Wall clock time and date at job start Wed Apr 1 2020 01:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46651 * 2 1 4 4 C 1.46499 * 120.00321 * 274.99332 * 3 2 1 5 5 C 1.50700 * 109.47323 * 280.32893 * 4 3 2 6 6 H 1.07995 * 120.00183 * 4.91499 * 5 4 3 7 7 C 1.37881 * 119.99722 * 184.91798 * 5 4 3 8 8 N 1.31512 * 120.00138 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99732 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46949 * 89.99988 * 9 7 5 11 11 H 1.48501 * 109.47020 * 209.99741 * 9 7 5 12 12 H 1.48497 * 109.46989 * 330.00042 * 9 7 5 13 13 S 1.65599 * 119.99900 * 95.00272 * 3 2 1 14 14 O 1.42104 * 106.40065 * 330.11278 * 13 3 2 15 15 O 1.42100 * 106.40264 * 197.18848 * 13 3 2 16 16 N 1.65606 * 107.21938 * 83.65281 * 13 3 2 17 17 C 1.46500 * 120.00156 * 65.11359 * 16 13 3 18 18 C 1.52998 * 109.47134 * 165.89319 * 17 16 13 19 19 C 1.53003 * 109.47035 * 59.99972 * 18 17 16 20 20 C 1.53000 * 109.47115 * 300.00386 * 18 17 16 21 21 C 1.50696 * 109.47038 * 179.97438 * 18 17 16 22 22 C 1.38672 * 120.41718 * 179.72044 * 21 18 17 23 23 C 1.38634 * 118.41960 * 179.78559 * 22 21 18 24 24 C 1.38222 * 119.15779 * 0.51140 * 23 22 21 25 25 N 1.31851 * 120.76787 * 359.73245 * 24 23 22 26 26 C 1.31890 * 121.72425 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.47547 * 299.99883 * 1 2 3 28 28 H 1.08999 * 109.47355 * 60.00255 * 1 2 3 29 29 H 1.08997 * 109.47497 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46838 * 240.00047 * 2 1 3 31 31 H 1.08995 * 109.46644 * 119.99811 * 2 1 3 32 32 H 1.09005 * 109.46827 * 40.32309 * 4 3 2 33 33 H 1.08998 * 109.47331 * 160.32008 * 4 3 2 34 34 H 0.96998 * 120.00194 * 180.02562 * 8 7 5 35 35 H 0.97007 * 119.99585 * 245.11421 * 16 13 3 36 36 H 1.08997 * 109.47110 * 45.89504 * 17 16 13 37 37 H 1.09000 * 109.46923 * 285.89755 * 17 16 13 38 38 H 1.09000 * 109.47437 * 300.00123 * 19 18 17 39 39 H 1.08994 * 109.47151 * 179.97438 * 19 18 17 40 40 H 1.09011 * 109.46841 * 60.00083 * 19 18 17 41 41 H 1.09004 * 109.46693 * 180.02562 * 20 18 17 42 42 H 1.08997 * 109.46968 * 299.99717 * 20 18 17 43 43 H 1.09000 * 109.47205 * 59.99970 * 20 18 17 44 44 H 1.08004 * 120.79505 * 0.02626 * 22 21 18 45 45 H 1.08005 * 120.41787 * 180.22134 * 23 22 21 46 46 H 1.08003 * 119.61351 * 179.74614 * 24 23 22 47 47 H 1.08002 * 119.61624 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4352 1.6899 -1.9458 6 1 4.0379 0.8989 -1.5247 7 6 3.8338 2.3165 -3.1075 8 7 3.0996 3.2794 -3.6206 9 14 5.4170 1.7978 -3.9525 10 1 5.1259 0.7174 -4.9289 11 1 6.0034 2.9624 -4.6631 12 1 6.3802 1.3011 -2.9372 13 16 2.4121 2.1202 1.4287 14 8 1.5769 1.5425 2.4228 15 8 2.4515 3.5153 1.1614 16 7 3.9620 1.6717 1.8016 17 6 5.0721 2.0875 0.9408 18 6 6.3970 1.8580 1.6707 19 6 6.5424 0.3729 2.0090 20 6 6.4172 2.6793 2.9614 21 6 7.5390 2.2851 0.7850 22 6 8.8487 2.1794 1.2282 23 6 9.8675 2.5801 0.3775 24 6 9.5455 3.0782 -0.8710 25 7 8.2881 3.1690 -1.2572 26 6 7.2939 2.7920 -0.4769 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 1.3100 1.8815 -1.9097 33 1 2.1869 3.1801 -1.0652 34 1 3.3799 3.7199 -4.4380 35 1 4.1348 1.1337 2.5901 36 1 4.9686 3.1454 0.6999 37 1 5.0577 1.5023 0.0213 38 1 5.7165 0.0636 2.6494 39 1 7.4865 0.2094 2.5286 40 1 6.5281 -0.2123 1.0894 41 1 7.3613 2.5162 3.4812 42 1 6.3136 3.7373 2.7205 43 1 5.5912 2.3700 3.6019 44 1 9.0702 1.7905 2.2111 45 1 10.8993 2.5085 0.6883 46 1 10.3331 3.3963 -1.5380 47 1 6.2764 2.8811 -0.8280 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416632548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:38 Heat of formation + Delta-G solvation = -51.267433 kcal Electronic energy + Delta-G solvation = -29843.666534 eV Core-core repulsion = 25959.975018 eV Total energy + Delta-G solvation = -3883.691516 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.43729 -37.56721 -36.60663 -36.01421 -35.18552 -33.34922 -32.69771 -31.84814 -30.02792 -29.90069 -27.29623 -26.67745 -26.16279 -23.41931 -23.16396 -22.88091 -21.67845 -19.42390 -18.94601 -17.42819 -16.92959 -16.84425 -16.52064 -16.16362 -15.46374 -15.08883 -14.91323 -14.56510 -14.27705 -13.97795 -13.83350 -13.52841 -13.36729 -13.23404 -13.04897 -12.86738 -12.50408 -12.16502 -12.03917 -12.01584 -11.92742 -11.69064 -11.62161 -11.38390 -11.26895 -11.17977 -11.13874 -11.01766 -10.86868 -10.58434 -10.49694 -10.33060 -9.98277 -9.78350 -9.69539 -9.20743 -8.98702 -8.85291 -8.48216 -8.04767 -6.09992 -4.17706 1.21539 1.30827 1.37737 3.30574 3.41188 3.44017 3.54187 3.92903 4.16947 4.39121 4.46109 4.59937 4.79804 4.92616 5.00019 5.04381 5.11507 5.20054 5.24119 5.25982 5.41550 5.55768 5.58309 5.68073 5.75163 5.76174 5.81557 5.88449 5.93685 6.01752 6.04920 6.07858 6.14771 6.16251 6.31325 6.34795 6.39858 6.42051 6.68522 6.72192 6.83376 7.27930 7.39398 7.45921 7.69727 7.86428 8.16623 8.16939 8.86816 9.49005 10.97464 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010008 B = 0.005873 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.199672 B = 4766.574998 C = 6748.847137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.991 5.991 4 C 0.243 3.757 5 C -0.543 4.543 6 H 0.063 0.937 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.285 1.285 11 H -0.283 1.283 12 H -0.266 1.266 13 S 2.784 3.216 14 O -1.001 7.001 15 O -0.978 6.978 16 N -1.128 6.128 17 C 0.123 3.877 18 C -0.027 4.027 19 C -0.137 4.137 20 C -0.138 4.138 21 C -0.120 4.120 22 C -0.072 4.072 23 C -0.179 4.179 24 C 0.089 3.911 25 N -0.477 5.477 26 C 0.108 3.892 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.056 0.944 34 H 0.265 0.735 35 H 0.405 0.595 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.151 0.849 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.273 -5.603 11.096 15.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.833 5.833 4 C 0.121 3.879 5 C -0.582 4.582 6 H 0.081 0.919 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.712 3.288 10 H -0.212 1.212 11 H -0.208 1.208 12 H -0.190 1.190 13 S 2.792 3.208 14 O -0.985 6.985 15 O -0.961 6.961 16 N -0.888 5.888 17 C -0.003 4.003 18 C -0.029 4.029 19 C -0.195 4.195 20 C -0.195 4.195 21 C -0.123 4.123 22 C -0.098 4.098 23 C -0.199 4.199 24 C -0.068 4.068 25 N -0.185 5.185 26 C -0.049 4.049 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.238 0.762 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.148 0.852 45 H 0.148 0.852 46 H 0.168 0.832 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 8.473 -4.407 10.431 14.143 hybrid contribution 1.513 -1.113 0.221 1.891 sum 9.986 -5.519 10.653 15.609 Atomic orbital electron populations 1.22213 0.96997 1.01293 1.02491 1.20936 0.93626 0.82913 1.01936 1.57718 1.78567 1.22922 1.24089 1.19225 0.97235 0.92601 0.78868 1.21484 1.07717 1.19942 1.09064 0.91869 1.24915 0.96937 0.94628 0.96958 1.69920 1.38073 1.23297 1.20885 0.86725 0.83497 0.78355 0.80236 1.21160 1.20799 1.19018 1.01773 0.72600 0.73767 0.72667 1.93549 1.65470 1.79811 1.59711 1.93581 1.86500 1.30886 1.85147 1.56035 1.25113 1.70265 1.37376 1.21582 0.83803 1.01763 0.93136 1.19626 0.92238 0.96329 0.94714 1.21882 1.01566 0.93972 1.02045 1.21890 1.01665 1.00294 0.95679 1.20734 0.94793 1.00472 0.96289 1.21333 0.91963 0.97008 0.99489 1.22056 1.00048 1.01876 0.95897 1.22796 0.93903 0.95746 0.94376 1.67801 1.00190 1.15015 1.35445 1.23212 0.99545 0.92497 0.89627 0.92499 0.92095 0.92498 0.90163 0.92264 0.94882 0.92557 0.92516 0.76170 0.89935 0.89043 0.91930 0.92519 0.91905 0.92610 0.92015 0.91810 0.85196 0.85196 0.83193 0.81351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 10.24 37.16 0.38 -2.29 16 2 C 0.13 2.22 6.02 -4.04 -0.02 2.20 16 3 N -0.99 -19.57 2.84 -115.67 -0.33 -19.90 16 4 C 0.24 5.79 5.46 -5.19 -0.03 5.76 16 5 C -0.54 -13.38 8.46 -34.44 -0.29 -13.67 16 6 H 0.06 1.48 6.52 -52.49 -0.34 1.14 16 7 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 8 N -0.88 -24.82 13.29 55.43 0.74 -24.08 16 9 Si 0.88 20.70 29.54 -169.99 -5.02 15.68 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 S 2.78 53.12 6.07 -107.50 -0.65 52.47 16 14 O -1.00 -19.78 17.17 -57.17 -0.98 -20.77 16 15 O -0.98 -22.26 16.02 -57.17 -0.92 -23.18 16 16 N -1.13 -17.08 5.40 -10.62 -0.06 -17.14 16 17 C 0.12 1.95 3.77 -4.04 -0.02 1.93 16 18 C -0.03 -0.34 0.62 -155.66 -0.10 -0.43 16 19 C -0.14 -1.45 8.12 37.16 0.30 -1.15 16 20 C -0.14 -1.52 8.12 37.16 0.30 -1.22 16 21 C -0.12 -1.66 4.76 -104.49 -0.50 -2.15 16 22 C -0.07 -0.82 8.85 -39.27 -0.35 -1.16 16 23 C -0.18 -1.97 10.11 -39.44 -0.40 -2.37 16 24 C 0.09 1.19 11.18 -17.55 -0.20 0.99 16 25 N -0.48 -8.28 10.36 -13.25 -0.14 -8.42 16 26 C 0.11 1.84 10.15 -17.55 -0.18 1.66 16 27 H 0.06 0.93 7.97 -51.93 -0.41 0.51 16 28 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 31 H 0.06 0.87 7.78 -51.93 -0.40 0.46 16 32 H 0.03 0.83 8.10 -51.93 -0.42 0.41 16 33 H 0.06 1.50 6.77 -51.93 -0.35 1.15 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.40 4.94 6.45 -34.47 -0.22 4.72 16 36 H 0.08 1.47 7.16 -51.93 -0.37 1.10 16 37 H 0.09 1.60 5.26 -51.93 -0.27 1.33 16 38 H 0.06 0.59 6.61 -51.93 -0.34 0.25 16 39 H 0.06 0.50 7.47 -51.93 -0.39 0.11 16 40 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 41 H 0.05 0.50 7.44 -51.93 -0.39 0.12 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.66 7.17 -51.93 -0.37 0.28 16 44 H 0.13 1.12 7.26 -52.48 -0.38 0.74 16 45 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 46 H 0.15 1.57 8.06 -52.48 -0.42 1.15 16 47 H 0.17 3.20 5.91 -52.49 -0.31 2.89 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -32.02 386.27 -9.80 -41.82 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.07 Total: 7.86 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -1.19 Total: -10.17 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: 0.21 Total: -69.54 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -1.90 Total: -43.94 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 53.12 SS G_CDS: -0.65 Total: 52.47 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.02 -9.80 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416632548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.448 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds