 4.2682 0.9461 13 8 7.3408 4.7640 -0.1412 14 8 8.0990 4.3910 1.9007 15 6 9.2989 5.1322 1.5560 16 6 10.2413 5.1660 2.7609 17 7 5.3895 2.8709 0.0010 18 6 6.1506 2.3156 -0.9626 19 8 7.3597 2.3772 -0.8912 20 6 5.4992 1.6181 -2.1289 21 6 6.5687 1.2246 -3.1498 22 6 5.9175 0.5265 -4.3159 23 1 4.8477 0.3788 -4.3278 24 6 6.6873 0.0765 -5.3674 25 7 7.9900 0.2569 -5.3531 26 14 5.8800 -0.7880 -6.8131 27 1 5.5035 0.2143 -7.8421 28 1 6.8316 -1.7658 -7.3993 29 1 4.6630 -1.5002 -6.3471 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.6585 4.3495 1.0838 36 1 3.2437 2.9732 2.0748 37 1 4.8053 4.6862 2.7273 38 1 4.8202 5.4172 1.0876 39 1 9.7979 4.6463 0.7176 40 1 9.0293 6.1509 1.2774 41 1 11.1419 5.7228 2.5022 42 1 9.7421 5.6522 3.5991 43 1 10.5110 4.1474 3.0399 44 1 4.9863 0.7232 -1.7767 45 1 4.7792 2.2890 -2.5974 46 1 7.0817 2.1195 -3.5021 47 1 7.2889 0.5537 -2.6813 48 1 8.5315 -0.0594 -6.0931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362226384.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:16 Heat of formation + Delta-G solvation = -204.470508 kcal Electronic energy + Delta-G solvation = -31485.304030 eV Core-core repulsion = 27119.923508 eV Total energy + Delta-G solvation = -4365.380522 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.32778 -40.30353 -39.07455 -37.35570 -36.63311 -36.21563 -33.40356 -32.13150 -32.01559 -31.67763 -30.78244 -30.14247 -26.11489 -25.29394 -23.56125 -23.17919 -22.28457 -22.02722 -21.13350 -20.46036 -18.78238 -18.33213 -17.55573 -17.23179 -16.72308 -16.49015 -16.35987 -15.99895 -15.56223 -15.23489 -14.66059 -14.40709 -14.30204 -14.14969 -14.01294 -13.55759 -13.35237 -13.19710 -12.94102 -12.93341 -12.57953 -12.44590 -12.28416 -12.09992 -12.05038 -11.93559 -11.72282 -11.69208 -11.60214 -11.36013 -11.07464 -10.89496 -10.63824 -10.54973 -10.48392 -10.45317 -10.24782 -9.78629 -9.57083 -9.16717 -8.99056 -8.74510 -8.25823 -5.90044 -3.93993 2.07921 2.13331 2.44297 2.62331 3.17570 3.33590 3.36647 3.42077 3.45274 4.00627 4.08179 4.44608 4.51762 4.60965 4.73343 4.79397 4.84236 4.87675 4.90705 4.96157 5.00583 5.14720 5.23328 5.25920 5.34855 5.43558 5.44239 5.44803 5.55126 5.61832 5.62249 5.69540 5.72784 5.77956 5.86206 6.13199 6.25020 6.28978 6.51160 6.55603 6.95531 7.52189 7.76692 7.80229 7.94344 7.95063 8.13892 8.44167 8.69217 9.13500 9.68577 11.21114 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007232 B = 0.004474 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3870.600804 B = 6256.789815 C = 9690.618690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.356 6.356 4 C 0.445 3.555 5 O -0.478 6.478 6 C 0.148 3.852 7 H 0.122 0.878 8 C -0.112 4.112 9 C -0.119 4.119 10 C 0.143 3.857 11 H 0.106 0.894 12 C 0.465 3.535 13 O -0.475 6.475 14 O -0.361 6.361 15 C 0.063 3.937 16 C -0.150 4.150 17 N -0.604 5.604 18 C 0.543 3.457 19 O -0.510 6.510 20 C -0.131 4.131 21 C 0.040 3.960 22 C -0.523 4.523 23 H 0.054 0.946 24 C 0.058 3.942 25 N -0.890 5.890 26 Si 0.893 3.107 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.274 1.274 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.098 0.902 45 H 0.071 0.929 46 H 0.022 0.978 47 H 0.025 0.975 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.527 9.459 20.585 25.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.273 6.273 4 C 0.285 3.715 5 O -0.363 6.363 6 C 0.041 3.959 7 H 0.140 0.860 8 C -0.150 4.150 9 C -0.157 4.157 10 C 0.038 3.962 11 H 0.124 0.876 12 C 0.304 3.696 13 O -0.359 6.359 14 O -0.278 6.278 15 C -0.011 4.011 16 C -0.207 4.207 17 N -0.344 5.344 18 C 0.335 3.665 19 O -0.382 6.382 20 C -0.170 4.170 21 C 0.002 3.998 22 C -0.562 4.562 23 H 0.072 0.928 24 C -0.143 4.143 25 N -0.528 5.528 26 Si 0.720 3.280 27 H -0.207 1.207 28 H -0.212 1.212 29 H -0.199 1.199 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.124 0.876 36 H 0.106 0.894 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.116 0.884 45 H 0.089 0.911 46 H 0.040 0.960 47 H 0.043 0.957 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.293 9.237 20.074 24.816 hybrid contribution -0.217 -0.725 -1.040 1.286 sum -11.510 8.512 19.035 23.817 Atomic orbital electron populations 1.21795 0.92617 1.02966 1.03409 1.23071 0.95239 0.80042 1.03042 1.86456 1.24004 1.32660 1.84198 1.24031 0.80993 0.92915 0.73564 1.90732 1.60140 1.42576 1.42881 1.21102 0.81734 0.90237 1.02826 0.86015 1.22598 0.98494 0.99091 0.94839 1.22827 0.91720 0.97889 1.03300 1.21373 0.90064 0.95298 0.89433 0.87643 1.23187 0.84854 0.78820 0.82719 1.90708 1.77760 1.43971 1.23463 1.86413 1.28526 1.69578 1.43318 1.22994 0.83284 0.95712 0.99062 1.21792 0.98238 1.03337 0.97346 1.48585 1.04398 1.60084 1.21355 1.21397 0.87065 0.75927 0.82114 1.90686 1.14102 1.57071 1.76343 1.22098 1.01908 0.99779 0.93238 1.18894 0.92411 0.97188 0.91288 1.21177 0.93585 1.37654 1.03741 0.92777 1.25013 0.94792 0.96171 0.98352 1.70006 1.04427 1.46591 1.31802 0.86594 0.79151 0.79470 0.82760 1.20663 1.21198 1.19920 0.91337 0.90286 0.91641 0.90681 0.91259 0.87629 0.89374 0.88030 0.89127 0.90819 0.91483 0.90326 0.91720 0.91433 0.88389 0.91111 0.96007 0.95675 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 37.15 0.38 -0.69 16 2 C 0.06 0.61 6.19 37.15 0.23 0.84 16 3 O -0.36 -4.08 10.19 -39.25 -0.40 -4.48 16 4 C 0.45 6.11 6.38 36.01 0.23 6.34 16 5 O -0.48 -8.46 13.05 -18.75 -0.24 -8.71 16 6 C 0.15 1.78 3.15 -68.11 -0.21 1.56 16 7 H 0.12 1.32 8.14 -51.92 -0.42 0.89 16 8 C -0.11 -0.81 6.45 -24.90 -0.16 -0.97 16 9 C -0.12 -0.97 6.49 -24.58 -0.16 -1.12 16 10 C 0.14 1.94 3.67 -67.54 -0.25 1.69 16 11 H 0.11 1.31 8.14 -51.92 -0.42 0.89 16 12 C 0.46 7.71 5.79 36.01 0.21 7.92 16 13 O -0.48 -9.71 14.69 -26.03 -0.38 -10.09 16 14 O -0.36 -5.29 10.22 -39.25 -0.40 -5.70 16 15 C 0.06 0.81 6.19 37.16 0.23 1.04 16 16 C -0.15 -1.35 10.29 37.16 0.38 -0.97 16 17 N -0.60 -9.99 2.63 -158.15 -0.42 -10.41 16 18 C 0.54 12.09 6.63 -10.99 -0.07 12.01 16 19 O -0.51 -13.34 13.74 -16.35 -0.22 -13.57 16 20 C -0.13 -3.06 4.22 -27.88 -0.12 -3.18 16 21 C 0.04 1.16 4.29 -27.88 -0.12 1.04 16 22 C -0.52 -15.72 9.11 -34.44 -0.31 -16.04 16 23 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 24 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 25 N -0.89 -28.53 13.29 55.43 0.74 -27.80 16 26 Si 0.89 22.47 29.54 -169.99 -5.02 17.45 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 34 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 35 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.55 7.84 -51.93 -0.41 0.15 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 39 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 40 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.10 2.28 5.50 -51.93 -0.29 1.99 16 45 H 0.07 1.50 8.07 -51.93 -0.42 1.09 16 46 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.02 0.80 8.03 -51.93 -0.42 0.38 16 48 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 398.90 15.07 6.01 6.01 Total: -1.00 -40.63 398.90 -8.01 -48.64 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -7.83 Total: -2.51 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 0.16 Total: 11.15 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.32 Total: -38.20 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -1.65 Total: -42.53 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -40.63 -8.01 -48.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362226384.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.832 kcal (2) G-P(sol) polarization free energy of solvation -40.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds