Wall clock time and date at job start Wed Apr 1 2020 00:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.53002 * 109.47408 * 164.99913 * 18 17 14 20 20 C 1.53003 * 109.47020 * 299.99783 * 19 18 17 21 21 C 1.52997 * 109.47087 * 59.99903 * 19 18 17 22 22 C 1.50702 * 109.47115 * 179.97438 * 19 18 17 23 23 C 1.38675 * 120.41828 * 179.71806 * 22 19 18 24 24 C 1.38618 * 118.42135 * 179.78550 * 23 22 19 25 25 C 1.38230 * 119.16252 * 0.51498 * 24 23 22 26 26 N 1.31855 * 120.76073 * 359.72695 * 25 24 23 27 27 C 1.31885 * 121.72612 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 30 30 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 33 33 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 34 34 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 35 35 H 0.97000 * 120.00897 * 245.00185 * 17 14 12 36 36 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 37 37 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 38 38 H 1.08997 * 109.46650 * 59.99990 * 20 19 18 39 39 H 1.08997 * 109.47001 * 180.02562 * 20 19 18 40 40 H 1.08997 * 109.46985 * 300.00317 * 20 19 18 41 41 H 1.09003 * 109.47750 * 60.00010 * 21 19 18 42 42 H 1.08997 * 109.47072 * 179.97438 * 21 19 18 43 43 H 1.09005 * 109.47102 * 300.00136 * 21 19 18 44 44 H 1.08010 * 120.78863 * 0.02562 * 23 22 19 45 45 H 1.08002 * 120.42239 * 180.21723 * 24 23 22 46 46 H 1.07999 * 119.62305 * 179.75027 * 25 24 23 47 47 H 1.08002 * 119.61783 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6085 0.8078 5.4378 20 6 1.7766 1.3994 6.2294 21 6 -0.2562 1.9406 4.8812 22 6 -0.2249 -0.0606 6.3447 23 6 -0.8242 0.4758 7.4743 24 6 -1.5856 -0.3594 8.2769 25 6 -1.7123 -1.6922 7.9330 26 7 -1.1239 -2.1691 6.8537 27 6 -0.3963 -1.4028 6.0645 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.7088 1.1611 -3.4845 32 1 2.4158 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9847 35 1 1.9052 1.7752 3.4681 36 1 0.3187 -0.4565 3.7178 37 1 1.7669 -0.8422 4.6782 38 1 2.3790 2.0275 5.5732 39 1 1.3902 1.9994 7.0533 40 1 2.3926 0.5923 6.6259 41 1 -1.0883 1.5192 4.3172 42 1 -0.6429 2.5407 5.7048 43 1 0.3463 2.5688 4.2250 44 1 -0.7039 1.5205 7.7207 45 1 -2.0696 0.0252 9.1625 46 1 -2.3004 -2.3505 8.5553 47 1 0.0709 -1.8292 5.1892 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416637359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:18 Heat of formation + Delta-G solvation = -67.793489 kcal Electronic energy + Delta-G solvation = -29041.013332 eV Core-core repulsion = 25156.605193 eV Total energy + Delta-G solvation = -3884.408139 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46016 -38.72074 -38.25856 -37.87018 -36.87870 -34.61234 -34.49246 -32.86198 -31.01653 -30.89574 -28.15896 -27.47615 -27.26939 -26.95626 -24.43345 -23.94566 -22.59469 -20.48268 -20.38255 -18.96357 -18.56102 -18.21464 -18.03915 -17.45017 -17.02445 -16.47258 -16.09132 -15.79272 -15.72358 -15.16510 -14.98857 -14.82850 -14.69707 -14.51145 -14.35054 -13.99912 -13.73885 -13.51320 -13.38779 -13.19248 -13.17994 -13.12917 -12.99849 -12.96490 -12.83050 -12.80696 -12.58792 -12.23927 -12.14379 -12.11648 -12.08917 -11.88995 -11.66406 -11.13895 -10.67944 -10.51235 -10.44711 -10.27707 -9.86197 -9.66627 -8.11371 -6.24376 -0.31492 0.21970 0.41183 1.42122 1.44230 1.53108 2.04138 2.43663 2.64436 2.91010 3.17067 3.37364 3.49120 3.57870 3.77106 3.94010 4.06623 4.09920 4.11919 4.16599 4.32344 4.46268 4.64087 4.65614 4.68441 4.77641 4.82186 4.83637 4.87353 4.96558 4.98570 5.01377 5.06247 5.09878 5.17214 5.19778 5.21447 5.36417 5.39340 5.40528 5.62483 5.71762 5.83848 5.89081 6.06207 6.20638 6.31958 6.83176 7.09528 7.44456 8.92666 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017933 B = 0.003154 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.963772 B = 8876.177467 C = 9274.651803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.274 3.726 3 H 0.026 0.974 4 C -0.539 4.539 5 H 0.055 0.945 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.953 3.047 9 H -0.282 1.282 10 H -0.268 1.268 11 H -0.279 1.279 12 N -0.996 5.996 13 C 0.102 3.898 14 S 2.796 3.204 15 O -1.009 7.009 16 O -1.017 7.017 17 N -1.113 6.113 18 C 0.117 3.883 19 C -0.016 4.016 20 C -0.142 4.142 21 C -0.141 4.141 22 C -0.120 4.120 23 C -0.070 4.070 24 C -0.164 4.164 25 C 0.076 3.924 26 N -0.512 5.512 27 C 0.074 3.926 28 H 0.042 0.958 29 H 0.037 0.963 30 H 0.065 0.935 31 H 0.264 0.736 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.421 0.579 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.158 0.842 45 H 0.165 0.835 46 H 0.174 0.826 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.416 1.090 22.819 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.170 3.830 3 H 0.044 0.956 4 C -0.579 4.579 5 H 0.073 0.927 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.779 3.221 9 H -0.209 1.209 10 H -0.192 1.192 11 H -0.204 1.204 12 N -0.838 5.838 13 C -0.044 4.044 14 S 2.805 3.195 15 O -0.992 6.992 16 O -1.001 7.001 17 N -0.877 5.877 18 C -0.009 4.009 19 C -0.018 4.018 20 C -0.199 4.199 21 C -0.198 4.198 22 C -0.123 4.123 23 C -0.096 4.096 24 C -0.183 4.183 25 C -0.081 4.081 26 N -0.221 5.221 27 C -0.082 4.082 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.258 0.742 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.176 0.824 45 H 0.183 0.817 46 H 0.191 0.809 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.619 0.142 22.458 23.414 hybrid contribution 0.161 0.778 -1.102 1.359 sum -6.458 0.920 21.356 22.330 Atomic orbital electron populations 1.21902 0.96776 1.00177 1.00536 1.18384 0.92244 0.91317 0.81060 0.95588 1.21674 1.31583 1.13021 0.91606 0.92690 1.25610 0.95227 0.95739 1.01561 1.69969 1.37235 1.23680 1.24302 0.85638 0.77968 0.79201 0.79319 1.20866 1.19213 1.20387 1.57557 1.70000 1.20947 1.35311 1.21359 1.01751 0.80513 1.00760 1.01209 0.73600 0.72347 0.72326 1.93517 1.69848 1.61273 1.74576 1.93555 1.75855 1.57381 1.73290 1.55755 1.62083 1.18051 1.51834 1.21619 0.94842 0.93150 0.91243 1.19519 0.95095 0.94679 0.92549 1.21936 0.96609 1.01083 1.00265 1.21931 0.99244 0.96928 1.01722 1.20734 0.99402 0.94963 0.97211 1.21725 0.93927 1.01556 0.92412 1.22472 0.99645 0.94497 1.01733 1.23254 0.96504 0.95000 0.93296 1.67694 1.08555 1.40166 1.05672 1.22926 0.95729 0.90872 0.98675 0.93938 0.94401 0.91586 0.92654 0.94135 0.90285 0.90299 0.74179 0.90713 0.90404 0.91783 0.90069 0.92898 0.92654 0.90121 0.91719 0.82432 0.81719 0.80904 0.82906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.91 8.95 71.98 0.64 -5.27 16 2 C 0.27 13.34 2.62 44.24 0.12 13.45 16 3 H 0.03 1.44 6.91 -2.38 -0.02 1.42 16 4 C -0.54 -29.29 8.37 25.60 0.21 -29.07 16 5 H 0.05 2.99 7.65 -2.91 -0.02 2.96 16 6 C 0.02 1.01 5.30 84.66 0.45 1.46 16 7 N -0.91 -51.12 11.32 21.45 0.24 -50.88 16 8 Si 0.95 43.51 29.54 68.60 2.03 45.54 16 9 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 12 N -1.00 -40.23 3.12 -520.46 -1.62 -41.86 16 13 C 0.10 3.48 9.53 127.77 1.22 4.70 16 14 S 2.80 106.25 6.09 -56.49 -0.34 105.91 16 15 O -1.01 -40.52 16.68 -128.00 -2.14 -42.65 16 16 O -1.02 -47.44 16.70 -128.00 -2.14 -49.58 16 17 N -1.11 -29.74 5.39 -187.47 -1.01 -30.75 16 18 C 0.12 2.58 3.80 86.38 0.33 2.91 16 19 C -0.02 -0.27 0.63 -52.93 -0.03 -0.30 16 20 C -0.14 -2.16 8.12 71.98 0.58 -1.57 16 21 C -0.14 -2.13 8.12 71.98 0.58 -1.54 16 22 C -0.12 -2.05 4.76 -19.77 -0.09 -2.14 16 23 C -0.07 -0.89 8.85 22.46 0.20 -0.70 16 24 C -0.16 -1.91 10.11 22.36 0.23 -1.68 16 25 C 0.08 1.21 11.18 84.69 0.95 2.15 16 26 N -0.51 -11.32 10.36 -195.84 -2.03 -13.35 16 27 C 0.07 1.55 10.15 84.67 0.86 2.41 16 28 H 0.04 1.75 6.66 -2.39 -0.02 1.73 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 3.29 6.07 -2.39 -0.01 3.28 16 31 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 2.16 7.79 -2.38 -0.02 2.14 16 34 H 0.08 2.58 6.43 -2.39 -0.02 2.56 16 35 H 0.42 9.75 6.47 -96.74 -0.63 9.13 16 36 H 0.07 1.59 7.53 -2.38 -0.02 1.57 16 37 H 0.08 1.76 7.14 -2.38 -0.02 1.75 16 38 H 0.06 1.01 7.19 -2.39 -0.02 1.00 16 39 H 0.08 0.87 7.44 -2.39 -0.02 0.85 16 40 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.08 0.88 7.47 -2.39 -0.02 0.86 16 43 H 0.06 1.00 6.60 -2.38 -0.02 0.99 16 44 H 0.16 1.17 7.26 -2.91 -0.02 1.15 16 45 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 46 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16 47 H 0.15 3.11 5.91 -2.91 -0.02 3.09 16 Total: -1.00 -72.41 382.56 -0.41 -72.82 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.35 Total: 20.02 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 6.24 Total: -15.21 kcal Atomic # 7 Polarization: -132.42 SS G_CDS: -4.42 Total: -136.84 kcal Atomic # 8 Polarization: -87.96 SS G_CDS: -4.27 Total: -92.23 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 106.25 SS G_CDS: -0.34 Total: 105.91 kcal Total: -72.41 -0.41 -72.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416637359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.028 kcal (2) G-P(sol) polarization free energy of solvation -72.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds