Wall clock time and date at job start Wed Apr 1 2020 01:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46651 * 2 1 4 4 C 1.46499 * 120.00321 * 274.99332 * 3 2 1 5 5 C 1.50700 * 109.47323 * 280.32893 * 4 3 2 6 6 H 1.07995 * 120.00183 * 4.91499 * 5 4 3 7 7 C 1.37881 * 119.99722 * 184.91798 * 5 4 3 8 8 N 1.31512 * 120.00138 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99732 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46949 * 89.99988 * 9 7 5 11 11 H 1.48501 * 109.47020 * 209.99741 * 9 7 5 12 12 H 1.48497 * 109.46989 * 330.00042 * 9 7 5 13 13 S 1.65599 * 119.99900 * 95.00272 * 3 2 1 14 14 O 1.42104 * 106.40065 * 330.11278 * 13 3 2 15 15 O 1.42100 * 106.40264 * 197.18848 * 13 3 2 16 16 N 1.65606 * 107.21938 * 83.65281 * 13 3 2 17 17 C 1.46500 * 120.00156 * 65.11359 * 16 13 3 18 18 C 1.52998 * 109.47134 * 165.89319 * 17 16 13 19 19 C 1.53003 * 109.47035 * 59.99972 * 18 17 16 20 20 C 1.53000 * 109.47115 * 300.00386 * 18 17 16 21 21 C 1.50696 * 109.47038 * 179.97438 * 18 17 16 22 22 C 1.38672 * 120.41718 * 179.72044 * 21 18 17 23 23 C 1.38634 * 118.41960 * 179.78559 * 22 21 18 24 24 C 1.38222 * 119.15779 * 0.51140 * 23 22 21 25 25 N 1.31851 * 120.76787 * 359.73245 * 24 23 22 26 26 C 1.31890 * 121.72425 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.47547 * 299.99883 * 1 2 3 28 28 H 1.08999 * 109.47355 * 60.00255 * 1 2 3 29 29 H 1.08997 * 109.47497 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46838 * 240.00047 * 2 1 3 31 31 H 1.08995 * 109.46644 * 119.99811 * 2 1 3 32 32 H 1.09005 * 109.46827 * 40.32309 * 4 3 2 33 33 H 1.08998 * 109.47331 * 160.32008 * 4 3 2 34 34 H 0.96998 * 120.00194 * 180.02562 * 8 7 5 35 35 H 0.97007 * 119.99585 * 245.11421 * 16 13 3 36 36 H 1.08997 * 109.47110 * 45.89504 * 17 16 13 37 37 H 1.09000 * 109.46923 * 285.89755 * 17 16 13 38 38 H 1.09000 * 109.47437 * 300.00123 * 19 18 17 39 39 H 1.08994 * 109.47151 * 179.97438 * 19 18 17 40 40 H 1.09011 * 109.46841 * 60.00083 * 19 18 17 41 41 H 1.09004 * 109.46693 * 180.02562 * 20 18 17 42 42 H 1.08997 * 109.46968 * 299.99717 * 20 18 17 43 43 H 1.09000 * 109.47205 * 59.99970 * 20 18 17 44 44 H 1.08004 * 120.79505 * 0.02626 * 22 21 18 45 45 H 1.08005 * 120.41787 * 180.22134 * 23 22 21 46 46 H 1.08003 * 119.61351 * 179.74614 * 24 23 22 47 47 H 1.08002 * 119.61624 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4352 1.6899 -1.9458 6 1 4.0379 0.8989 -1.5247 7 6 3.8338 2.3165 -3.1075 8 7 3.0996 3.2794 -3.6206 9 14 5.4170 1.7978 -3.9525 10 1 5.1259 0.7174 -4.9289 11 1 6.0034 2.9624 -4.6631 12 1 6.3802 1.3011 -2.9372 13 16 2.4121 2.1202 1.4287 14 8 1.5769 1.5425 2.4228 15 8 2.4515 3.5153 1.1614 16 7 3.9620 1.6717 1.8016 17 6 5.0721 2.0875 0.9408 18 6 6.3970 1.8580 1.6707 19 6 6.5424 0.3729 2.0090 20 6 6.4172 2.6793 2.9614 21 6 7.5390 2.2851 0.7850 22 6 8.8487 2.1794 1.2282 23 6 9.8675 2.5801 0.3775 24 6 9.5455 3.0782 -0.8710 25 7 8.2881 3.1690 -1.2572 26 6 7.2939 2.7920 -0.4769 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 1.3100 1.8815 -1.9097 33 1 2.1869 3.1801 -1.0652 34 1 3.3799 3.7199 -4.4380 35 1 4.1348 1.1337 2.5901 36 1 4.9686 3.1454 0.6999 37 1 5.0577 1.5023 0.0213 38 1 5.7165 0.0636 2.6494 39 1 7.4865 0.2094 2.5286 40 1 6.5281 -0.2123 1.0894 41 1 7.3613 2.5162 3.4812 42 1 6.3136 3.7373 2.7205 43 1 5.5912 2.3700 3.6019 44 1 9.0702 1.7905 2.2111 45 1 10.8993 2.5085 0.6883 46 1 10.3331 3.3963 -1.5380 47 1 6.2764 2.8811 -0.8280 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416632548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:37 Heat of formation + Delta-G solvation = -73.988141 kcal Electronic energy + Delta-G solvation = -29844.651778 eV Core-core repulsion = 25959.975018 eV Total energy + Delta-G solvation = -3884.676760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.46646 -38.69551 -38.23398 -37.65273 -36.86824 -34.69177 -34.54781 -32.86514 -31.49604 -31.01446 -28.50921 -28.12803 -27.36897 -24.94289 -24.44246 -23.96031 -23.25222 -20.48938 -20.41759 -18.86224 -18.55346 -18.28921 -18.05410 -17.47519 -17.03154 -16.49690 -16.11419 -15.87981 -15.68360 -15.29552 -14.99704 -14.75505 -14.69722 -14.59570 -14.29275 -14.02964 -13.75582 -13.64724 -13.48594 -13.36310 -13.19233 -13.15447 -12.98317 -12.96047 -12.79733 -12.71445 -12.66478 -12.27809 -12.15966 -12.07886 -12.02288 -11.78963 -11.57512 -11.55222 -10.69154 -10.56553 -10.38058 -10.25170 -9.87434 -9.76573 -8.16879 -6.28082 -0.26786 0.20636 0.41125 1.37457 1.48536 1.51567 2.01449 2.40833 2.63401 2.89647 3.17227 3.41697 3.49391 3.64594 3.78785 3.97865 4.02946 4.09419 4.11091 4.20683 4.33559 4.42707 4.47615 4.57520 4.66925 4.71627 4.77457 4.85917 4.87278 4.89361 4.98258 5.01910 5.07147 5.11315 5.18710 5.19344 5.31203 5.34446 5.40558 5.43043 5.44945 5.55223 5.79288 5.84650 5.93256 6.13041 6.25771 6.84096 7.11849 7.41727 8.91201 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010008 B = 0.005873 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.199672 B = 4766.574998 C = 6748.847137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 N -0.995 5.995 4 C 0.258 3.742 5 C -0.528 4.528 6 H 0.076 0.924 7 C 0.024 3.976 8 N -0.924 5.924 9 Si 0.940 3.060 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.257 1.257 13 S 2.797 3.203 14 O -1.003 7.003 15 O -1.019 7.019 16 N -1.107 6.107 17 C 0.127 3.873 18 C -0.021 4.021 19 C -0.135 4.135 20 C -0.138 4.138 21 C -0.120 4.120 22 C -0.065 4.065 23 C -0.160 4.160 24 C 0.072 3.928 25 N -0.523 5.523 26 C 0.069 3.931 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.017 0.983 33 H 0.021 0.979 34 H 0.263 0.737 35 H 0.423 0.577 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.049 0.951 41 H 0.087 0.913 42 H 0.042 0.958 43 H 0.071 0.929 44 H 0.171 0.829 45 H 0.174 0.826 46 H 0.173 0.827 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.092 -8.215 13.868 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.836 5.836 4 C 0.135 3.865 5 C -0.568 4.568 6 H 0.094 0.906 7 C -0.176 4.176 8 N -0.564 5.564 9 Si 0.767 3.233 10 H -0.205 1.205 11 H -0.223 1.223 12 H -0.181 1.181 13 S 2.806 3.194 14 O -0.987 6.987 15 O -1.003 7.003 16 N -0.872 5.872 17 C 0.001 3.999 18 C -0.023 4.023 19 C -0.193 4.193 20 C -0.195 4.195 21 C -0.123 4.123 22 C -0.091 4.091 23 C -0.180 4.180 24 C -0.085 4.085 25 N -0.232 5.232 26 C -0.087 4.087 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.035 0.965 33 H 0.039 0.961 34 H 0.072 0.928 35 H 0.260 0.740 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.061 0.939 43 H 0.090 0.910 44 H 0.188 0.812 45 H 0.191 0.809 46 H 0.190 0.810 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.270 -7.066 13.239 18.767 hybrid contribution 0.681 -0.296 -0.571 0.937 sum 11.951 -7.362 12.668 18.908 Atomic orbital electron populations 1.22200 0.96091 1.03156 1.01326 1.21243 0.94519 0.81189 1.03355 1.57610 1.79318 1.24135 1.22584 1.18738 0.96379 0.91142 0.80274 1.21749 1.07552 1.19216 1.08254 0.90578 1.25567 0.99286 0.94805 0.97961 1.70038 1.39857 1.24977 1.21559 0.85832 0.80723 0.77446 0.79312 1.20508 1.22303 1.18063 1.01184 0.73205 0.72811 0.72243 1.93537 1.66191 1.79561 1.59438 1.93534 1.87287 1.33797 1.85658 1.55562 1.23523 1.70194 1.37871 1.21454 0.85905 0.99450 0.93120 1.19625 0.89557 0.98405 0.94717 1.21906 1.03798 0.91549 1.02005 1.21922 1.03816 0.98810 0.94945 1.20803 0.96551 0.99929 0.94986 1.21770 0.90445 0.95860 1.01030 1.22505 1.02117 0.99041 0.94301 1.23300 0.92891 0.96055 0.96254 1.67650 1.01884 1.16641 1.37040 1.22835 0.98263 0.95830 0.91752 0.93331 0.93577 0.89129 0.90096 0.89411 0.96485 0.96057 0.92810 0.73987 0.93071 0.91088 0.90558 0.89564 0.93229 0.89397 0.93902 0.90959 0.81166 0.80874 0.81004 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.10 10.24 71.98 0.74 -4.36 16 2 C 0.12 3.97 6.02 86.38 0.52 4.49 16 3 N -1.00 -40.04 2.84 -519.86 -1.48 -41.52 16 4 C 0.26 12.95 5.46 85.63 0.47 13.42 16 5 C -0.53 -27.02 8.46 25.60 0.22 -26.80 16 6 H 0.08 3.63 6.52 -2.91 -0.02 3.61 16 7 C 0.02 1.30 5.46 84.66 0.46 1.77 16 8 N -0.92 -54.62 13.29 21.45 0.28 -54.33 16 9 Si 0.94 44.44 29.54 68.60 2.03 46.46 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 12 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 13 S 2.80 107.99 6.07 -56.49 -0.34 107.65 16 14 O -1.00 -38.63 17.17 -128.00 -2.20 -40.83 16 15 O -1.02 -48.68 16.02 -128.00 -2.05 -50.73 16 16 N -1.11 -32.85 5.40 -187.50 -1.01 -33.86 16 17 C 0.13 4.10 3.77 86.38 0.33 4.43 16 18 C -0.02 -0.48 0.62 -52.93 -0.03 -0.52 16 19 C -0.14 -2.37 8.12 71.98 0.58 -1.78 16 20 C -0.14 -2.66 8.12 71.98 0.58 -2.08 16 21 C -0.12 -3.14 4.76 -19.78 -0.09 -3.23 16 22 C -0.07 -1.21 8.85 22.47 0.20 -1.01 16 23 C -0.16 -2.87 10.11 22.36 0.23 -2.64 16 24 C 0.07 1.81 11.18 84.69 0.95 2.75 16 25 N -0.52 -18.51 10.36 -195.84 -2.03 -20.54 16 26 C 0.07 2.43 10.15 84.67 0.86 3.29 16 27 H 0.05 1.53 7.97 -2.39 -0.02 1.52 16 28 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 29 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.08 2.63 8.08 -2.39 -0.02 2.61 16 31 H 0.09 2.36 7.78 -2.39 -0.02 2.34 16 32 H 0.02 0.90 8.10 -2.38 -0.02 0.88 16 33 H 0.02 1.22 6.77 -2.39 -0.02 1.21 16 34 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.42 9.34 6.45 -96.74 -0.62 8.71 16 36 H 0.05 1.97 7.16 -2.39 -0.02 1.95 16 37 H 0.07 2.59 5.26 -2.39 -0.01 2.57 16 38 H 0.08 1.12 6.61 -2.39 -0.02 1.10 16 39 H 0.09 1.03 7.47 -2.39 -0.02 1.02 16 40 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.09 1.15 7.44 -2.39 -0.02 1.13 16 42 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 1.26 7.17 -2.39 -0.02 1.25 16 44 H 0.17 1.79 7.26 -2.91 -0.02 1.76 16 45 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 46 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 47 H 0.13 5.45 5.91 -2.91 -0.02 5.43 16 Total: -1.00 -74.81 386.27 -0.44 -75.25 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.35 Total: 24.72 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 6.00 Total: -12.27 kcal Atomic # 7 Polarization: -146.02 SS G_CDS: -4.23 Total: -150.25 kcal Atomic # 8 Polarization: -87.32 SS G_CDS: -4.25 Total: -91.56 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 107.99 SS G_CDS: -0.34 Total: 107.65 kcal Total: -74.81 -0.44 -75.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416632548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.266 kcal (2) G-P(sol) polarization free energy of solvation -74.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds