Wall clock time and date at job start Wed Apr 1 2020 00:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47716 * 2 1 4 4 C 1.53007 * 109.47124 * 120.00207 * 2 1 3 5 5 C 1.52997 * 109.47180 * 184.78848 * 4 2 1 6 6 C 1.52993 * 109.47203 * 184.39388 * 5 4 2 7 7 C 1.50706 * 109.47078 * 180.02562 * 6 5 4 8 8 C 1.38673 * 120.41424 * 269.72019 * 7 6 5 9 9 C 1.38630 * 118.41872 * 179.78744 * 8 7 6 10 10 C 1.38234 * 119.15704 * 0.50712 * 9 8 7 11 11 N 1.31847 * 120.76801 * 359.73148 * 10 9 8 12 12 C 1.31897 * 121.72348 * 359.97438 * 11 10 9 13 13 N 1.46499 * 109.46924 * 239.99559 * 2 1 3 14 14 S 1.65599 * 119.99658 * 96.95504 * 13 2 1 15 15 O 1.42103 * 106.40303 * 47.94716 * 14 13 2 16 16 O 1.42101 * 106.40554 * 180.86549 * 14 13 2 17 17 N 1.65601 * 107.21989 * 294.40569 * 14 13 2 18 18 C 1.46496 * 120.00088 * 86.39561 * 17 14 13 19 19 C 1.46506 * 119.99914 * 266.40155 * 17 14 13 20 20 C 1.50697 * 109.47183 * 94.36855 * 19 17 14 21 21 H 1.08000 * 119.99730 * 3.59188 * 20 19 17 22 22 C 1.37877 * 119.99792 * 183.58710 * 20 19 17 23 23 N 1.31507 * 120.00320 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99572 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47357 * 60.00230 * 24 22 20 26 26 H 1.48503 * 109.46625 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47276 * 299.99960 * 24 22 20 28 28 H 1.08991 * 109.47562 * 59.99773 * 1 2 3 29 29 H 1.09000 * 109.47417 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46918 * 299.99489 * 1 2 3 31 31 H 1.08998 * 109.46704 * 304.78841 * 4 2 1 32 32 H 1.09002 * 109.46759 * 64.79115 * 4 2 1 33 33 H 1.09007 * 109.46959 * 304.39323 * 5 4 2 34 34 H 1.09003 * 109.47138 * 64.39239 * 5 4 2 35 35 H 1.08997 * 109.47233 * 299.99849 * 6 5 4 36 36 H 1.08994 * 109.47341 * 60.00170 * 6 5 4 37 37 H 1.07993 * 120.79397 * 0.02562 * 8 7 6 38 38 H 1.08000 * 120.42090 * 180.22413 * 9 8 7 39 39 H 1.08004 * 119.61362 * 179.75453 * 10 9 8 40 40 H 1.07991 * 119.61277 * 179.97438 * 12 11 10 41 41 H 0.96998 * 120.00392 * 276.95741 * 13 2 1 42 42 H 1.09006 * 109.46837 * 90.00300 * 18 17 14 43 43 H 1.09003 * 109.47476 * 210.00126 * 18 17 14 44 44 H 1.08996 * 109.47187 * 330.00763 * 18 17 14 45 45 H 1.09006 * 109.46643 * 214.36957 * 19 17 14 46 46 H 1.09003 * 109.46987 * 334.36613 * 19 17 14 47 47 H 0.97002 * 120.00450 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5652 -0.6179 1.3109 6 6 4.0839 -1.4308 2.4988 7 6 5.5862 -1.3283 2.5599 8 6 6.3804 -2.2483 1.8920 9 6 7.7576 -2.1125 1.9726 10 6 8.2898 -1.0781 2.7194 11 7 7.5039 -0.2245 3.3456 12 6 6.1897 -0.3197 3.2863 13 7 2.0183 -0.6907 -1.1961 14 16 2.4579 0.1807 -2.5339 15 8 3.3003 1.2277 -2.0717 16 8 2.8609 -0.7654 -3.5146 17 7 1.0887 0.9058 -3.1184 18 6 0.6630 2.2031 -2.5874 19 6 0.3029 0.2499 -4.1666 20 6 -0.8073 -0.5504 -3.5357 21 1 -0.9525 -0.5223 -2.4659 22 6 -1.6377 -1.3182 -4.3243 23 7 -1.4607 -1.3526 -5.6269 24 14 -3.0144 -2.3095 -3.5422 25 1 -3.9415 -1.3935 -2.8306 26 1 -3.7568 -3.0440 -4.5980 27 1 -2.4388 -3.2797 -2.5764 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6083 -0.2594 2.1371 32 1 1.7484 -1.7708 1.2073 33 1 3.9935 -1.0092 0.3881 34 1 3.8540 0.4263 1.4314 35 1 3.6556 -1.0395 3.4215 36 1 3.7952 -2.4748 2.3783 37 1 5.9365 -3.0493 1.3195 38 1 8.4066 -2.8087 1.4622 39 1 9.3618 -0.9678 2.7905 40 1 5.5784 0.3980 3.8130 41 1 2.0840 -1.6584 -1.2046 42 1 1.1167 3.0022 -3.1737 43 1 -0.4227 2.2811 -2.6457 44 1 0.9783 2.2913 -1.5478 45 1 -0.1234 1.0049 -4.8273 46 1 0.9477 -0.4143 -4.7422 47 1 -2.0451 -1.8925 -6.1818 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416540214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:35 Heat of formation + Delta-G solvation = -86.395767 kcal Electronic energy + Delta-G solvation = -28251.607108 eV Core-core repulsion = 24366.392313 eV Total energy + Delta-G solvation = -3885.214795 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.07398 -38.64508 -38.08397 -37.18220 -36.87295 -35.55083 -34.44730 -33.06112 -32.02089 -30.50322 -29.62427 -27.38464 -26.71170 -24.47604 -24.18611 -23.89387 -22.09382 -21.84483 -20.45923 -18.87459 -18.53798 -18.12363 -17.95847 -17.38364 -17.25691 -16.71938 -16.16151 -16.03293 -15.37645 -15.21624 -15.05145 -14.96374 -14.69559 -14.41956 -14.16860 -13.99426 -13.96388 -13.92675 -13.51455 -13.33504 -13.18278 -13.04111 -12.97453 -12.89458 -12.77672 -12.63469 -12.41107 -12.35633 -12.31612 -11.96050 -11.90133 -11.64951 -11.51263 -11.44362 -10.70709 -10.55592 -10.40237 -10.32058 -9.82290 -9.72002 -8.13347 -6.26741 -0.22291 0.19841 0.36144 1.45248 1.47031 1.54333 2.04978 2.45367 2.67688 2.87683 3.18722 3.49000 3.56294 3.74298 3.92804 3.94876 4.07472 4.10547 4.13127 4.19414 4.27167 4.39052 4.51871 4.59089 4.69127 4.73027 4.77578 4.82922 4.90346 4.93506 4.97480 5.07250 5.08686 5.14398 5.16111 5.23081 5.29679 5.38837 5.47582 5.50707 5.57548 5.59604 5.81012 5.82905 5.91375 6.14519 6.27778 6.87320 7.04520 7.43575 8.95073 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016566 B = 0.002840 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.828876 B = 9855.694543 C =10292.171352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.144 3.856 3 H 0.084 0.916 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.069 4.069 7 C -0.136 4.136 8 C -0.089 4.089 9 C -0.173 4.173 10 C 0.073 3.927 11 N -0.514 5.514 12 C 0.082 3.918 13 N -1.109 6.109 14 S 2.800 3.200 15 O -1.009 7.009 16 O -1.024 7.024 17 N -1.001 6.001 18 C 0.096 3.904 19 C 0.259 3.741 20 C -0.540 4.540 21 H 0.086 0.914 22 C 0.005 3.995 23 N -0.934 5.934 24 Si 0.961 3.039 25 H -0.264 1.264 26 H -0.293 1.293 27 H -0.265 1.265 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.148 0.852 38 H 0.157 0.843 39 H 0.173 0.827 40 H 0.167 0.833 41 H 0.419 0.581 42 H 0.052 0.948 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.017 0.983 46 H 0.015 0.985 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.111 -0.141 20.029 22.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.037 3.963 3 H 0.102 0.898 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.107 4.107 7 C -0.138 4.138 8 C -0.115 4.115 9 C -0.192 4.192 10 C -0.083 4.083 11 N -0.223 5.223 12 C -0.074 4.074 13 N -0.871 5.871 14 S 2.808 3.192 15 O -0.992 6.992 16 O -1.008 7.008 17 N -0.843 5.843 18 C -0.049 4.049 19 C 0.135 3.865 20 C -0.579 4.579 21 H 0.104 0.896 22 C -0.193 4.193 23 N -0.574 5.574 24 Si 0.786 3.214 25 H -0.188 1.188 26 H -0.219 1.219 27 H -0.190 1.190 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.165 0.835 38 H 0.175 0.825 39 H 0.190 0.810 40 H 0.185 0.815 41 H 0.254 0.746 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.036 0.964 46 H 0.033 0.967 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.297 0.782 19.989 22.499 hybrid contribution -1.315 -1.627 -0.957 2.300 sum 8.982 -0.845 19.033 21.063 Atomic orbital electron populations 1.22444 0.94775 1.03119 1.03203 1.21019 0.94303 0.96311 0.84629 0.89773 1.21849 0.94636 1.01966 0.96622 1.21583 0.95901 1.00292 0.97662 1.20573 0.88470 1.01983 0.99677 1.21192 0.98412 0.96188 0.98021 1.21903 0.94117 0.98679 0.96838 1.22472 0.96254 1.00158 1.00340 1.23168 1.01049 0.90868 0.93243 1.67672 1.06550 1.27368 1.20723 1.23001 0.90763 0.96842 0.96792 1.55753 1.83190 1.19591 1.28589 1.01081 0.73151 0.72489 0.72524 1.93529 1.65362 1.57967 1.82388 1.93526 1.82636 1.64039 1.60611 1.57467 1.45089 1.30388 1.51317 1.21511 1.02010 0.83029 0.98398 1.18754 0.90274 0.91883 0.85595 1.21991 1.13814 1.26783 0.95291 0.89583 1.25882 1.00405 0.97923 0.95137 1.70079 1.40077 1.41659 1.05564 0.85571 0.79001 0.78889 0.77987 1.18824 1.21851 1.19015 0.92637 0.92345 0.89312 0.87958 0.90145 0.93471 0.92262 0.88695 0.89627 0.83456 0.82517 0.80989 0.81541 0.74564 0.92949 0.90449 0.90333 0.96446 0.96664 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.01 9.20 71.98 0.66 -3.35 16 2 C 0.14 3.24 2.74 44.99 0.12 3.36 16 3 H 0.08 1.93 6.77 -2.39 -0.02 1.91 16 4 C -0.11 -1.75 4.83 30.60 0.15 -1.60 16 5 C -0.12 -2.06 5.13 30.59 0.16 -1.90 16 6 C -0.07 -0.94 5.37 29.85 0.16 -0.78 16 7 C -0.14 -2.41 5.15 -19.77 -0.10 -2.51 16 8 C -0.09 -1.54 9.86 22.47 0.22 -1.32 16 9 C -0.17 -2.81 10.11 22.36 0.23 -2.58 16 10 C 0.07 1.35 11.18 84.69 0.95 2.29 16 11 N -0.51 -11.55 10.36 -195.84 -2.03 -13.58 16 12 C 0.08 1.62 10.86 84.67 0.92 2.54 16 13 N -1.11 -32.45 4.89 -169.39 -0.83 -33.27 16 14 S 2.80 108.86 6.07 -56.49 -0.34 108.51 16 15 O -1.01 -40.11 16.66 -128.00 -2.13 -42.24 16 16 O -1.02 -48.97 16.63 -128.00 -2.13 -51.09 16 17 N -1.00 -40.29 3.06 -543.21 -1.66 -41.95 16 18 C 0.10 3.06 9.10 127.77 1.16 4.23 16 19 C 0.26 13.00 5.40 85.63 0.46 13.47 16 20 C -0.54 -27.39 9.38 25.60 0.24 -27.15 16 21 H 0.09 3.96 6.00 -2.91 -0.02 3.94 16 22 C 0.01 0.29 5.46 84.66 0.46 0.75 16 23 N -0.93 -54.32 13.29 21.45 0.28 -54.03 16 24 Si 0.96 41.21 29.54 68.60 2.03 43.23 16 25 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 26 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 27 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 28 H 0.05 1.55 5.15 -2.39 -0.01 1.53 16 29 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.05 1.03 7.63 -2.38 -0.02 1.01 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 0.94 8.09 -2.39 -0.02 0.92 16 36 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 37 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 38 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.17 2.54 8.06 -2.92 -0.02 2.52 16 41 H 0.42 11.26 8.86 -96.75 -0.86 10.40 16 42 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.08 2.41 8.07 -2.39 -0.02 2.39 16 44 H 0.08 2.06 6.85 -2.39 -0.02 2.04 16 45 H 0.02 0.92 8.11 -2.38 -0.02 0.90 16 46 H 0.02 0.88 6.90 -2.39 -0.02 0.86 16 47 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -73.40 395.51 -0.91 -74.32 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.11 Total: 24.69 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 5.79 Total: -14.57 kcal Atomic # 7 Polarization: -138.60 SS G_CDS: -4.23 Total: -142.84 kcal Atomic # 8 Polarization: -89.08 SS G_CDS: -4.26 Total: -93.34 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Atomic # 16 Polarization: 108.86 SS G_CDS: -0.34 Total: 108.51 kcal Total: -73.40 -0.91 -74.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416540214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.081 kcal (2) G-P(sol) polarization free energy of solvation -73.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds