Wall clock time and date at job start Wed Apr 1 2020 00:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.36879 * 126.40033 * 265.02702 * 3 2 1 5 5 C 1.34675 * 106.81988 * 180.02562 * 4 3 2 6 6 S 1.76199 * 125.98989 * 180.02562 * 5 4 3 7 7 O 1.42105 * 106.39915 * 203.53932 * 6 5 4 8 8 O 1.42100 * 106.40012 * 336.45573 * 6 5 4 9 9 N 1.65598 * 107.21976 * 89.99605 * 6 5 4 10 10 C 1.46920 * 120.62752 * 269.71771 * 9 6 5 11 11 C 1.53632 * 108.54301 * 126.37288 * 10 9 6 12 12 C 1.53036 * 109.24240 * 54.84965 * 11 10 9 13 13 C 1.53001 * 109.46155 * 178.49130 * 12 11 10 14 14 C 1.50696 * 109.47279 * 295.07370 * 13 12 11 15 15 H 1.08000 * 119.99946 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00092 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99830 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99899 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47143 * 60.00280 * 18 16 14 20 20 H 1.48502 * 109.46904 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47310 * 300.00075 * 18 16 14 22 22 C 1.53039 * 109.53966 * 298.51754 * 12 11 10 23 23 C 1.46923 * 120.63008 * 89.99940 * 9 6 5 24 24 N 1.34132 * 108.01601 * 359.97438 * 5 4 3 25 25 C 1.30493 * 109.26007 * 359.73026 * 24 5 4 26 26 C 1.50696 * 125.65484 * 180.29184 * 25 24 5 27 27 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 32 32 H 1.08004 * 126.59316 * 0.03364 * 4 3 2 33 33 H 1.09005 * 109.59152 * 246.20264 * 10 9 6 34 34 H 1.08997 * 109.59171 * 6.62891 * 10 9 6 35 35 H 1.09002 * 109.62880 * 294.86386 * 11 10 9 36 36 H 1.09001 * 109.43431 * 174.72356 * 11 10 9 37 37 H 1.09003 * 109.44648 * 58.53073 * 12 11 10 38 38 H 1.09004 * 109.46448 * 55.07202 * 13 12 11 39 39 H 1.09001 * 109.47142 * 175.07167 * 13 12 11 40 40 H 0.96995 * 119.99949 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.49881 * 301.41157 * 22 12 11 42 42 H 1.09000 * 109.52305 * 181.32885 * 22 12 11 43 43 H 1.08998 * 109.58884 * 353.37220 * 23 9 6 44 44 H 1.08999 * 109.58685 * 113.65332 * 23 9 6 45 45 H 1.09000 * 109.47221 * 270.17745 * 26 25 24 46 46 H 1.09007 * 109.46854 * 30.17396 * 26 25 24 47 47 H 1.09001 * 109.47535 * 150.17412 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3790 2.1152 -1.0976 5 6 2.7656 3.3244 -0.6479 6 16 3.3310 4.6660 -1.6404 7 8 4.1232 5.4863 -0.7925 8 8 3.8192 4.0949 -2.8465 9 7 2.0026 5.5647 -2.0527 10 6 1.2521 5.2711 -3.2811 11 6 -0.2277 5.0796 -2.9155 12 6 -0.7232 6.3124 -2.1561 13 6 -2.2068 6.1434 -1.8224 14 6 -3.0081 6.1103 -3.0982 15 1 -2.5092 6.2012 -4.0517 16 6 -4.3782 5.9639 -3.0482 17 7 -4.9858 5.8537 -1.8870 18 14 -5.3715 5.9236 -4.6296 19 1 -4.9196 4.7852 -5.4691 20 1 -6.8113 5.7582 -4.3057 21 1 -5.1734 7.1949 -5.3712 22 6 0.0760 6.4711 -0.8607 23 6 1.5559 6.6748 -1.2001 24 7 2.6436 3.3287 0.6879 25 6 2.1907 2.1702 1.0825 26 6 1.9105 1.7765 2.5098 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.3577 1.7877 -2.1266 33 1 1.3543 6.1019 -3.9793 34 1 1.6384 4.3591 -3.7362 35 1 -0.3382 4.1962 -2.2866 36 1 -0.8130 4.9539 -3.8265 37 1 -0.5893 7.1988 -2.7763 38 1 -2.3525 5.2106 -1.2774 39 1 -2.5383 6.9795 -1.2067 40 1 -5.9495 5.7504 -1.8518 41 1 -0.0373 5.5746 -0.2511 42 1 -0.2929 7.3355 -0.3086 43 1 2.1428 6.6893 -0.2817 44 1 1.6848 7.6180 -1.7310 45 1 2.8075 1.3398 2.9490 46 1 1.6196 2.6590 3.0797 47 1 1.1019 1.0460 2.5332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399370208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:46 Heat of formation + Delta-G solvation = -34.265167 kcal Electronic energy + Delta-G solvation = -29004.094783 eV Core-core repulsion = 25121.140540 eV Total energy + Delta-G solvation = -3882.954242 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.41941 -38.22082 -37.07994 -35.67136 -35.38658 -33.89740 -32.13092 -31.91703 -30.63308 -30.47824 -27.61999 -27.44774 -24.30793 -24.15608 -22.82984 -22.34362 -21.27959 -20.20615 -19.52653 -18.56081 -17.93223 -17.24005 -16.27240 -16.19871 -15.87230 -15.65551 -14.85994 -14.55633 -14.52398 -14.15137 -13.84091 -13.67864 -13.55727 -13.43563 -13.22546 -13.20782 -12.98803 -12.71010 -12.38622 -12.33252 -12.00996 -11.90818 -11.80403 -11.68951 -11.59865 -11.46177 -11.14215 -10.88482 -10.72054 -10.66419 -10.40201 -10.21762 -10.08872 -10.06580 -9.60539 -9.33675 -8.98245 -8.86938 -8.56344 -8.35197 -6.00346 -4.01967 0.56389 1.50050 2.35360 2.47770 3.24167 3.30966 3.36026 3.38143 3.92172 4.05411 4.21691 4.33098 4.44529 4.49559 4.66036 4.70903 4.92468 4.96373 5.16521 5.20925 5.22789 5.28160 5.34642 5.43368 5.54181 5.55030 5.63248 5.72275 5.80896 5.84266 5.86227 5.94378 6.11420 6.13232 6.24709 6.47308 6.50964 6.73342 6.76333 6.83575 7.04577 7.07167 7.16131 7.65502 7.68025 7.83505 8.00240 8.43231 9.04706 9.61635 11.10891 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010688 B = 0.003855 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.252944 B = 7261.118234 C = 8628.370380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.094 3.906 3 N -0.449 5.449 4 C 0.067 3.933 5 C -0.555 4.555 6 S 2.724 3.276 7 O -0.949 6.949 8 O -0.963 6.963 9 N -0.989 5.989 10 C 0.117 3.883 11 C -0.117 4.117 12 C -0.079 4.079 13 C 0.029 3.971 14 C -0.515 4.515 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.277 1.277 22 C -0.128 4.128 23 C 0.124 3.876 24 N -0.410 5.410 25 C 0.207 3.793 26 C -0.069 4.069 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.191 0.809 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.013 0.987 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.116 -12.221 5.108 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.028 4.028 3 N -0.130 5.130 4 C -0.074 4.074 5 C -0.766 4.766 6 S 2.811 3.189 7 O -0.939 6.939 8 O -0.952 6.952 9 N -0.828 5.828 10 C -0.008 4.008 11 C -0.156 4.156 12 C -0.097 4.097 13 C -0.008 4.008 14 C -0.553 4.553 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.167 4.167 23 C -0.001 4.001 24 N -0.128 5.128 25 C -0.059 4.059 26 C -0.128 4.128 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.208 0.792 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.031 0.969 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.114 0.886 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.939 -11.581 5.504 19.687 hybrid contribution -1.593 -1.339 -1.049 2.331 sum 13.346 -12.920 4.454 19.102 Atomic orbital electron populations 1.22202 0.93133 1.03637 1.04166 1.22030 0.96418 0.79278 1.05037 1.45796 1.47289 1.12970 1.06950 1.22633 0.99765 0.91577 0.93427 1.33553 1.23580 1.16115 1.03307 1.01148 0.72743 0.72435 0.72607 1.93545 1.65641 1.66269 1.68484 1.93563 1.77731 1.79643 1.44310 1.57619 1.48718 1.43999 1.32493 1.21722 0.93140 1.01291 0.84608 1.21959 0.92859 0.99024 1.01733 1.21143 0.97734 0.96741 0.94115 1.19112 0.88171 0.96912 0.96640 1.21227 0.91686 1.49448 0.92972 0.92612 1.25015 0.98054 0.95547 0.95824 1.69956 1.09351 1.50399 1.23913 0.86720 0.79093 0.78579 0.83950 1.20345 1.21427 1.20248 1.21996 0.93518 1.01955 0.99221 1.21508 0.96547 0.88261 0.93772 1.70281 1.15140 1.19152 1.08189 1.23639 1.03083 0.87554 0.91604 1.20247 1.02415 1.03341 0.86774 0.91115 0.90105 0.91395 0.88560 0.88432 0.79201 0.90879 0.90114 0.92714 0.89950 0.92236 0.96912 0.96659 0.93070 0.92234 0.91268 0.89600 0.91073 0.90018 0.88609 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 10.24 37.16 0.38 -0.79 16 2 C 0.09 0.60 6.40 -4.04 -0.03 0.57 16 3 N -0.45 -4.81 2.75 -113.90 -0.31 -5.12 16 4 C 0.07 0.83 11.31 -16.56 -0.19 0.64 16 5 C -0.56 -8.37 7.13 -17.81 -0.13 -8.50 16 6 S 2.72 42.81 5.85 -107.50 -0.63 42.18 16 7 O -0.95 -17.36 16.73 -57.17 -0.96 -18.31 16 8 O -0.96 -15.77 16.55 -57.17 -0.95 -16.71 16 9 N -0.99 -14.97 3.28 -113.28 -0.37 -15.34 16 10 C 0.12 1.72 6.41 -3.48 -0.02 1.69 16 11 C -0.12 -2.04 5.21 -26.38 -0.14 -2.17 16 12 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 13 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 14 C -0.52 -13.89 8.39 -34.44 -0.29 -14.18 16 15 H 0.06 1.45 7.06 -52.49 -0.37 1.08 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 18 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 C -0.13 -2.18 5.36 -26.61 -0.14 -2.32 16 23 C 0.12 1.87 6.37 -3.71 -0.02 1.85 16 24 N -0.41 -6.46 11.25 -10.02 -0.11 -6.58 16 25 C 0.21 2.56 7.90 -155.41 -1.23 1.33 16 26 C -0.07 -0.56 10.04 36.00 0.36 -0.20 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.51 7.63 -51.93 -0.40 0.12 16 30 H 0.10 0.41 7.94 -51.93 -0.41 -0.01 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.19 1.80 8.06 -52.48 -0.42 1.38 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.05 7.12 -51.93 -0.37 0.68 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.51 6.91 -51.93 -0.36 1.16 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.09 1.27 7.13 -51.93 -0.37 0.90 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.08 0.45 7.33 -51.93 -0.38 0.07 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -35.99 390.64 -11.29 -47.28 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -7.71 Total: -1.98 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -1.85 Total: -21.74 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.06 Total: -52.74 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -1.90 Total: -35.02 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 42.81 SS G_CDS: -0.63 Total: 42.18 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.99 -11.29 -47.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399370208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.016 kcal (2) G-P(sol) polarization free energy of solvation -35.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds