Wall clock time and date at job start Wed Apr 1 2020 00:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.53002 * 109.47408 * 164.99913 * 18 17 14 20 20 C 1.53003 * 109.47020 * 299.99783 * 19 18 17 21 21 C 1.52997 * 109.47087 * 59.99903 * 19 18 17 22 22 C 1.50702 * 109.47115 * 179.97438 * 19 18 17 23 23 C 1.38675 * 120.41828 * 179.71806 * 22 19 18 24 24 C 1.38618 * 118.42135 * 179.78550 * 23 22 19 25 25 C 1.38230 * 119.16252 * 0.51498 * 24 23 22 26 26 N 1.31855 * 120.76073 * 359.72695 * 25 24 23 27 27 C 1.31885 * 121.72612 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 30 30 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 33 33 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 34 34 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 35 35 H 0.97000 * 120.00897 * 245.00185 * 17 14 12 36 36 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 37 37 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 38 38 H 1.08997 * 109.46650 * 59.99990 * 20 19 18 39 39 H 1.08997 * 109.47001 * 180.02562 * 20 19 18 40 40 H 1.08997 * 109.46985 * 300.00317 * 20 19 18 41 41 H 1.09003 * 109.47750 * 60.00010 * 21 19 18 42 42 H 1.08997 * 109.47072 * 179.97438 * 21 19 18 43 43 H 1.09005 * 109.47102 * 300.00136 * 21 19 18 44 44 H 1.08010 * 120.78863 * 0.02562 * 23 22 19 45 45 H 1.08002 * 120.42239 * 180.21723 * 24 23 22 46 46 H 1.07999 * 119.62305 * 179.75027 * 25 24 23 47 47 H 1.08002 * 119.61783 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6085 0.8078 5.4378 20 6 1.7766 1.3994 6.2294 21 6 -0.2562 1.9406 4.8812 22 6 -0.2249 -0.0606 6.3447 23 6 -0.8242 0.4758 7.4743 24 6 -1.5856 -0.3594 8.2769 25 6 -1.7123 -1.6922 7.9330 26 7 -1.1239 -2.1691 6.8537 27 6 -0.3963 -1.4028 6.0645 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.7088 1.1611 -3.4845 32 1 2.4158 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9847 35 1 1.9052 1.7752 3.4681 36 1 0.3187 -0.4565 3.7178 37 1 1.7669 -0.8422 4.6782 38 1 2.3790 2.0275 5.5732 39 1 1.3902 1.9994 7.0533 40 1 2.3926 0.5923 6.6259 41 1 -1.0883 1.5192 4.3172 42 1 -0.6429 2.5407 5.7048 43 1 0.3463 2.5688 4.2250 44 1 -0.7039 1.5205 7.7207 45 1 -2.0696 0.0252 9.1625 46 1 -2.3004 -2.3505 8.5553 47 1 0.0709 -1.8292 5.1892 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416637359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:19 Heat of formation + Delta-G solvation = -44.546142 kcal Electronic energy + Delta-G solvation = -29040.005252 eV Core-core repulsion = 25156.605193 eV Total energy + Delta-G solvation = -3883.400059 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.77421 -37.86543 -36.63819 -36.15726 -35.22741 -33.60876 -32.57609 -32.16865 -30.31140 -29.09739 -27.48614 -26.56078 -25.58188 -25.12614 -23.74680 -23.22269 -20.81016 -19.70273 -18.98295 -17.63942 -17.20021 -16.91650 -16.69886 -16.20984 -15.53516 -15.32769 -14.95266 -14.88281 -14.33084 -14.25239 -13.94536 -13.66322 -13.46499 -13.37593 -13.14926 -12.86159 -12.69272 -12.44697 -12.17244 -12.01368 -11.75752 -11.68697 -11.50558 -11.44021 -11.36404 -11.34269 -11.23386 -10.96997 -10.85105 -10.80189 -10.46725 -10.26332 -10.03649 -9.99743 -9.59907 -9.35248 -9.23032 -9.19514 -8.44897 -7.97832 -6.07045 -4.13288 0.87183 1.04491 1.20216 3.29865 3.36231 3.38960 3.47784 3.57593 4.08838 4.14992 4.30021 4.40863 4.44342 4.65810 4.70650 4.72370 4.86559 4.95145 5.02079 5.24650 5.27846 5.33614 5.40721 5.50500 5.51372 5.55912 5.65334 5.68011 5.70432 5.83204 5.89799 6.04034 6.07372 6.10881 6.13996 6.37169 6.45878 6.62940 6.76769 6.79500 7.01418 7.12577 7.48315 7.64095 7.76630 7.79492 8.04565 8.28225 8.89084 9.52554 10.98660 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017933 B = 0.003154 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.963772 B = 8876.177467 C = 9274.651803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.269 3.731 3 H 0.059 0.941 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.989 5.989 13 C 0.108 3.892 14 S 2.779 3.221 15 O -0.996 6.996 16 O -0.974 6.974 17 N -1.131 6.131 18 C 0.126 3.874 19 C -0.026 4.026 20 C -0.140 4.140 21 C -0.140 4.140 22 C -0.116 4.116 23 C -0.069 4.069 24 C -0.172 4.172 25 C 0.090 3.910 26 N -0.480 5.480 27 C 0.098 3.902 28 H 0.033 0.967 29 H 0.011 0.989 30 H 0.092 0.908 31 H 0.263 0.737 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.411 0.589 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.153 0.847 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.259 0.869 20.801 21.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.212 1.212 12 N -0.832 5.832 13 C -0.038 4.038 14 S 2.788 3.212 15 O -0.979 6.979 16 O -0.958 6.958 17 N -0.891 5.891 18 C -0.001 4.001 19 C -0.028 4.028 20 C -0.197 4.197 21 C -0.198 4.198 22 C -0.119 4.119 23 C -0.095 4.095 24 C -0.192 4.192 25 C -0.067 4.067 26 N -0.187 5.187 27 C -0.059 4.059 28 H 0.052 0.948 29 H 0.030 0.970 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.245 0.755 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.171 0.829 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.466 -0.066 20.437 21.156 hybrid contribution -0.172 0.854 -0.616 1.067 sum -5.637 0.787 19.821 20.622 Atomic orbital electron populations 1.22115 0.98285 0.99702 1.00606 1.18718 0.91243 0.92961 0.80480 0.92374 1.21344 1.31511 1.13003 0.90061 0.91946 1.24907 0.94955 0.95028 0.99000 1.69858 1.36566 1.22782 1.23747 0.86502 0.78650 0.79996 0.82288 1.20574 1.19858 1.21206 1.57679 1.70017 1.19767 1.35779 1.21170 1.01838 0.82176 0.98642 1.01958 0.73646 0.73203 0.72426 1.93539 1.69090 1.60716 1.74539 1.93618 1.74322 1.56024 1.71838 1.56260 1.62491 1.17337 1.52965 1.21365 0.95074 0.92981 0.90651 1.19614 0.94805 0.94901 0.93468 1.21901 0.96975 1.01150 0.99678 1.21908 0.99711 0.97090 1.01050 1.20756 0.99055 0.95565 0.96523 1.21397 0.94656 1.00266 0.93230 1.22124 1.00586 0.95296 1.01167 1.22785 0.96590 0.93635 0.93703 1.67737 1.07485 1.39105 1.04421 1.22891 0.94747 0.90011 0.98242 0.94775 0.97033 0.88924 0.92732 0.93199 0.93452 0.90900 0.75461 0.91223 0.90224 0.91457 0.92331 0.92040 0.91808 0.92261 0.91479 0.84909 0.84893 0.82921 0.82372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.95 37.16 0.33 -2.93 16 2 C 0.27 6.45 2.62 -69.09 -0.18 6.27 16 3 H 0.06 1.55 6.91 -51.92 -0.36 1.19 16 4 C -0.52 -13.91 8.37 -34.44 -0.29 -14.20 16 5 H 0.06 1.67 7.65 -52.49 -0.40 1.27 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 8 Si 0.90 21.13 29.54 -169.99 -5.02 16.10 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.99 -19.94 3.12 -115.86 -0.36 -20.30 16 13 C 0.11 1.88 9.53 59.85 0.57 2.45 16 14 S 2.78 52.59 6.09 -107.50 -0.66 51.93 16 15 O -1.00 -20.09 16.68 -57.17 -0.95 -21.04 16 16 O -0.97 -22.20 16.70 -57.17 -0.95 -23.15 16 17 N -1.13 -15.51 5.39 -10.61 -0.06 -15.57 16 18 C 0.13 1.46 3.80 -4.04 -0.02 1.44 16 19 C -0.03 -0.24 0.63 -155.66 -0.10 -0.34 16 20 C -0.14 -1.22 8.12 37.16 0.30 -0.92 16 21 C -0.14 -1.22 8.12 37.16 0.30 -0.92 16 22 C -0.12 -1.10 4.76 -104.48 -0.50 -1.60 16 23 C -0.07 -0.55 8.85 -39.28 -0.35 -0.90 16 24 C -0.17 -1.28 10.11 -39.44 -0.40 -1.68 16 25 C 0.09 0.80 11.18 -17.54 -0.20 0.60 16 26 N -0.48 -5.50 10.36 -13.25 -0.14 -5.64 16 27 C 0.10 1.06 10.15 -17.55 -0.18 0.88 16 28 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.67 7.79 -51.93 -0.40 0.27 16 34 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 35 H 0.41 4.93 6.47 -34.47 -0.22 4.71 16 36 H 0.07 0.78 7.53 -51.93 -0.39 0.39 16 37 H 0.08 0.93 7.14 -51.93 -0.37 0.56 16 38 H 0.07 0.59 7.19 -51.93 -0.37 0.22 16 39 H 0.06 0.41 7.44 -51.93 -0.39 0.02 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.42 7.47 -51.93 -0.39 0.04 16 43 H 0.07 0.59 6.60 -51.93 -0.34 0.25 16 44 H 0.13 0.80 7.26 -52.48 -0.38 0.41 16 45 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 46 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.16 1.61 5.91 -52.49 -0.31 1.30 16 LS Contribution 382.56 15.07 5.77 5.77 Total: -1.00 -33.21 382.56 -9.53 -42.75 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.00 Total: 3.38 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.79 Total: -10.22 kcal Atomic # 7 Polarization: -65.58 SS G_CDS: 0.07 Total: -65.51 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -1.91 Total: -44.20 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 52.59 SS G_CDS: -0.66 Total: 51.93 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.21 -9.53 -42.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416637359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.798 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds