Wall clock time and date at job start Wed Apr 1 2020 00:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46821 * 2 1 4 4 C 1.50696 * 109.47144 * 119.99764 * 2 1 3 5 5 H 1.08002 * 119.99821 * 114.49102 * 4 2 1 6 6 C 1.37869 * 120.00229 * 294.49202 * 4 2 1 7 7 N 1.31515 * 120.00095 * 164.52587 * 6 4 2 8 8 Si 1.86802 * 120.00055 * 344.79770 * 6 4 2 9 9 H 1.48500 * 109.47226 * 269.72753 * 8 6 4 10 10 H 1.48504 * 109.46735 * 29.72658 * 8 6 4 11 11 H 1.48497 * 109.47182 * 149.72492 * 8 6 4 12 12 N 1.46503 * 109.46839 * 240.00018 * 2 1 3 13 13 C 1.46508 * 119.99926 * 299.99455 * 12 2 1 14 14 S 1.65596 * 120.00083 * 120.00020 * 12 2 1 15 15 O 1.42092 * 106.40337 * 203.53885 * 14 12 2 16 16 O 1.42104 * 106.40050 * 336.45374 * 14 12 2 17 17 N 1.65599 * 107.21899 * 89.99694 * 14 12 2 18 18 C 1.46496 * 120.00406 * 65.00128 * 17 14 12 19 19 C 1.52991 * 109.47449 * 164.99931 * 18 17 14 20 20 C 1.53005 * 109.47308 * 300.00019 * 19 18 17 21 21 C 1.53002 * 109.47377 * 60.00047 * 19 18 17 22 22 C 1.50698 * 109.47025 * 180.02562 * 19 18 17 23 23 C 1.38679 * 120.41642 * 179.71894 * 22 19 18 24 24 C 1.38630 * 118.42116 * 179.78344 * 23 22 19 25 25 C 1.38232 * 119.15773 * 0.51480 * 24 23 22 26 26 N 1.31858 * 120.76486 * 359.72452 * 25 24 23 27 27 C 1.31888 * 121.72134 * 0.02562 * 26 25 24 28 28 H 1.09007 * 109.46851 * 173.77444 * 1 2 3 29 29 H 1.08998 * 109.47107 * 293.76516 * 1 2 3 30 30 H 1.08996 * 109.47394 * 53.77285 * 1 2 3 31 31 H 0.96993 * 120.00377 * 355.18434 * 7 6 4 32 32 H 1.08998 * 109.46944 * 90.00357 * 13 12 2 33 33 H 1.08996 * 109.46907 * 209.99921 * 13 12 2 34 34 H 1.08998 * 109.46952 * 330.00279 * 13 12 2 35 35 H 0.97003 * 119.99684 * 245.00392 * 17 14 12 36 36 H 1.08997 * 109.46718 * 285.00270 * 18 17 14 37 37 H 1.09004 * 109.46661 * 44.99333 * 18 17 14 38 38 H 1.09002 * 109.47040 * 59.99900 * 20 19 18 39 39 H 1.09000 * 109.47146 * 179.97438 * 20 19 18 40 40 H 1.08999 * 109.47182 * 300.00425 * 20 19 18 41 41 H 1.08997 * 109.46958 * 59.99558 * 21 19 18 42 42 H 1.08996 * 109.47233 * 180.02562 * 21 19 18 43 43 H 1.09002 * 109.46931 * 300.00075 * 21 19 18 44 44 H 1.07998 * 120.79319 * 0.02562 * 23 22 19 45 45 H 1.07999 * 120.42166 * 180.22178 * 24 23 22 46 46 H 1.07999 * 119.61975 * 179.75216 * 25 24 23 47 47 H 1.07999 * 119.61187 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.5779 -1.6374 1.1339 6 6 1.7955 -0.1768 2.4795 7 7 1.9532 -0.9202 3.5528 8 14 1.2432 1.5998 2.6468 9 1 2.4336 2.4781 2.7770 10 1 0.4676 1.9925 1.4428 11 1 0.3894 1.7412 3.8535 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 16 2.9703 0.1141 -2.2863 15 8 2.8226 -0.5646 -3.5259 16 8 2.6902 1.4972 -2.1194 17 7 4.5437 -0.1043 -1.8181 18 6 5.1358 -1.4440 -1.8416 19 6 6.6577 -1.3311 -1.7336 20 6 7.1935 -0.5160 -2.9124 21 6 7.0257 -0.6338 -0.4224 22 6 7.2667 -2.7093 -1.7584 23 6 8.6418 -2.8708 -1.6794 24 6 9.1573 -4.1574 -1.7012 25 6 8.2905 -5.2286 -1.8112 26 7 6.9882 -5.0371 -1.8892 27 6 6.4625 -3.8277 -1.8665 28 1 -0.3633 -1.0217 -0.1115 29 1 -0.3633 0.4141 0.9405 30 1 -0.3634 0.6073 -0.8290 31 1 2.1679 -1.8619 3.4633 32 1 0.7376 -2.1445 -1.9993 33 1 2.4628 -2.5819 -1.9864 34 1 1.5296 -2.5969 -0.4707 35 1 5.0732 0.6550 -1.5283 36 1 4.7540 -2.0246 -1.0018 37 1 4.8735 -1.9408 -2.7758 38 1 6.7530 0.4809 -2.8950 39 1 8.2778 -0.4351 -2.8353 40 1 6.9314 -1.0126 -3.8466 41 1 6.6439 -1.2144 0.4174 42 1 8.1099 -0.5529 -0.3457 43 1 6.5852 0.3631 -0.4049 44 1 9.2953 -2.0147 -1.5987 45 1 10.2230 -4.3207 -1.6379 46 1 8.6843 -6.2339 -1.8330 47 1 5.3910 -3.7102 -1.9331 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416637360.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:22 Heat of formation + Delta-G solvation = -44.721399 kcal Electronic energy + Delta-G solvation = -29346.995013 eV Core-core repulsion = 25463.587355 eV Total energy + Delta-G solvation = -3883.407659 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.69717 -37.79795 -36.80144 -36.37034 -35.39846 -33.56567 -32.61778 -32.10362 -30.24474 -29.86071 -27.39212 -26.51483 -25.71625 -24.67025 -23.67618 -23.15761 -20.72474 -19.63422 -19.04898 -17.65227 -17.55128 -17.14458 -16.97524 -16.51931 -15.65271 -15.29520 -14.85393 -14.81058 -14.22964 -14.06421 -13.89326 -13.66652 -13.55237 -13.30668 -13.24686 -12.97078 -12.64924 -12.37249 -12.13526 -12.07658 -12.02521 -11.82329 -11.75328 -11.66503 -11.56785 -11.35721 -11.33557 -11.27589 -10.83714 -10.74533 -10.53273 -10.10650 -9.94096 -9.64688 -9.52813 -9.32866 -9.13932 -9.11758 -8.46973 -8.13095 -6.51912 -4.18545 0.94850 1.11083 1.11939 3.32509 3.38091 3.42809 3.55444 3.65076 3.99248 4.21626 4.36508 4.42548 4.49868 4.72418 4.77887 4.79560 4.90215 4.95432 5.02917 5.16882 5.34949 5.36629 5.45633 5.49578 5.57707 5.65792 5.70069 5.76394 5.79300 5.89410 5.96018 6.03706 6.10385 6.14519 6.17320 6.21445 6.37557 6.46109 6.53266 6.56025 6.66584 6.94376 7.14918 7.29918 7.48381 7.83842 7.91789 8.28904 8.81109 9.49714 10.84291 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.004011 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.034640 B = 6978.844086 C = 7692.623780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.245 3.755 3 H 0.049 0.951 4 C -0.607 4.607 5 H 0.065 0.935 6 C 0.038 3.962 7 N -0.901 5.901 8 Si 1.029 2.971 9 H -0.284 1.284 10 H -0.267 1.267 11 H -0.284 1.284 12 N -0.985 5.985 13 C 0.105 3.895 14 S 2.783 3.217 15 O -0.994 6.994 16 O -0.984 6.984 17 N -1.124 6.124 18 C 0.128 3.872 19 C -0.025 4.025 20 C -0.139 4.139 21 C -0.140 4.140 22 C -0.115 4.115 23 C -0.070 4.070 24 C -0.172 4.172 25 C 0.090 3.910 26 N -0.480 5.480 27 C 0.098 3.902 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.027 0.973 31 H 0.269 0.731 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.412 0.588 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.153 0.847 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.006 -3.200 -10.655 17.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.140 3.860 3 H 0.067 0.933 4 C -0.646 4.646 5 H 0.083 0.917 6 C -0.168 4.168 7 N -0.535 5.535 8 Si 0.857 3.143 9 H -0.210 1.210 10 H -0.192 1.192 11 H -0.210 1.210 12 N -0.827 5.827 13 C -0.041 4.041 14 S 2.791 3.209 15 O -0.978 6.978 16 O -0.968 6.968 17 N -0.884 5.884 18 C 0.001 3.999 19 C -0.027 4.027 20 C -0.196 4.196 21 C -0.197 4.197 22 C -0.117 4.117 23 C -0.096 4.096 24 C -0.192 4.192 25 C -0.068 4.068 26 N -0.188 5.188 27 C -0.058 4.058 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.247 0.753 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.171 0.829 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.672 -2.435 -10.448 15.853 hybrid contribution 1.382 -0.494 -0.385 1.517 sum 13.054 -2.929 -10.832 17.214 Atomic orbital electron populations 1.22413 0.98493 1.00391 0.99879 1.19027 0.91299 0.92895 0.82759 0.93317 1.22202 1.40391 1.11288 0.90738 0.91669 1.25624 0.94170 1.05120 0.91916 1.70814 1.43642 1.08237 1.30770 0.84321 0.77681 0.75860 0.76466 1.21030 1.19199 1.20969 1.57487 1.64636 1.21424 1.39110 1.21239 0.99127 0.81745 1.02025 1.01780 0.72633 0.73075 0.73375 1.93552 1.85979 1.76271 1.41953 1.93585 1.83731 1.32521 1.86950 1.56000 1.32164 1.14824 1.85399 1.21363 0.92527 0.83952 1.02083 1.19604 0.94130 0.91596 0.97406 1.21899 1.00650 1.00128 0.96941 1.21901 1.01218 1.00959 0.95655 1.20743 0.94421 0.95988 1.00577 1.21396 0.94589 0.97563 0.96012 1.22119 1.01340 0.93508 1.02227 1.22777 0.88950 0.99344 0.95691 1.67734 1.14245 1.25179 1.11618 1.22873 1.00774 0.87076 0.95115 0.93173 0.92280 0.95404 0.92109 0.93687 0.93085 0.90007 0.75300 0.90873 0.90429 0.91555 0.92325 0.92128 0.91545 0.92365 0.91500 0.84908 0.84902 0.82940 0.82455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.57 37.16 0.32 -2.93 16 2 C 0.24 5.54 2.17 -69.08 -0.15 5.39 16 3 H 0.05 1.16 5.54 -51.93 -0.29 0.87 16 4 C -0.61 -15.38 8.37 -34.45 -0.29 -15.67 16 5 H 0.07 1.74 7.38 -52.49 -0.39 1.35 16 6 C 0.04 1.02 5.33 -17.82 -0.09 0.93 16 7 N -0.90 -25.99 13.70 55.43 0.76 -25.23 16 8 Si 1.03 23.99 26.17 -169.99 -4.45 19.55 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.27 -5.80 5.53 56.52 0.31 -5.49 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 N -0.98 -19.25 3.12 -115.85 -0.36 -19.62 16 13 C 0.11 1.80 9.16 59.85 0.55 2.34 16 14 S 2.78 51.05 6.09 -107.50 -0.66 50.40 16 15 O -0.99 -19.20 16.68 -57.18 -0.95 -20.16 16 16 O -0.98 -20.78 16.70 -57.18 -0.95 -21.74 16 17 N -1.12 -16.44 5.39 -10.62 -0.06 -16.50 16 18 C 0.13 1.65 3.80 -4.05 -0.02 1.64 16 19 C -0.03 -0.27 0.63 -155.66 -0.10 -0.37 16 20 C -0.14 -1.32 8.12 37.16 0.30 -1.02 16 21 C -0.14 -1.52 8.13 37.16 0.30 -1.22 16 22 C -0.11 -1.25 4.76 -104.48 -0.50 -1.75 16 23 C -0.07 -0.64 8.85 -39.27 -0.35 -0.99 16 24 C -0.17 -1.49 10.11 -39.44 -0.40 -1.88 16 25 C 0.09 0.90 11.18 -17.54 -0.20 0.71 16 26 N -0.48 -6.13 10.36 -13.25 -0.14 -6.27 16 27 C 0.10 1.21 10.15 -17.55 -0.18 1.03 16 28 H 0.05 1.01 7.47 -51.93 -0.39 0.62 16 29 H 0.06 1.28 5.06 -51.93 -0.26 1.02 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.27 7.72 8.73 -40.82 -0.36 7.36 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.75 7.79 -51.93 -0.40 0.34 16 34 H 0.08 1.48 6.92 -51.93 -0.36 1.12 16 35 H 0.41 5.37 6.47 -34.47 -0.22 5.15 16 36 H 0.07 1.00 7.53 -51.93 -0.39 0.61 16 37 H 0.08 0.98 7.14 -51.93 -0.37 0.61 16 38 H 0.07 0.63 7.20 -51.93 -0.37 0.25 16 39 H 0.06 0.46 7.44 -51.93 -0.39 0.07 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.52 7.48 -51.93 -0.39 0.13 16 43 H 0.07 0.72 6.60 -51.93 -0.34 0.38 16 44 H 0.13 0.96 7.26 -52.49 -0.38 0.57 16 45 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 47 H 0.16 1.85 5.91 -52.49 -0.31 1.54 16 LS Contribution 377.90 15.07 5.69 5.69 Total: -1.00 -32.46 377.90 -8.94 -41.40 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -7.03 Total: 6.27 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -0.79 Total: -13.80 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: 0.20 Total: -67.62 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -1.91 Total: -41.89 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -4.45 Total: 19.55 kcal Atomic # 16 Polarization: 51.05 SS G_CDS: -0.66 Total: 50.40 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.46 -8.94 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416637360.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.320 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds