Wall clock time and date at job start Wed Apr 1 2020 00:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47068 * 2 1 4 4 C 1.50696 * 109.47282 * 239.99609 * 2 1 3 5 5 O 1.21284 * 120.00247 * 253.55846 * 4 2 1 6 6 N 1.34774 * 120.00212 * 73.55914 * 4 2 1 7 7 C 1.46502 * 120.00451 * 185.42463 * 6 4 2 8 8 C 1.53002 * 109.47222 * 175.32868 * 7 6 4 9 9 C 1.50702 * 115.54982 * 65.83995 * 8 7 6 10 10 H 1.07994 * 119.99997 * 264.45099 * 9 8 7 11 11 C 1.37874 * 119.99706 * 84.45269 * 9 8 7 12 12 N 1.31514 * 120.00283 * 1.84928 * 11 9 8 13 13 Si 1.86809 * 120.00037 * 181.85529 * 11 9 8 14 14 H 1.48497 * 109.47036 * 89.99734 * 13 11 9 15 15 H 1.48494 * 109.46960 * 209.99877 * 13 11 9 16 16 H 1.48505 * 109.46653 * 329.99849 * 13 11 9 17 17 C 1.52996 * 117.49536 * 280.17285 * 8 7 6 18 18 C 1.53000 * 117.49725 * 211.51351 * 8 7 6 19 19 N 1.46504 * 109.47024 * 119.99882 * 2 1 3 20 20 N 1.28728 * 125.34325 * 59.97219 * 19 2 1 21 21 N 1.28992 * 108.94284 * 179.74533 * 20 19 2 22 22 C 1.34048 * 107.26736 * 0.43676 * 21 20 19 23 23 C 1.48459 * 126.67119 * 179.83316 * 22 21 20 24 24 C 1.39296 * 120.11935 * 359.68582 * 23 22 21 25 25 C 1.38029 * 119.88002 * 179.97438 * 24 23 22 26 26 C 1.38309 * 120.12281 * 359.97438 * 25 24 23 27 27 C 1.38319 * 120.23315 * 0.27678 * 26 25 24 28 28 C 1.38028 * 120.11780 * 359.48575 * 27 26 25 29 29 N 1.28878 * 125.34097 * 240.00042 * 19 2 1 30 30 H 1.08996 * 109.47378 * 54.90655 * 1 2 3 31 31 H 1.09003 * 109.47359 * 174.90956 * 1 2 3 32 32 H 1.09005 * 109.47386 * 294.90706 * 1 2 3 33 33 H 0.97009 * 119.99628 * 5.42477 * 6 4 2 34 34 H 1.08998 * 109.46711 * 295.32611 * 7 6 4 35 35 H 1.08999 * 109.46744 * 55.32769 * 7 6 4 36 36 H 0.97002 * 120.00087 * 185.01710 * 12 11 9 37 37 H 1.08998 * 117.50480 * 359.97438 * 17 8 7 38 38 H 1.09002 * 117.49823 * 145.02510 * 17 8 7 39 39 H 1.08994 * 117.49422 * 214.97958 * 18 8 7 40 40 H 1.08996 * 117.49841 * 359.97438 * 18 8 7 41 41 H 1.07997 * 120.06238 * 0.02562 * 24 23 22 42 42 H 1.08003 * 119.94201 * 180.02562 * 25 24 23 43 43 H 1.07995 * 119.88762 * 179.97438 * 26 25 24 44 44 H 1.08001 * 119.94419 * 179.74792 * 27 26 25 45 45 H 1.07997 * 120.06049 * 180.25822 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.5148 -1.8192 -1.1359 6 7 1.9455 -0.1138 -2.4357 7 6 2.3230 -0.8485 -3.6457 8 6 2.0232 0.0085 -4.8772 9 6 2.8450 1.2647 -5.0106 10 1 2.4552 2.2057 -4.6515 11 6 4.0945 1.2126 -5.5911 12 7 4.5542 0.0736 -6.0612 13 14 5.1346 2.7598 -5.7097 14 1 5.9777 2.8838 -4.4936 15 1 6.0054 2.6800 -6.9098 16 1 4.2472 3.9455 -5.8199 17 6 0.5753 0.0560 -5.3692 18 6 1.6293 -0.7182 -6.1647 19 7 2.0183 -0.6906 1.1962 20 7 1.7711 -1.9165 1.5014 21 7 2.3598 -2.1979 2.6141 22 6 2.9938 -1.0890 3.0204 23 6 3.8044 -0.9328 4.2543 24 6 3.9599 -2.0057 5.1290 25 6 4.7151 -1.8551 6.2745 26 6 5.3172 -0.6419 6.5544 27 6 5.1617 0.4283 5.6920 28 6 4.4128 0.2872 4.5412 29 7 2.7623 -0.1659 2.1084 30 1 -0.3634 0.5908 -0.8408 31 1 -0.3634 -1.0236 -0.0912 32 1 -0.3634 0.4328 0.9321 33 1 1.6331 0.8022 -2.5021 34 1 3.3880 -1.0784 -3.6136 35 1 1.7525 -1.7757 -3.7006 36 1 5.4604 0.0205 -6.4032 37 1 -0.1636 -0.5237 -4.8159 38 1 0.2172 0.9956 -5.7899 39 1 1.9644 -0.2875 -7.1082 40 1 1.5843 -1.8068 -6.1345 41 1 3.4912 -2.9539 4.9108 42 1 4.8367 -2.6864 6.9532 43 1 5.9069 -0.5281 7.4520 44 1 5.6307 1.3747 5.9172 45 1 4.2954 1.1221 3.8663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431174791.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:04 Heat of formation + Delta-G solvation = 143.062268 kcal Electronic energy + Delta-G solvation = -28443.372736 eV Core-core repulsion = 24464.956789 eV Total energy + Delta-G solvation = -3978.415948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.25539 -39.69231 -39.23565 -36.93677 -35.48738 -33.72698 -33.52222 -32.27943 -32.05134 -31.17712 -30.04096 -26.83255 -25.76275 -25.24606 -24.53278 -23.25787 -22.15620 -21.63415 -21.27147 -20.10622 -19.53407 -18.07151 -17.46049 -17.17830 -16.57610 -16.12693 -15.82670 -15.22435 -15.04975 -14.87139 -14.75300 -14.20472 -14.08549 -13.68408 -13.58422 -13.49040 -13.19448 -13.05884 -12.87625 -12.68995 -12.44074 -11.99692 -11.81994 -11.70324 -11.55154 -11.35838 -11.10150 -11.06030 -11.02657 -10.89073 -10.80823 -10.61696 -10.35980 -9.83293 -9.54207 -9.20694 -9.17259 -8.80378 -8.63769 -8.48587 -8.27175 -6.18266 -4.28759 0.62447 1.14904 1.34211 1.70145 2.40164 2.67699 3.19309 3.27749 3.27985 3.31722 3.62962 3.67235 4.17229 4.26789 4.39180 4.51478 4.68852 4.70954 4.84481 4.85680 5.10294 5.13628 5.15716 5.21371 5.27126 5.36187 5.38819 5.62143 5.66224 5.79152 5.83960 5.87323 6.05951 6.20202 6.22533 6.23069 6.28101 6.32118 6.39275 6.57415 6.65726 6.67166 6.98177 7.00981 7.26101 7.39595 7.70120 7.88111 8.20678 8.39433 8.42245 8.73289 9.39830 10.89620 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014192 B = 0.002464 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.437524 B =11360.152364 C =12547.869803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.137 3.863 3 H 0.145 0.855 4 C 0.497 3.503 5 O -0.524 6.524 6 N -0.689 5.689 7 C 0.164 3.836 8 C 0.023 3.977 9 C -0.503 4.503 10 H 0.061 0.939 11 C 0.074 3.926 12 N -0.873 5.873 13 Si 0.889 3.111 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.210 4.210 18 C -0.142 4.142 19 N -0.121 5.121 20 N -0.020 5.020 21 N -0.282 5.282 22 C 0.201 3.799 23 C -0.006 4.006 24 C -0.080 4.080 25 C -0.123 4.123 26 C -0.107 4.107 27 C -0.123 4.123 28 C -0.083 4.083 29 N -0.302 5.302 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.404 0.596 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.136 0.864 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.532 2.015 20.154 20.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.032 3.968 3 H 0.163 0.837 4 C 0.277 3.723 5 O -0.400 6.400 6 N -0.339 5.339 7 C 0.042 3.958 8 C 0.023 3.977 9 C -0.541 4.541 10 H 0.079 0.921 11 C -0.131 4.131 12 N -0.509 5.509 13 Si 0.717 3.283 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.198 1.198 17 C -0.247 4.247 18 C -0.181 4.181 19 N -0.032 5.032 20 N -0.013 5.013 21 N -0.154 5.154 22 C -0.078 4.078 23 C -0.009 4.009 24 C -0.100 4.100 25 C -0.141 4.141 26 C -0.125 4.125 27 C -0.141 4.141 28 C -0.103 4.103 29 N -0.151 5.151 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.239 0.761 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.154 0.846 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.146 0.854 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.475 0.841 19.464 19.989 hybrid contribution 0.955 1.496 -0.015 1.774 sum -3.520 2.336 19.449 19.902 Atomic orbital electron populations 1.22146 0.88953 1.05592 1.04881 1.21846 0.97963 0.97672 0.79333 0.83722 1.19919 0.80823 0.87049 0.84465 1.90812 1.44114 1.19552 1.85549 1.45864 1.65089 1.17468 1.05447 1.21123 1.00299 0.92476 0.81951 1.19027 0.91451 0.96713 0.90558 1.20346 1.01124 0.92182 1.40400 0.92103 1.24997 0.97962 0.96078 0.94030 1.69982 1.16388 1.24980 1.39527 0.86636 0.80448 0.83482 0.77754 1.20584 1.21137 1.19758 1.23030 0.93140 1.01589 1.06937 1.22491 1.01919 0.96034 0.97608 1.49629 1.29951 1.07170 1.16432 1.79018 1.16545 0.97831 1.07892 1.76050 1.11240 1.23296 1.04822 1.23552 1.00768 0.86872 0.96610 1.17291 0.98127 0.95354 0.90161 1.21227 0.97283 0.98321 0.93134 1.21100 0.97899 0.97939 0.97164 1.21314 0.98763 0.93110 0.99357 1.21096 0.99321 0.99320 0.94399 1.21231 0.95571 0.96429 0.97092 1.74826 1.13161 1.26817 1.00321 0.87988 0.89819 0.90384 0.76094 0.90944 0.93741 0.92743 0.91591 0.90255 0.89502 0.91680 0.84649 0.85313 0.85691 0.85366 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.36 37.15 0.35 -1.14 16 2 C 0.14 1.77 3.64 -69.09 -0.25 1.52 16 3 H 0.15 1.46 8.14 -51.93 -0.42 1.04 16 4 C 0.50 8.48 7.10 -10.99 -0.08 8.40 16 5 O -0.52 -11.39 15.71 5.55 0.09 -11.30 16 6 N -0.69 -11.73 5.48 -60.29 -0.33 -12.06 16 7 C 0.16 3.44 5.51 -4.04 -0.02 3.42 16 8 C 0.02 0.51 1.43 -155.66 -0.22 0.29 16 9 C -0.50 -12.18 8.63 -34.44 -0.30 -12.48 16 10 H 0.06 1.43 7.81 -52.49 -0.41 1.02 16 11 C 0.07 1.89 5.43 -17.82 -0.10 1.79 16 12 N -0.87 -23.53 12.74 55.43 0.71 -22.82 16 13 Si 0.89 19.88 29.54 -169.99 -5.02 14.86 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 17 C -0.21 -4.01 9.96 -26.69 -0.27 -4.27 16 18 C -0.14 -3.09 9.24 -26.69 -0.25 -3.34 16 19 N -0.12 -1.90 3.54 -5.90 -0.02 -1.92 16 20 N -0.02 -0.35 12.05 60.35 0.73 0.38 16 21 N -0.28 -4.82 12.23 32.15 0.39 -4.43 16 22 C 0.20 3.12 7.94 -156.31 -1.24 1.88 16 23 C -0.01 -0.08 5.88 -104.89 -0.62 -0.69 16 24 C -0.08 -0.86 9.70 -39.26 -0.38 -1.24 16 25 C -0.12 -1.03 10.03 -39.63 -0.40 -1.43 16 26 C -0.11 -0.82 10.04 -39.53 -0.40 -1.22 16 27 C -0.12 -1.04 10.03 -39.63 -0.40 -1.44 16 28 C -0.08 -0.89 9.70 -39.26 -0.38 -1.27 16 29 N -0.30 -4.70 11.85 32.17 0.38 -4.32 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.40 5.90 8.36 -40.82 -0.34 5.56 16 34 H 0.07 1.79 8.14 -51.93 -0.42 1.36 16 35 H 0.04 0.92 8.09 -51.93 -0.42 0.50 16 36 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.14 1.42 7.89 -52.49 -0.41 1.01 16 42 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 43 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.13 1.37 7.88 -52.49 -0.41 0.95 16 LS Contribution 393.87 15.07 5.94 5.94 Total: -1.00 -31.97 393.87 -8.29 -40.26 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.21 Total: 6.64 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -4.94 Total: -11.22 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 1.86 Total: -45.18 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.97 -8.29 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431174791.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.323 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds