Wall clock time and date at job start Wed Apr 1 2020 00:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.36879 * 126.40033 * 265.02702 * 3 2 1 5 5 C 1.34675 * 106.81988 * 180.02562 * 4 3 2 6 6 S 1.76199 * 125.98989 * 180.02562 * 5 4 3 7 7 O 1.42105 * 106.39915 * 203.53932 * 6 5 4 8 8 O 1.42100 * 106.40012 * 336.45573 * 6 5 4 9 9 N 1.65598 * 107.21976 * 89.99605 * 6 5 4 10 10 C 1.46920 * 120.62752 * 269.71771 * 9 6 5 11 11 C 1.53632 * 108.54301 * 126.37288 * 10 9 6 12 12 C 1.53036 * 109.24240 * 54.84965 * 11 10 9 13 13 C 1.53001 * 109.46155 * 178.49130 * 12 11 10 14 14 C 1.50696 * 109.47279 * 295.07370 * 13 12 11 15 15 H 1.08000 * 119.99946 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00092 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99830 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99899 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47143 * 60.00280 * 18 16 14 20 20 H 1.48502 * 109.46904 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47310 * 300.00075 * 18 16 14 22 22 C 1.53039 * 109.53966 * 298.51754 * 12 11 10 23 23 C 1.46923 * 120.63008 * 89.99940 * 9 6 5 24 24 N 1.34132 * 108.01601 * 359.97438 * 5 4 3 25 25 C 1.30493 * 109.26007 * 359.73026 * 24 5 4 26 26 C 1.50696 * 125.65484 * 180.29184 * 25 24 5 27 27 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 32 32 H 1.08004 * 126.59316 * 0.03364 * 4 3 2 33 33 H 1.09005 * 109.59152 * 246.20264 * 10 9 6 34 34 H 1.08997 * 109.59171 * 6.62891 * 10 9 6 35 35 H 1.09002 * 109.62880 * 294.86386 * 11 10 9 36 36 H 1.09001 * 109.43431 * 174.72356 * 11 10 9 37 37 H 1.09003 * 109.44648 * 58.53073 * 12 11 10 38 38 H 1.09004 * 109.46448 * 55.07202 * 13 12 11 39 39 H 1.09001 * 109.47142 * 175.07167 * 13 12 11 40 40 H 0.96995 * 119.99949 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.49881 * 301.41157 * 22 12 11 42 42 H 1.09000 * 109.52305 * 181.32885 * 22 12 11 43 43 H 1.08998 * 109.58884 * 353.37220 * 23 9 6 44 44 H 1.08999 * 109.58685 * 113.65332 * 23 9 6 45 45 H 1.09000 * 109.47221 * 270.17745 * 26 25 24 46 46 H 1.09007 * 109.46854 * 30.17396 * 26 25 24 47 47 H 1.09001 * 109.47535 * 150.17412 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3790 2.1152 -1.0976 5 6 2.7656 3.3244 -0.6479 6 16 3.3310 4.6660 -1.6404 7 8 4.1232 5.4863 -0.7925 8 8 3.8192 4.0949 -2.8465 9 7 2.0026 5.5647 -2.0527 10 6 1.2521 5.2711 -3.2811 11 6 -0.2277 5.0796 -2.9155 12 6 -0.7232 6.3124 -2.1561 13 6 -2.2068 6.1434 -1.8224 14 6 -3.0081 6.1103 -3.0982 15 1 -2.5092 6.2012 -4.0517 16 6 -4.3782 5.9639 -3.0482 17 7 -4.9858 5.8537 -1.8870 18 14 -5.3715 5.9236 -4.6296 19 1 -4.9196 4.7852 -5.4691 20 1 -6.8113 5.7582 -4.3057 21 1 -5.1734 7.1949 -5.3712 22 6 0.0760 6.4711 -0.8607 23 6 1.5559 6.6748 -1.2001 24 7 2.6436 3.3287 0.6879 25 6 2.1907 2.1702 1.0825 26 6 1.9105 1.7765 2.5098 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.3577 1.7877 -2.1266 33 1 1.3543 6.1019 -3.9793 34 1 1.6384 4.3591 -3.7362 35 1 -0.3382 4.1962 -2.2866 36 1 -0.8130 4.9539 -3.8265 37 1 -0.5893 7.1988 -2.7763 38 1 -2.3525 5.2106 -1.2774 39 1 -2.5383 6.9795 -1.2067 40 1 -5.9495 5.7504 -1.8518 41 1 -0.0373 5.5746 -0.2511 42 1 -0.2929 7.3355 -0.3086 43 1 2.1428 6.6893 -0.2817 44 1 1.6848 7.6180 -1.7310 45 1 2.8075 1.3398 2.9490 46 1 1.6196 2.6590 3.0797 47 1 1.1019 1.0460 2.5332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399370208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:45 Heat of formation + Delta-G solvation = -58.000848 kcal Electronic energy + Delta-G solvation = -29005.124039 eV Core-core repulsion = 25121.140540 eV Total energy + Delta-G solvation = -3883.983499 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.31285 -39.62318 -38.35437 -36.96179 -36.11382 -35.68594 -33.76751 -32.92900 -31.95864 -31.19694 -29.45863 -28.28528 -25.96161 -24.95784 -24.17817 -23.33981 -22.85626 -21.04460 -20.96837 -19.80138 -18.97734 -18.47529 -18.31344 -17.13963 -16.87555 -16.72079 -16.52035 -15.64604 -15.48604 -15.28676 -15.16573 -15.05988 -14.78548 -14.62848 -14.36944 -14.04516 -13.96370 -13.61751 -13.57579 -13.40481 -13.33514 -13.24555 -13.08581 -12.96677 -12.80866 -12.62411 -12.57276 -12.46271 -12.31471 -12.16887 -12.03709 -11.75279 -11.31485 -11.22462 -11.02978 -10.92424 -10.80564 -10.49653 -9.96976 -9.78713 -8.14547 -6.23773 -0.62217 0.56168 1.42269 1.44480 1.45730 1.51856 1.64439 2.08949 2.44015 2.74275 3.08423 3.19067 3.56811 3.68187 3.72522 3.74964 3.98318 4.05090 4.08441 4.14222 4.29450 4.31845 4.43310 4.47396 4.52482 4.61448 4.63852 4.65453 4.71833 4.83926 4.91876 4.93982 4.98224 5.05555 5.12347 5.16470 5.27132 5.30414 5.35908 5.38674 5.43568 5.60633 5.68452 5.85703 5.92821 6.03363 6.32312 6.72111 6.92841 7.44810 8.97221 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010688 B = 0.003855 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.252944 B = 7261.118234 C = 8628.370380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.088 3.912 3 N -0.445 5.445 4 C 0.070 3.930 5 C -0.586 4.586 6 S 2.740 3.260 7 O -0.981 6.981 8 O -0.971 6.971 9 N -0.990 5.990 10 C 0.121 3.879 11 C -0.110 4.110 12 C -0.073 4.073 13 C 0.036 3.964 14 C -0.526 4.526 15 H 0.066 0.934 16 C -0.001 4.001 17 N -0.937 5.937 18 Si 0.958 3.042 19 H -0.265 1.265 20 H -0.289 1.289 21 H -0.268 1.268 22 C -0.120 4.120 23 C 0.128 3.872 24 N -0.459 5.459 25 C 0.202 3.798 26 C -0.070 4.070 27 H 0.046 0.954 28 H 0.105 0.895 29 H 0.056 0.944 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.217 0.783 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.064 0.936 38 H -0.018 1.018 39 H -0.016 1.016 40 H 0.260 0.740 41 H 0.044 0.956 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.088 0.912 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.724 -13.900 3.847 20.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.032 4.032 3 N -0.125 5.125 4 C -0.073 4.073 5 C -0.798 4.798 6 S 2.829 3.171 7 O -0.971 6.971 8 O -0.961 6.961 9 N -0.829 5.829 10 C -0.003 4.003 11 C -0.149 4.149 12 C -0.091 4.091 13 C -0.002 4.002 14 C -0.564 4.564 15 H 0.085 0.915 16 C -0.198 4.198 17 N -0.578 5.578 18 Si 0.783 3.217 19 H -0.190 1.190 20 H -0.215 1.215 21 H -0.193 1.193 22 C -0.159 4.159 23 C 0.003 3.997 24 N -0.177 5.177 25 C -0.064 4.064 26 C -0.128 4.128 27 H 0.065 0.935 28 H 0.124 0.876 29 H 0.075 0.925 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.233 0.767 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.001 0.999 39 H 0.003 0.997 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.120 0.880 46 H 0.107 0.893 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 15.566 -13.257 4.222 20.878 hybrid contribution -1.837 -0.897 -0.569 2.122 sum 13.729 -14.154 3.653 20.054 Atomic orbital electron populations 1.22192 0.93568 1.04724 1.02421 1.22432 0.95929 0.77202 1.07625 1.46088 1.46203 1.14242 1.05949 1.23083 0.98302 0.90964 0.94928 1.33269 1.26042 1.16950 1.03499 1.00440 0.72438 0.72168 0.72076 1.93498 1.66875 1.67535 1.69169 1.93537 1.78127 1.79713 1.44740 1.57578 1.48503 1.44100 1.32684 1.21759 0.90824 1.03109 0.84617 1.21837 0.94929 0.97435 1.00694 1.21010 0.94469 0.98024 0.95617 1.18992 0.91879 0.93995 0.95285 1.21650 0.92217 1.48586 0.93950 0.91539 1.25932 0.99472 0.95210 0.99228 1.70108 1.09614 1.51728 1.26395 0.85602 0.77153 0.79176 0.79729 1.18993 1.21466 1.19314 1.21880 0.94866 1.01382 0.97782 1.21491 0.94653 0.89162 0.94388 1.70204 1.17324 1.21430 1.08753 1.24352 1.01642 0.87034 0.93415 1.20440 1.04242 1.03759 0.84339 0.93466 0.87591 0.92509 0.85743 0.86191 0.76689 0.89183 0.88026 0.93659 0.90789 0.91802 0.99946 0.99713 0.93112 0.93709 0.91101 0.89364 0.89080 0.87963 0.89349 0.88146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.24 71.98 0.74 -1.25 16 2 C 0.09 0.86 6.40 86.38 0.55 1.41 16 3 N -0.44 -8.77 2.75 -514.28 -1.41 -10.18 16 4 C 0.07 1.65 11.31 83.09 0.94 2.59 16 5 C -0.59 -17.53 7.13 83.52 0.60 -16.94 16 6 S 2.74 84.89 5.85 -56.49 -0.33 84.56 16 7 O -0.98 -36.10 16.73 -128.00 -2.14 -38.24 16 8 O -0.97 -30.64 16.55 -128.00 -2.12 -32.76 16 9 N -0.99 -29.07 3.28 -512.30 -1.68 -30.76 16 10 C 0.12 3.35 6.41 86.51 0.55 3.90 16 11 C -0.11 -3.78 5.21 30.82 0.16 -3.62 16 12 C -0.07 -2.85 2.10 -10.77 -0.02 -2.87 16 13 C 0.04 1.83 4.45 29.85 0.13 1.96 16 14 C -0.53 -28.65 8.39 25.60 0.21 -28.43 16 15 H 0.07 3.41 7.06 -2.91 -0.02 3.39 16 16 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 17 N -0.94 -56.59 13.29 21.45 0.28 -56.30 16 18 Si 0.96 43.27 29.54 68.60 2.03 45.29 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 22 C -0.12 -4.16 5.36 30.67 0.16 -4.00 16 23 C 0.13 3.80 6.37 86.36 0.55 4.35 16 24 N -0.46 -14.54 11.25 -185.62 -2.09 -16.62 16 25 C 0.20 4.82 7.90 138.13 1.09 5.91 16 26 C -0.07 -1.02 10.04 71.23 0.72 -0.30 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.79 7.63 -2.39 -0.02 0.77 16 30 H 0.12 0.56 7.94 -2.39 -0.02 0.54 16 31 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.22 3.64 8.06 -2.91 -0.02 3.61 16 33 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.10 2.41 7.12 -2.39 -0.02 2.39 16 35 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 2.66 6.91 -2.39 -0.02 2.65 16 37 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 38 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 39 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 40 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 42 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.09 2.61 7.13 -2.39 -0.02 2.60 16 44 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 47 H 0.10 0.94 7.33 -2.39 -0.02 0.93 16 Total: -1.00 -79.90 390.64 0.33 -79.57 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.95 Total: 12.35 kcal Atomic # 6 Polarization: -43.76 SS G_CDS: 6.85 Total: -36.91 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -4.90 Total: -113.87 kcal Atomic # 8 Polarization: -66.74 SS G_CDS: -4.26 Total: -71.00 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 84.89 SS G_CDS: -0.33 Total: 84.56 kcal Total: -79.90 0.33 -79.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399370208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.568 kcal (2) G-P(sol) polarization free energy of solvation -79.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds