Wall clock time and date at job start Wed Apr 1 2020 00:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46821 * 2 1 4 4 C 1.50696 * 109.47144 * 119.99764 * 2 1 3 5 5 H 1.08002 * 119.99821 * 114.49102 * 4 2 1 6 6 C 1.37869 * 120.00229 * 294.49202 * 4 2 1 7 7 N 1.31515 * 120.00095 * 164.52587 * 6 4 2 8 8 Si 1.86802 * 120.00055 * 344.79770 * 6 4 2 9 9 H 1.48500 * 109.47226 * 269.72753 * 8 6 4 10 10 H 1.48504 * 109.46735 * 29.72658 * 8 6 4 11 11 H 1.48497 * 109.47182 * 149.72492 * 8 6 4 12 12 N 1.46503 * 109.46839 * 240.00018 * 2 1 3 13 13 C 1.46508 * 119.99926 * 299.99455 * 12 2 1 14 14 S 1.65596 * 120.00083 * 120.00020 * 12 2 1 15 15 O 1.42092 * 106.40337 * 203.53885 * 14 12 2 16 16 O 1.42104 * 106.40050 * 336.45374 * 14 12 2 17 17 N 1.65599 * 107.21899 * 89.99694 * 14 12 2 18 18 C 1.46496 * 120.00406 * 65.00128 * 17 14 12 19 19 C 1.52991 * 109.47449 * 164.99931 * 18 17 14 20 20 C 1.53005 * 109.47308 * 300.00019 * 19 18 17 21 21 C 1.53002 * 109.47377 * 60.00047 * 19 18 17 22 22 C 1.50698 * 109.47025 * 180.02562 * 19 18 17 23 23 C 1.38679 * 120.41642 * 179.71894 * 22 19 18 24 24 C 1.38630 * 118.42116 * 179.78344 * 23 22 19 25 25 C 1.38232 * 119.15773 * 0.51480 * 24 23 22 26 26 N 1.31858 * 120.76486 * 359.72452 * 25 24 23 27 27 C 1.31888 * 121.72134 * 0.02562 * 26 25 24 28 28 H 1.09007 * 109.46851 * 173.77444 * 1 2 3 29 29 H 1.08998 * 109.47107 * 293.76516 * 1 2 3 30 30 H 1.08996 * 109.47394 * 53.77285 * 1 2 3 31 31 H 0.96993 * 120.00377 * 355.18434 * 7 6 4 32 32 H 1.08998 * 109.46944 * 90.00357 * 13 12 2 33 33 H 1.08996 * 109.46907 * 209.99921 * 13 12 2 34 34 H 1.08998 * 109.46952 * 330.00279 * 13 12 2 35 35 H 0.97003 * 119.99684 * 245.00392 * 17 14 12 36 36 H 1.08997 * 109.46718 * 285.00270 * 18 17 14 37 37 H 1.09004 * 109.46661 * 44.99333 * 18 17 14 38 38 H 1.09002 * 109.47040 * 59.99900 * 20 19 18 39 39 H 1.09000 * 109.47146 * 179.97438 * 20 19 18 40 40 H 1.08999 * 109.47182 * 300.00425 * 20 19 18 41 41 H 1.08997 * 109.46958 * 59.99558 * 21 19 18 42 42 H 1.08996 * 109.47233 * 180.02562 * 21 19 18 43 43 H 1.09002 * 109.46931 * 300.00075 * 21 19 18 44 44 H 1.07998 * 120.79319 * 0.02562 * 23 22 19 45 45 H 1.07999 * 120.42166 * 180.22178 * 24 23 22 46 46 H 1.07999 * 119.61975 * 179.75216 * 25 24 23 47 47 H 1.07999 * 119.61187 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.5779 -1.6374 1.1339 6 6 1.7955 -0.1768 2.4795 7 7 1.9532 -0.9202 3.5528 8 14 1.2432 1.5998 2.6468 9 1 2.4336 2.4781 2.7770 10 1 0.4676 1.9925 1.4428 11 1 0.3894 1.7412 3.8535 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 16 2.9703 0.1141 -2.2863 15 8 2.8226 -0.5646 -3.5259 16 8 2.6902 1.4972 -2.1194 17 7 4.5437 -0.1043 -1.8181 18 6 5.1358 -1.4440 -1.8416 19 6 6.6577 -1.3311 -1.7336 20 6 7.1935 -0.5160 -2.9124 21 6 7.0257 -0.6338 -0.4224 22 6 7.2667 -2.7093 -1.7584 23 6 8.6418 -2.8708 -1.6794 24 6 9.1573 -4.1574 -1.7012 25 6 8.2905 -5.2286 -1.8112 26 7 6.9882 -5.0371 -1.8892 27 6 6.4625 -3.8277 -1.8665 28 1 -0.3633 -1.0217 -0.1115 29 1 -0.3633 0.4141 0.9405 30 1 -0.3634 0.6073 -0.8290 31 1 2.1679 -1.8619 3.4633 32 1 0.7376 -2.1445 -1.9993 33 1 2.4628 -2.5819 -1.9864 34 1 1.5296 -2.5969 -0.4707 35 1 5.0732 0.6550 -1.5283 36 1 4.7540 -2.0246 -1.0018 37 1 4.8735 -1.9408 -2.7758 38 1 6.7530 0.4809 -2.8950 39 1 8.2778 -0.4351 -2.8353 40 1 6.9314 -1.0126 -3.8466 41 1 6.6439 -1.2144 0.4174 42 1 8.1099 -0.5529 -0.3457 43 1 6.5852 0.3631 -0.4049 44 1 9.2953 -2.0147 -1.5987 45 1 10.2230 -4.3207 -1.6379 46 1 8.6843 -6.2339 -1.8330 47 1 5.3910 -3.7102 -1.9331 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416637360.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:21 Heat of formation + Delta-G solvation = -68.126235 kcal Electronic energy + Delta-G solvation = -29348.009923 eV Core-core repulsion = 25463.587355 eV Total energy + Delta-G solvation = -3884.422568 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.50589 -38.76732 -38.34976 -38.03609 -36.96277 -34.63519 -34.58403 -32.90754 -31.62793 -31.05441 -28.20173 -27.55460 -27.20848 -26.60622 -24.48392 -23.99854 -22.48667 -20.54673 -20.46789 -19.50422 -18.93767 -18.51038 -18.09288 -17.57631 -16.98137 -16.30306 -16.06534 -15.80294 -15.63207 -15.39602 -15.04036 -14.99786 -14.70420 -14.62251 -14.39136 -14.04959 -13.94725 -13.60304 -13.54271 -13.51242 -13.28598 -13.24300 -13.22921 -13.03697 -13.01692 -12.86924 -12.47980 -12.26243 -12.17606 -12.12322 -11.91464 -11.72918 -11.42298 -11.11151 -10.72664 -10.55915 -10.43133 -10.32808 -9.90967 -9.84068 -8.63690 -6.30604 -0.36243 0.17319 0.36477 1.52656 1.53257 1.71533 1.91017 2.50423 2.54701 2.86138 3.10837 3.29922 3.44248 3.51724 3.71081 3.88676 3.95252 4.05320 4.07404 4.11797 4.26668 4.39909 4.48971 4.59219 4.60754 4.64438 4.70610 4.76777 4.77699 4.82362 4.83532 4.90267 4.92243 4.96506 5.05749 5.07469 5.16585 5.29501 5.31407 5.34857 5.36403 5.53001 5.71671 5.79370 5.98536 6.08902 6.12978 6.68693 7.04347 7.43866 8.70616 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.004011 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.034640 B = 6978.844086 C = 7692.623780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.245 3.755 3 H 0.044 0.956 4 C -0.591 4.591 5 H 0.041 0.959 6 C -0.007 4.007 7 N -0.936 5.936 8 Si 1.058 2.942 9 H -0.275 1.275 10 H -0.242 1.242 11 H -0.285 1.285 12 N -0.993 5.993 13 C 0.101 3.899 14 S 2.798 3.202 15 O -1.002 7.002 16 O -1.009 7.009 17 N -1.114 6.114 18 C 0.123 3.877 19 C -0.017 4.017 20 C -0.138 4.138 21 C -0.139 4.139 22 C -0.121 4.121 23 C -0.071 4.071 24 C -0.163 4.163 25 C 0.076 3.924 26 N -0.513 5.513 27 C 0.072 3.928 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.255 0.745 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.421 0.579 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.041 0.959 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.160 0.840 45 H 0.168 0.832 46 H 0.176 0.824 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.789 -2.338 -11.966 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.139 3.861 3 H 0.062 0.938 4 C -0.630 4.630 5 H 0.060 0.940 6 C -0.207 4.207 7 N -0.572 5.572 8 Si 0.880 3.120 9 H -0.200 1.200 10 H -0.165 1.165 11 H -0.211 1.211 12 N -0.833 5.833 13 C -0.045 4.045 14 S 2.806 3.194 15 O -0.986 6.986 16 O -0.993 6.993 17 N -0.877 5.877 18 C -0.003 4.003 19 C -0.019 4.019 20 C -0.196 4.196 21 C -0.197 4.197 22 C -0.123 4.123 23 C -0.096 4.096 24 C -0.182 4.182 25 C -0.081 4.081 26 N -0.222 5.222 27 C -0.084 4.084 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.258 0.742 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.178 0.822 45 H 0.186 0.814 46 H 0.193 0.807 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 13.446 -1.578 -11.785 17.949 hybrid contribution 0.938 -0.893 -0.038 1.296 sum 14.384 -2.471 -11.823 18.783 Atomic orbital electron populations 1.22381 0.97271 1.01294 1.00431 1.18842 0.92269 0.92376 0.82640 0.93836 1.22300 1.38706 1.10070 0.91931 0.94050 1.26702 0.94226 1.07786 0.92001 1.70926 1.46659 1.07751 1.31817 0.83973 0.78095 0.72540 0.77395 1.20045 1.16531 1.21142 1.57464 1.65461 1.22249 1.38159 1.21367 1.00735 0.80643 1.01759 1.01217 0.72987 0.72152 0.73011 1.93540 1.86433 1.76301 1.42296 1.93543 1.84513 1.34050 1.87239 1.55698 1.30931 1.15987 1.85077 1.21492 0.94458 0.82656 1.01699 1.19524 0.92213 0.92093 0.98062 1.21917 1.02161 0.99622 0.95851 1.21906 1.02788 1.00296 0.94687 1.20744 0.95318 0.95236 1.01029 1.21746 0.93972 0.98929 0.95001 1.22497 1.02876 0.92674 1.00169 1.23285 0.88345 1.01179 0.95277 1.67684 1.15999 1.25580 1.12908 1.22865 1.00844 0.87833 0.96875 0.92527 0.92712 0.93550 0.93541 0.92226 0.90999 0.91496 0.74213 0.92234 0.90122 0.91514 0.89965 0.92580 0.93947 0.89871 0.91626 0.82235 0.81440 0.80698 0.83413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.37 8.57 71.98 0.62 -5.75 16 2 C 0.24 10.89 2.17 44.24 0.10 10.99 16 3 H 0.04 2.02 5.54 -2.39 -0.01 2.00 16 4 C -0.59 -30.30 8.37 25.60 0.21 -30.09 16 5 H 0.04 2.28 7.38 -2.91 -0.02 2.26 16 6 C -0.01 -0.39 5.33 84.65 0.45 0.06 16 7 N -0.94 -55.28 13.70 21.44 0.29 -54.99 16 8 Si 1.06 47.77 26.17 68.60 1.80 49.57 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.24 -9.86 5.53 99.48 0.55 -9.31 16 11 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 12 N -0.99 -38.26 3.12 -520.43 -1.62 -39.89 16 13 C 0.10 3.41 9.16 127.77 1.17 4.58 16 14 S 2.80 100.24 6.09 -56.49 -0.34 99.90 16 15 O -1.00 -37.57 16.68 -128.00 -2.14 -39.70 16 16 O -1.01 -41.52 16.70 -128.00 -2.14 -43.66 16 17 N -1.11 -31.88 5.39 -187.51 -1.01 -32.89 16 18 C 0.12 3.18 3.80 86.38 0.33 3.51 16 19 C -0.02 -0.34 0.63 -52.93 -0.03 -0.37 16 20 C -0.14 -2.32 8.12 71.98 0.58 -1.73 16 21 C -0.14 -2.84 8.13 71.98 0.58 -2.26 16 22 C -0.12 -2.50 4.76 -19.78 -0.09 -2.59 16 23 C -0.07 -1.11 8.85 22.47 0.20 -0.91 16 24 C -0.16 -2.33 10.11 22.36 0.23 -2.10 16 25 C 0.08 1.42 11.18 84.69 0.95 2.37 16 26 N -0.51 -13.12 10.36 -195.84 -2.03 -15.15 16 27 C 0.07 1.79 10.15 84.67 0.86 2.65 16 28 H 0.06 2.22 7.47 -2.38 -0.02 2.20 16 29 H 0.05 2.28 5.06 -2.39 -0.01 2.27 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.26 15.27 8.73 -92.71 -0.81 14.46 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 2.10 7.79 -2.39 -0.02 2.08 16 34 H 0.07 2.46 6.92 -2.39 -0.02 2.44 16 35 H 0.42 10.56 6.47 -96.74 -0.63 9.93 16 36 H 0.06 1.70 7.53 -2.39 -0.02 1.68 16 37 H 0.08 2.03 7.14 -2.38 -0.02 2.01 16 38 H 0.07 1.11 7.20 -2.39 -0.02 1.09 16 39 H 0.08 0.99 7.44 -2.39 -0.02 0.98 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.08 1.26 7.48 -2.39 -0.02 1.24 16 43 H 0.06 1.33 6.60 -2.39 -0.02 1.32 16 44 H 0.16 1.60 7.26 -2.91 -0.02 1.58 16 45 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 46 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 47 H 0.15 3.71 5.91 -2.91 -0.02 3.70 16 Total: -1.00 -70.16 377.90 -0.88 -71.04 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.16 Total: 27.42 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 6.15 Total: -21.65 kcal Atomic # 7 Polarization: -138.54 SS G_CDS: -4.37 Total: -142.91 kcal Atomic # 8 Polarization: -79.09 SS G_CDS: -4.27 Total: -83.36 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 1.80 Total: 49.57 kcal Atomic # 16 Polarization: 100.24 SS G_CDS: -0.34 Total: 99.90 kcal Total: -70.16 -0.88 -71.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416637360.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.916 kcal (2) G-P(sol) polarization free energy of solvation -70.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds