Wall clock time and date at job start Wed Apr 1 2020 01:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45199 * 109.47278 * 2 1 4 4 C 1.34226 * 116.99979 * 179.97438 * 3 2 1 5 5 O 1.20831 * 120.00462 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00116 * 180.02562 * 4 3 2 7 7 H 1.09011 * 109.86869 * 301.02065 * 6 4 3 8 8 C 1.54321 * 109.88088 * 62.19205 * 6 4 3 9 9 C 1.55155 * 102.94323 * 141.61461 * 8 6 4 10 10 C 1.54910 * 101.57745 * 324.50078 * 9 8 6 11 11 H 1.09009 * 110.45746 * 278.11945 * 10 9 8 12 12 C 1.50708 * 110.36673 * 155.85015 * 10 9 8 13 13 O 1.20815 * 119.99682 * 275.57968 * 12 10 9 14 14 O 1.34227 * 120.00012 * 95.58357 * 12 10 9 15 15 C 1.45197 * 117.00007 * 179.97438 * 14 12 10 16 16 C 1.53003 * 109.47172 * 179.97438 * 15 14 12 17 17 N 1.47019 * 109.88397 * 180.02562 * 6 4 3 18 18 C 1.34772 * 125.65189 * 61.60194 * 17 6 4 19 19 O 1.21280 * 120.00160 * 176.27322 * 18 17 6 20 20 C 1.50702 * 119.99902 * 356.27856 * 18 17 6 21 21 C 1.53000 * 109.46917 * 173.46391 * 20 18 17 22 22 C 1.50702 * 109.46917 * 179.97438 * 21 20 18 23 23 H 1.07995 * 120.00281 * 0.02562 * 22 21 20 24 24 C 1.37880 * 119.99892 * 180.02562 * 22 21 20 25 25 N 1.31512 * 119.99928 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00009 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47751 * 89.99203 * 26 24 22 28 28 H 1.48497 * 109.46944 * 209.99832 * 26 24 22 29 29 H 1.48504 * 109.46845 * 329.98873 * 26 24 22 30 30 H 1.08997 * 109.47084 * 59.99696 * 1 2 3 31 31 H 1.09002 * 109.47570 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47087 * 299.99799 * 1 2 3 33 33 H 1.09007 * 109.47317 * 239.99807 * 2 1 3 34 34 H 1.09005 * 109.46994 * 119.99976 * 2 1 3 35 35 H 1.08999 * 110.71740 * 259.97243 * 8 6 4 36 36 H 1.08994 * 110.72287 * 23.24672 * 8 6 4 37 37 H 1.08990 * 111.00816 * 206.42267 * 9 8 6 38 38 H 1.09003 * 111.03770 * 82.57907 * 9 8 6 39 39 H 1.08996 * 109.47172 * 300.00078 * 15 14 12 40 40 H 1.08996 * 109.47074 * 59.99860 * 15 14 12 41 41 H 1.08999 * 109.46635 * 180.02562 * 16 15 14 42 42 H 1.09002 * 109.46891 * 299.99865 * 16 15 14 43 43 H 1.08996 * 109.47159 * 60.00005 * 16 15 14 44 44 H 1.08995 * 109.46755 * 293.46538 * 20 18 17 45 45 H 1.09001 * 109.46891 * 53.46699 * 20 18 17 46 46 H 1.09004 * 109.47640 * 299.99879 * 21 20 18 47 47 H 1.09002 * 109.47350 * 59.99948 * 21 20 18 48 48 H 0.97003 * 119.99823 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.5745 3.4819 -0.8774 8 6 3.4953 3.6807 1.2849 9 6 4.7668 4.4887 1.6561 10 6 5.8912 3.5118 1.2307 11 1 6.0604 2.7647 2.0062 12 6 7.1633 4.2682 0.9461 13 8 7.3408 4.7640 -0.1412 14 8 8.0990 4.3910 1.9007 15 6 9.2989 5.1322 1.5560 16 6 10.2413 5.1660 2.7609 17 7 5.3895 2.8709 0.0010 18 6 6.1506 2.3156 -0.9626 19 8 7.3597 2.3772 -0.8912 20 6 5.4992 1.6181 -2.1289 21 6 6.5687 1.2246 -3.1498 22 6 5.9175 0.5265 -4.3159 23 1 4.8477 0.3788 -4.3278 24 6 6.6873 0.0765 -5.3674 25 7 7.9900 0.2569 -5.3531 26 14 5.8800 -0.7880 -6.8131 27 1 5.5035 0.2143 -7.8421 28 1 6.8316 -1.7658 -7.3993 29 1 4.6630 -1.5002 -6.3471 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.6585 4.3495 1.0838 36 1 3.2437 2.9732 2.0748 37 1 4.8053 4.6862 2.7273 38 1 4.8202 5.4172 1.0876 39 1 9.7979 4.6463 0.7176 40 1 9.0293 6.1509 1.2774 41 1 11.1419 5.7228 2.5022 42 1 9.7421 5.6522 3.5991 43 1 10.5110 4.1474 3.0399 44 1 4.9863 0.7232 -1.7767 45 1 4.7792 2.2890 -2.5974 46 1 7.0817 2.1195 -3.5021 47 1 7.2889 0.5537 -2.6813 48 1 8.5315 -0.0594 -6.0931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362226384.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:15 Heat of formation + Delta-G solvation = -231.474224 kcal Electronic energy + Delta-G solvation = -31486.474999 eV Core-core repulsion = 27119.923508 eV Total energy + Delta-G solvation = -4366.551491 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.53063 -41.47580 -40.44829 -38.72906 -37.76392 -37.44356 -35.66991 -33.53414 -32.97977 -32.69009 -32.39450 -31.20675 -27.98637 -26.60907 -24.60186 -24.38171 -23.50252 -23.03717 -22.39785 -21.86320 -20.15670 -19.45939 -19.09762 -18.61969 -18.03501 -17.78350 -17.63353 -17.49195 -16.81146 -16.53105 -16.46156 -16.23842 -15.33354 -15.25697 -15.09723 -14.62414 -14.52976 -14.46941 -14.29586 -14.08832 -13.69967 -13.62951 -13.46032 -13.30756 -13.17242 -13.02936 -12.93122 -12.80175 -12.77756 -12.55795 -12.51668 -12.44057 -12.14563 -11.88391 -11.76399 -11.61932 -11.58607 -11.45315 -11.43320 -11.37242 -10.92575 -10.63677 -10.09372 -8.24402 -6.40317 0.90559 1.05708 1.27561 1.35730 1.39095 1.40555 1.51447 1.83974 1.91203 2.37608 3.07625 3.10798 3.24420 3.61091 3.64027 3.79601 3.92175 3.93311 4.00255 4.04623 4.06550 4.13901 4.23858 4.25848 4.28990 4.39830 4.42927 4.60038 4.71601 4.78608 4.83731 4.88077 4.90397 4.97768 5.00223 5.03882 5.09036 5.13828 5.19571 5.36720 5.40537 5.45374 5.50484 5.74000 6.03339 6.08740 6.64362 6.69953 6.75768 7.02577 7.29783 8.88869 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007232 B = 0.004474 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3870.600804 B = 6256.789815 C = 9690.618690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 O -0.343 6.343 4 C 0.450 3.550 5 O -0.527 6.527 6 C 0.133 3.867 7 H 0.139 0.861 8 C -0.095 4.095 9 C -0.103 4.103 10 C 0.132 3.868 11 H 0.119 0.881 12 C 0.459 3.541 13 O -0.524 6.524 14 O -0.358 6.358 15 C 0.055 3.945 16 C -0.140 4.140 17 N -0.601 5.601 18 C 0.540 3.460 19 O -0.566 6.566 20 C -0.117 4.117 21 C 0.050 3.950 22 C -0.546 4.546 23 H 0.071 0.929 24 C -0.006 4.006 25 N -0.937 5.937 26 Si 0.980 3.020 27 H -0.266 1.266 28 H -0.281 1.281 29 H -0.256 1.256 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.147 0.853 36 H 0.105 0.895 37 H 0.143 0.857 38 H 0.091 0.909 39 H 0.040 0.960 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.102 0.898 45 H 0.093 0.907 46 H -0.021 1.021 47 H -0.022 1.022 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.412 10.324 22.213 29.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.258 6.258 4 C 0.292 3.708 5 O -0.416 6.416 6 C 0.028 3.972 7 H 0.156 0.844 8 C -0.132 4.132 9 C -0.141 4.141 10 C 0.028 3.972 11 H 0.137 0.863 12 C 0.302 3.698 13 O -0.411 6.411 14 O -0.275 6.275 15 C -0.019 4.019 16 C -0.197 4.197 17 N -0.339 5.339 18 C 0.331 3.669 19 O -0.444 6.444 20 C -0.157 4.157 21 C 0.013 3.987 22 C -0.584 4.584 23 H 0.089 0.911 24 C -0.203 4.203 25 N -0.577 5.577 26 Si 0.802 3.198 27 H -0.191 1.191 28 H -0.207 1.207 29 H -0.180 1.180 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.165 0.835 36 H 0.124 0.876 37 H 0.161 0.839 38 H 0.110 0.890 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.117 0.883 42 H 0.103 0.897 43 H 0.081 0.919 44 H 0.120 0.880 45 H 0.111 0.889 46 H -0.003 1.003 47 H -0.004 1.004 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.269 10.135 21.773 28.459 hybrid contribution 1.004 -0.982 -1.473 2.036 sum -14.265 9.152 20.300 26.445 Atomic orbital electron populations 1.21801 0.89770 1.04241 1.04134 1.23308 0.97390 0.79255 1.02254 1.86466 1.22498 1.33446 1.83433 1.24340 0.81411 0.92936 0.72072 1.90728 1.61298 1.44149 1.45394 1.21691 0.78729 0.90102 1.06675 0.84379 1.22766 0.98973 0.99233 0.92259 1.22963 0.89104 0.96285 1.05742 1.21932 0.90634 0.96669 0.87983 0.86344 1.23930 0.85768 0.77976 0.82168 1.90683 1.78896 1.46206 1.25314 1.86425 1.28732 1.69581 1.42725 1.23237 0.83164 0.95435 1.00051 1.21802 0.98109 1.03678 0.96092 1.48318 1.06493 1.58191 1.20848 1.20963 0.86525 0.76237 0.83139 1.90655 1.16352 1.59482 1.77903 1.21784 1.00159 1.00766 0.92947 1.18619 0.92956 0.94304 0.92832 1.21590 0.94501 1.38063 1.04199 0.91087 1.26203 0.95305 0.96711 1.02095 1.70196 1.06614 1.47654 1.33189 0.85244 0.78391 0.78214 0.77935 1.19145 1.20693 1.17976 0.91330 0.88770 0.90120 0.92699 0.91030 0.83453 0.87623 0.83851 0.88990 0.94145 0.90602 0.88265 0.89706 0.91927 0.88037 0.88923 1.00254 1.00373 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 10.29 71.98 0.74 -0.88 16 2 C 0.05 0.97 6.19 71.98 0.45 1.42 16 3 O -0.34 -7.03 10.19 -51.38 -0.52 -7.55 16 4 C 0.45 11.73 6.38 71.24 0.45 12.18 16 5 O -0.53 -18.83 13.05 21.95 0.29 -18.54 16 6 C 0.13 2.91 3.15 44.60 0.14 3.05 16 7 H 0.14 2.62 8.14 -2.38 -0.02 2.60 16 8 C -0.10 -0.91 6.45 31.78 0.20 -0.71 16 9 C -0.10 -1.26 6.49 31.99 0.21 -1.05 16 10 C 0.13 3.43 3.67 44.72 0.16 3.60 16 11 H 0.12 2.79 8.14 -2.38 -0.02 2.77 16 12 C 0.46 15.66 5.79 71.24 0.41 16.07 16 13 O -0.52 -22.62 14.69 28.97 0.43 -22.20 16 14 O -0.36 -10.69 10.22 -51.38 -0.53 -11.21 16 15 C 0.05 1.46 6.19 71.98 0.45 1.90 16 16 C -0.14 -2.40 10.29 71.98 0.74 -1.66 16 17 N -0.60 -19.92 2.63 -772.66 -2.03 -21.95 16 18 C 0.54 25.41 6.63 87.66 0.58 25.99 16 19 O -0.57 -32.19 13.74 17.91 0.25 -31.95 16 20 C -0.12 -5.76 4.22 29.85 0.13 -5.64 16 21 C 0.05 3.18 4.29 29.85 0.13 3.30 16 22 C -0.55 -33.94 9.11 25.60 0.23 -33.70 16 23 H 0.07 4.07 7.74 -2.91 -0.02 4.05 16 24 C -0.01 -0.35 5.46 84.66 0.46 0.12 16 25 N -0.94 -62.77 13.29 21.45 0.28 -62.49 16 26 Si 0.98 46.61 29.54 68.60 2.03 48.64 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 28 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 29 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.07 1.32 8.13 -2.38 -0.02 1.30 16 35 H 0.15 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.11 0.75 7.84 -2.39 -0.02 0.73 16 37 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.09 1.18 8.05 -2.39 -0.02 1.16 16 39 H 0.04 1.32 8.13 -2.39 -0.02 1.30 16 40 H 0.08 1.85 8.13 -2.39 -0.02 1.83 16 41 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.10 4.93 5.50 -2.39 -0.01 4.92 16 45 H 0.09 4.04 8.07 -2.39 -0.02 4.02 16 46 H -0.02 -1.47 8.14 -2.38 -0.02 -1.49 16 47 H -0.02 -1.57 8.03 -2.39 -0.02 -1.59 16 48 H 0.26 16.45 8.31 -92.71 -0.77 15.68 16 Total: -1.00 -98.97 398.90 6.62 -92.34 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.95 Total: 10.92 kcal Atomic # 6 Polarization: 18.50 SS G_CDS: 5.49 Total: 23.99 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -1.75 Total: -84.44 kcal Atomic # 8 Polarization: -91.36 SS G_CDS: -0.09 Total: -91.45 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -98.97 6.62 -92.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362226384.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.130 kcal (2) G-P(sol) polarization free energy of solvation -98.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds