Wall clock time and date at job start Wed Apr 1 2020 00:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47587 * 2 1 4 4 C 1.52995 * 109.47312 * 239.99623 * 2 1 3 5 5 C 1.53005 * 109.47363 * 175.00042 * 4 2 1 6 6 C 1.52995 * 109.47363 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47189 * 180.02562 * 6 5 4 8 8 C 1.38680 * 120.41637 * 269.72188 * 7 6 5 9 9 C 1.38629 * 118.41570 * 179.78276 * 8 7 6 10 10 C 1.38221 * 119.16513 * 0.51584 * 9 8 7 11 11 N 1.31858 * 120.76058 * 359.72076 * 10 9 8 12 12 C 1.31879 * 121.72535 * 0.02562 * 11 10 9 13 13 N 1.46506 * 109.46977 * 119.99746 * 2 1 3 14 14 S 1.65602 * 120.00056 * 265.00052 * 13 2 1 15 15 O 1.42095 * 106.40010 * 311.45866 * 14 13 2 16 16 O 1.42098 * 106.40092 * 178.54071 * 14 13 2 17 17 N 1.65597 * 107.21619 * 64.99965 * 14 13 2 18 18 C 1.46506 * 120.00079 * 90.00287 * 17 14 13 19 19 C 1.46499 * 119.99926 * 269.72326 * 17 14 13 20 20 C 1.50704 * 109.46882 * 265.27515 * 19 17 14 21 21 H 1.07992 * 120.00253 * 0.02562 * 20 19 17 22 22 C 1.37883 * 119.99387 * 180.02562 * 20 19 17 23 23 N 1.31513 * 120.00317 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99593 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47347 * 59.99966 * 24 22 20 26 26 H 1.48498 * 109.47065 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47381 * 299.99760 * 24 22 20 28 28 H 1.09001 * 109.47130 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47210 * 300.00258 * 1 2 3 30 30 H 1.09000 * 109.46988 * 59.99922 * 1 2 3 31 31 H 1.09002 * 109.47440 * 294.99752 * 4 2 1 32 32 H 1.09001 * 109.47546 * 55.00317 * 4 2 1 33 33 H 1.09001 * 109.47227 * 300.00652 * 5 4 2 34 34 H 1.09007 * 109.46794 * 60.00064 * 5 4 2 35 35 H 1.08996 * 109.47216 * 300.00108 * 6 5 4 36 36 H 1.09001 * 109.46938 * 59.99822 * 6 5 4 37 37 H 1.07993 * 120.79127 * 0.02562 * 8 7 6 38 38 H 1.08002 * 120.41320 * 180.21831 * 9 8 7 39 39 H 1.07995 * 119.61923 * 179.75046 * 10 9 8 40 40 H 1.08001 * 119.61078 * 179.97438 * 12 11 10 41 41 H 0.97000 * 119.99999 * 84.99734 * 13 2 1 42 42 H 1.08999 * 109.46892 * 269.72437 * 18 17 14 43 43 H 1.09000 * 109.46803 * 29.71610 * 18 17 14 44 44 H 1.09000 * 109.47214 * 149.72403 * 18 17 14 45 45 H 1.08991 * 109.47463 * 25.27752 * 19 17 14 46 46 H 1.09000 * 109.46878 * 145.27981 * 19 17 14 47 47 H 0.97005 * 120.00079 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6134 -1.3136 6 6 4.0748 -1.3341 -2.5631 7 6 5.5768 -1.2283 -2.6262 8 6 6.1788 -0.1673 -3.2858 9 6 7.5635 -0.1085 -3.3144 10 6 8.2930 -1.1079 -2.6983 11 7 7.6865 -2.1049 -2.0844 12 6 6.3715 -2.1904 -2.0329 13 7 2.0183 -0.6906 1.1963 14 16 2.4121 0.1772 2.5506 15 8 3.2436 1.2443 2.1156 16 8 2.8123 -0.7697 3.5316 17 7 1.0167 0.8704 3.1115 18 6 0.1805 0.1548 4.0784 19 6 0.6215 2.2019 2.6454 20 6 1.1115 3.2413 3.6205 21 1 1.6625 2.9402 4.4992 22 6 0.8563 4.5767 3.3907 23 7 0.1857 4.9433 2.3204 24 14 1.4641 5.8650 4.5990 25 1 2.9443 5.7941 4.6953 26 1 1.0624 7.2146 4.1273 27 1 0.8684 5.6107 5.9353 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.7517 -1.7716 -1.2055 32 1 1.6055 -0.2619 -2.1370 33 1 3.8533 0.4369 -1.3572 34 1 3.9994 -1.0729 -0.4258 35 1 3.7865 -2.3843 -2.5198 36 1 3.6402 -0.8742 -3.4506 37 1 5.5830 0.5970 -3.7624 38 1 8.0660 0.7054 -3.8160 39 1 9.3721 -1.0716 -2.7196 40 1 5.9104 -3.0222 -1.5211 41 1 2.1109 -1.6562 1.1950 42 1 -0.5542 -0.4495 3.5463 43 1 0.8073 -0.4924 4.6919 44 1 -0.3337 0.8736 4.7163 45 1 1.0595 2.3885 1.6650 46 1 -0.4649 2.2542 2.5741 47 1 0.0059 5.8828 2.1590 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416540213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:32 Heat of formation + Delta-G solvation = -86.145141 kcal Electronic energy + Delta-G solvation = -28118.603415 eV Core-core repulsion = 24233.399488 eV Total energy + Delta-G solvation = -3885.203927 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.08209 -38.65248 -38.09879 -37.20360 -36.83151 -35.58753 -34.49243 -33.06924 -32.06716 -30.54632 -29.62925 -27.38456 -26.75200 -24.48506 -24.18590 -23.95660 -22.13389 -21.86916 -20.50095 -19.06232 -18.35459 -18.19656 -17.96884 -17.43602 -17.25704 -16.66111 -16.25720 -16.03838 -15.45114 -15.22122 -15.06343 -15.00031 -14.70571 -14.45369 -14.16580 -14.01832 -13.92505 -13.91267 -13.56098 -13.30952 -13.13462 -13.04146 -12.99492 -12.94312 -12.85712 -12.62726 -12.46895 -12.39338 -12.32519 -11.99191 -11.90268 -11.77138 -11.59782 -11.48231 -10.70802 -10.59481 -10.47777 -10.33836 -9.83214 -9.76221 -8.20146 -6.31256 -0.28560 0.18933 0.36116 1.38219 1.41331 1.48408 2.09127 2.40197 2.67706 2.86737 3.10746 3.47340 3.55544 3.72628 3.91608 3.93602 4.08118 4.10791 4.13782 4.20242 4.24735 4.38414 4.44709 4.59925 4.68057 4.72549 4.74056 4.84766 4.88674 4.90558 4.96125 5.04227 5.07684 5.09956 5.16139 5.20519 5.22439 5.37903 5.44422 5.48421 5.50096 5.53720 5.71087 5.82401 5.90192 6.12995 6.29162 6.76413 7.03798 7.37143 8.86741 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012161 B = 0.002994 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.823251 B = 9350.453044 C =10064.855539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 H 0.059 0.941 4 C -0.108 4.108 5 C -0.119 4.119 6 C -0.067 4.067 7 C -0.138 4.138 8 C -0.087 4.087 9 C -0.172 4.172 10 C 0.072 3.928 11 N -0.516 5.516 12 C 0.079 3.921 13 N -1.106 6.106 14 S 2.794 3.206 15 O -1.012 7.012 16 O -1.017 7.017 17 N -1.003 6.003 18 C 0.091 3.909 19 C 0.278 3.722 20 C -0.554 4.554 21 H 0.047 0.953 22 C 0.016 3.984 23 N -0.920 5.920 24 Si 0.951 3.049 25 H -0.280 1.280 26 H -0.274 1.274 27 H -0.265 1.265 28 H 0.082 0.918 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.152 0.848 38 H 0.159 0.841 39 H 0.173 0.827 40 H 0.165 0.835 41 H 0.424 0.576 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.020 0.980 46 H 0.029 0.971 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.333 -14.527 -13.991 20.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.034 3.966 3 H 0.077 0.923 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.105 4.105 7 C -0.139 4.139 8 C -0.113 4.113 9 C -0.191 4.191 10 C -0.085 4.085 11 N -0.225 5.225 12 C -0.078 4.078 13 N -0.870 5.870 14 S 2.802 3.198 15 O -0.995 6.995 16 O -1.001 7.001 17 N -0.845 5.845 18 C -0.055 4.055 19 C 0.154 3.846 20 C -0.593 4.593 21 H 0.066 0.934 22 C -0.184 4.184 23 N -0.559 5.559 24 Si 0.776 3.224 25 H -0.206 1.206 26 H -0.199 1.199 27 H -0.190 1.190 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.169 0.831 38 H 0.177 0.823 39 H 0.190 0.810 40 H 0.182 0.818 41 H 0.260 0.740 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.038 0.962 46 H 0.047 0.953 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.608 -14.735 -13.288 20.370 hybrid contribution -0.307 1.390 0.373 1.471 sum 4.301 -13.345 -12.915 19.063 Atomic orbital electron populations 1.22322 0.94146 1.03560 1.02813 1.20957 0.94805 0.95694 0.85106 0.92252 1.21830 0.94389 1.02346 0.96121 1.21599 0.96261 1.00172 0.97658 1.20565 0.88363 1.02816 0.98718 1.21213 0.98572 0.95802 0.98360 1.21918 0.95424 0.97310 0.96599 1.22482 0.94966 1.00759 1.00942 1.23177 1.01710 0.89999 0.93580 1.67656 1.12331 1.25334 1.17173 1.22990 0.89084 0.98856 0.96823 1.55744 1.83667 1.19930 1.27659 1.01261 0.73355 0.72149 0.73057 1.93565 1.66206 1.56965 1.82765 1.93494 1.82417 1.64020 1.60156 1.57472 1.43230 1.27461 1.56323 1.21533 0.95172 0.96512 0.92268 1.18566 0.95583 0.76899 0.93502 1.21843 1.35784 0.92736 1.08942 0.93450 1.25666 0.95152 1.00325 0.97259 1.69978 1.40763 1.17657 1.27529 0.85729 0.78609 0.78390 0.79722 1.20577 1.19907 1.18966 0.89904 0.93678 0.90367 0.88543 0.88514 0.93592 0.93058 0.88711 0.88972 0.83066 0.82334 0.81020 0.81821 0.73964 0.90772 0.91068 0.91247 0.96222 0.95336 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.85 9.52 71.98 0.69 -3.16 16 2 C 0.14 3.55 2.93 44.99 0.13 3.68 16 3 H 0.06 1.94 7.15 -2.39 -0.02 1.93 16 4 C -0.11 -1.79 4.81 30.59 0.15 -1.65 16 5 C -0.12 -2.36 5.08 30.59 0.16 -2.21 16 6 C -0.07 -0.96 5.37 29.85 0.16 -0.80 16 7 C -0.14 -2.61 5.15 -19.77 -0.10 -2.72 16 8 C -0.09 -1.56 9.86 22.47 0.22 -1.33 16 9 C -0.17 -2.96 10.11 22.36 0.23 -2.73 16 10 C 0.07 1.43 11.18 84.68 0.95 2.38 16 11 N -0.52 -12.59 10.36 -195.86 -2.03 -14.62 16 12 C 0.08 1.70 10.86 84.67 0.92 2.62 16 13 N -1.11 -30.05 4.98 -169.40 -0.84 -30.90 16 14 S 2.79 110.51 6.08 -56.49 -0.34 110.16 16 15 O -1.01 -49.78 16.44 -128.00 -2.10 -51.88 16 16 O -1.02 -42.32 16.74 -128.00 -2.14 -44.46 16 17 N -1.00 -40.99 2.89 -543.22 -1.57 -42.56 16 18 C 0.09 3.01 10.68 127.77 1.36 4.37 16 19 C 0.28 13.79 3.96 85.63 0.34 14.13 16 20 C -0.55 -31.44 9.38 25.60 0.24 -31.20 16 21 H 0.05 2.73 7.81 -2.91 -0.02 2.70 16 22 C 0.02 0.90 5.46 84.66 0.46 1.36 16 23 N -0.92 -53.15 13.29 21.45 0.28 -52.87 16 24 Si 0.95 44.73 29.54 68.60 2.03 46.76 16 25 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 26 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 27 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.04 1.28 6.62 -2.39 -0.02 1.27 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 1.17 7.75 -2.38 -0.02 1.15 16 35 H 0.09 1.01 8.09 -2.39 -0.02 0.99 16 36 H 0.09 1.03 8.09 -2.39 -0.02 1.01 16 37 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 38 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 39 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 40 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.42 8.68 8.84 -96.74 -0.85 7.82 16 42 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.07 2.26 7.01 -2.39 -0.02 2.25 16 44 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 45 H 0.02 1.05 7.26 -2.39 -0.02 1.03 16 46 H 0.03 1.43 8.11 -2.39 -0.02 1.41 16 47 H 0.27 14.58 8.31 -92.70 -0.77 13.80 16 Total: -1.00 -77.13 400.21 -0.72 -77.85 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.10 Total: 19.77 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: 5.90 Total: -17.26 kcal Atomic # 7 Polarization: -136.79 SS G_CDS: -4.16 Total: -140.95 kcal Atomic # 8 Polarization: -92.10 SS G_CDS: -4.25 Total: -96.35 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 110.51 SS G_CDS: -0.34 Total: 110.16 kcal Total: -77.13 -0.72 -77.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416540213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.294 kcal (2) G-P(sol) polarization free energy of solvation -77.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds