Wall clock time and date at job start Wed Apr 1 2020 00:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47716 * 2 1 4 4 C 1.53007 * 109.47124 * 120.00207 * 2 1 3 5 5 C 1.52997 * 109.47180 * 184.78848 * 4 2 1 6 6 C 1.52993 * 109.47203 * 184.39388 * 5 4 2 7 7 C 1.50706 * 109.47078 * 180.02562 * 6 5 4 8 8 C 1.38673 * 120.41424 * 269.72019 * 7 6 5 9 9 C 1.38630 * 118.41872 * 179.78744 * 8 7 6 10 10 C 1.38234 * 119.15704 * 0.50712 * 9 8 7 11 11 N 1.31847 * 120.76801 * 359.73148 * 10 9 8 12 12 C 1.31897 * 121.72348 * 359.97438 * 11 10 9 13 13 N 1.46499 * 109.46924 * 239.99559 * 2 1 3 14 14 S 1.65599 * 119.99658 * 96.95504 * 13 2 1 15 15 O 1.42103 * 106.40303 * 47.94716 * 14 13 2 16 16 O 1.42101 * 106.40554 * 180.86549 * 14 13 2 17 17 N 1.65601 * 107.21989 * 294.40569 * 14 13 2 18 18 C 1.46496 * 120.00088 * 86.39561 * 17 14 13 19 19 C 1.46506 * 119.99914 * 266.40155 * 17 14 13 20 20 C 1.50697 * 109.47183 * 94.36855 * 19 17 14 21 21 H 1.08000 * 119.99730 * 3.59188 * 20 19 17 22 22 C 1.37877 * 119.99792 * 183.58710 * 20 19 17 23 23 N 1.31507 * 120.00320 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99572 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47357 * 60.00230 * 24 22 20 26 26 H 1.48503 * 109.46625 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47276 * 299.99960 * 24 22 20 28 28 H 1.08991 * 109.47562 * 59.99773 * 1 2 3 29 29 H 1.09000 * 109.47417 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46918 * 299.99489 * 1 2 3 31 31 H 1.08998 * 109.46704 * 304.78841 * 4 2 1 32 32 H 1.09002 * 109.46759 * 64.79115 * 4 2 1 33 33 H 1.09007 * 109.46959 * 304.39323 * 5 4 2 34 34 H 1.09003 * 109.47138 * 64.39239 * 5 4 2 35 35 H 1.08997 * 109.47233 * 299.99849 * 6 5 4 36 36 H 1.08994 * 109.47341 * 60.00170 * 6 5 4 37 37 H 1.07993 * 120.79397 * 0.02562 * 8 7 6 38 38 H 1.08000 * 120.42090 * 180.22413 * 9 8 7 39 39 H 1.08004 * 119.61362 * 179.75453 * 10 9 8 40 40 H 1.07991 * 119.61277 * 179.97438 * 12 11 10 41 41 H 0.96998 * 120.00392 * 276.95741 * 13 2 1 42 42 H 1.09006 * 109.46837 * 90.00300 * 18 17 14 43 43 H 1.09003 * 109.47476 * 210.00126 * 18 17 14 44 44 H 1.08996 * 109.47187 * 330.00763 * 18 17 14 45 45 H 1.09006 * 109.46643 * 214.36957 * 19 17 14 46 46 H 1.09003 * 109.46987 * 334.36613 * 19 17 14 47 47 H 0.97002 * 120.00450 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5652 -0.6179 1.3109 6 6 4.0839 -1.4308 2.4988 7 6 5.5862 -1.3283 2.5599 8 6 6.3804 -2.2483 1.8920 9 6 7.7576 -2.1125 1.9726 10 6 8.2898 -1.0781 2.7194 11 7 7.5039 -0.2245 3.3456 12 6 6.1897 -0.3197 3.2863 13 7 2.0183 -0.6907 -1.1961 14 16 2.4579 0.1807 -2.5339 15 8 3.3003 1.2277 -2.0717 16 8 2.8609 -0.7654 -3.5146 17 7 1.0887 0.9058 -3.1184 18 6 0.6630 2.2031 -2.5874 19 6 0.3029 0.2499 -4.1666 20 6 -0.8073 -0.5504 -3.5357 21 1 -0.9525 -0.5223 -2.4659 22 6 -1.6377 -1.3182 -4.3243 23 7 -1.4607 -1.3526 -5.6269 24 14 -3.0144 -2.3095 -3.5422 25 1 -3.9415 -1.3935 -2.8306 26 1 -3.7568 -3.0440 -4.5980 27 1 -2.4388 -3.2797 -2.5764 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6083 -0.2594 2.1371 32 1 1.7484 -1.7708 1.2073 33 1 3.9935 -1.0092 0.3881 34 1 3.8540 0.4263 1.4314 35 1 3.6556 -1.0395 3.4215 36 1 3.7952 -2.4748 2.3783 37 1 5.9365 -3.0493 1.3195 38 1 8.4066 -2.8087 1.4622 39 1 9.3618 -0.9678 2.7905 40 1 5.5784 0.3980 3.8130 41 1 2.0840 -1.6584 -1.2046 42 1 1.1167 3.0022 -3.1737 43 1 -0.4227 2.2811 -2.6457 44 1 0.9783 2.2913 -1.5478 45 1 -0.1234 1.0049 -4.8273 46 1 0.9477 -0.4143 -4.7422 47 1 -2.0451 -1.8925 -6.1818 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416540214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:36 Heat of formation + Delta-G solvation = -63.518312 kcal Electronic energy + Delta-G solvation = -28250.615067 eV Core-core repulsion = 24366.392313 eV Total energy + Delta-G solvation = -3884.222754 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.38436 -37.55765 -36.52787 -35.52596 -35.19986 -34.71401 -32.49043 -32.33991 -31.14818 -29.48378 -27.79665 -26.61021 -25.07789 -23.77753 -23.13272 -22.27697 -21.27622 -20.98517 -18.99197 -17.34209 -17.28788 -16.78284 -16.65431 -16.33087 -15.95373 -15.39425 -15.13119 -14.63385 -14.41362 -14.28445 -13.87036 -13.63014 -13.46129 -13.30825 -13.28598 -13.22712 -12.45134 -12.43769 -12.25697 -12.09688 -11.90922 -11.77167 -11.67264 -11.48231 -11.26812 -11.18120 -11.12827 -11.09312 -10.77469 -10.72056 -10.63963 -10.50248 -10.10751 -9.98384 -9.72147 -9.64629 -9.22496 -9.06265 -8.49946 -8.03866 -6.11279 -4.17743 0.88867 1.06687 1.33012 3.23942 3.29853 3.30341 3.52725 3.58629 4.18696 4.21957 4.35131 4.47835 4.56660 4.70755 4.75943 4.82144 4.94834 4.99406 5.08344 5.21177 5.23525 5.31661 5.35766 5.47494 5.51478 5.59517 5.63523 5.74391 5.78044 5.81408 5.88642 5.95237 6.03232 6.09222 6.15981 6.22588 6.25196 6.43902 6.49145 6.55124 6.63664 7.22509 7.39650 7.48742 7.66978 7.75424 7.86512 8.15234 8.87361 9.48140 10.96926 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016566 B = 0.002840 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.828876 B = 9855.694543 C =10292.171352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.151 3.849 3 H 0.085 0.915 4 C -0.120 4.120 5 C -0.117 4.117 6 C -0.077 4.077 7 C -0.129 4.129 8 C -0.075 4.075 9 C -0.170 4.170 10 C 0.088 3.912 11 N -0.485 5.485 12 C 0.099 3.901 13 N -1.119 6.119 14 S 2.787 3.213 15 O -1.002 7.002 16 O -0.980 6.980 17 N -0.996 5.996 18 C 0.104 3.896 19 C 0.245 3.755 20 C -0.541 4.541 21 H 0.068 0.932 22 C 0.063 3.937 23 N -0.890 5.890 24 Si 0.894 3.106 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.413 0.587 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.051 0.949 45 H 0.035 0.965 46 H 0.052 0.948 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.980 0.293 17.188 19.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.044 3.956 3 H 0.103 0.897 4 C -0.159 4.159 5 C -0.155 4.155 6 C -0.115 4.115 7 C -0.131 4.131 8 C -0.101 4.101 9 C -0.190 4.190 10 C -0.069 4.069 11 N -0.193 5.193 12 C -0.058 4.058 13 N -0.878 5.878 14 S 2.794 3.206 15 O -0.985 6.985 16 O -0.964 6.964 17 N -0.839 5.839 18 C -0.043 4.043 19 C 0.123 3.877 20 C -0.580 4.580 21 H 0.086 0.914 22 C -0.140 4.140 23 N -0.528 5.528 24 Si 0.722 3.278 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.171 0.829 40 H 0.171 0.829 41 H 0.246 0.754 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.070 0.930 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.158 1.188 17.121 20.470 hybrid contribution -1.671 -1.822 -0.111 2.474 sum 9.487 -0.633 17.010 19.487 Atomic orbital electron populations 1.22466 0.94961 1.03348 1.02892 1.20710 0.94175 0.96060 0.84669 0.89737 1.21877 0.95139 1.01498 0.97432 1.21619 0.95528 1.00586 0.97752 1.20607 0.89534 1.01606 0.99775 1.20989 0.97474 0.96367 0.98233 1.21568 0.93616 0.98199 0.96706 1.22171 0.95939 1.00113 1.00756 1.22744 1.00041 0.90829 0.93283 1.67676 1.05734 1.26276 1.19617 1.22687 0.90769 0.96126 0.96231 1.56061 1.83330 1.19352 1.29041 1.01677 0.73450 0.72977 0.72470 1.93545 1.65139 1.57495 1.82321 1.93589 1.81742 1.62805 1.58272 1.57599 1.45587 1.29025 1.51643 1.21274 1.01575 0.84590 0.96860 1.19211 0.90763 0.92778 0.84945 1.21617 1.14361 1.27616 0.94428 0.91403 1.24969 0.97699 0.96552 0.94762 1.69923 1.38696 1.40316 1.03906 0.86636 0.82020 0.80231 0.78930 1.20244 1.21275 1.20191 0.90206 0.91888 0.92379 0.90762 0.91142 0.91370 0.91404 0.90569 0.90667 0.84775 0.84800 0.82935 0.82883 0.75438 0.93726 0.90788 0.93038 0.94700 0.92962 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 9.20 37.16 0.34 -1.96 16 2 C 0.15 1.91 2.74 -67.93 -0.19 1.72 16 3 H 0.08 1.08 6.77 -51.93 -0.35 0.73 16 4 C -0.12 -1.15 4.83 -26.73 -0.13 -1.28 16 5 C -0.12 -1.17 5.13 -26.74 -0.14 -1.31 16 6 C -0.08 -0.62 5.37 -27.88 -0.15 -0.77 16 7 C -0.13 -1.23 5.15 -104.48 -0.54 -1.77 16 8 C -0.07 -0.70 9.86 -39.28 -0.39 -1.08 16 9 C -0.17 -1.49 10.11 -39.44 -0.40 -1.88 16 10 C 0.09 0.84 11.18 -17.55 -0.20 0.65 16 11 N -0.48 -5.57 10.36 -13.25 -0.14 -5.71 16 12 C 0.10 1.02 10.86 -17.55 -0.19 0.83 16 13 N -1.12 -17.06 4.89 -4.89 -0.02 -17.09 16 14 S 2.79 54.15 6.07 -107.50 -0.65 53.49 16 15 O -1.00 -20.18 16.66 -57.17 -0.95 -21.13 16 16 O -0.98 -22.78 16.63 -57.17 -0.95 -23.73 16 17 N -1.00 -20.01 3.06 -123.05 -0.38 -20.39 16 18 C 0.10 1.71 9.10 59.84 0.54 2.26 16 19 C 0.25 6.00 5.40 -5.19 -0.03 5.97 16 20 C -0.54 -13.76 9.38 -34.44 -0.32 -14.08 16 21 H 0.07 1.61 6.00 -52.49 -0.31 1.30 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 24 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H 0.08 1.22 5.15 -51.93 -0.27 0.95 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.79 7.63 -51.93 -0.40 0.39 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 36 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 37 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.15 1.06 8.06 -52.48 -0.42 0.63 16 40 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 41 H 0.41 5.77 8.86 -34.47 -0.31 5.46 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 44 H 0.05 0.73 6.85 -51.93 -0.36 0.37 16 45 H 0.03 0.89 8.11 -51.93 -0.42 0.47 16 46 H 0.05 1.43 6.90 -51.93 -0.36 1.07 16 47 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 395.51 15.07 5.96 5.96 Total: -1.00 -33.43 395.51 -10.69 -44.11 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -7.39 Total: 4.86 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -1.87 Total: -11.13 kcal Atomic # 7 Polarization: -67.99 SS G_CDS: 0.20 Total: -67.79 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -1.90 Total: -44.86 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 54.15 SS G_CDS: -0.65 Total: 53.49 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.43 -10.69 -44.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416540214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.407 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds