Wall clock time and date at job start Wed Apr 1 2020 00:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47311 * 2 1 4 4 C 1.50699 * 109.47572 * 120.00501 * 2 1 3 5 5 O 1.21279 * 120.00506 * 86.01187 * 4 2 1 6 6 N 1.34777 * 119.99794 * 266.01898 * 4 2 1 7 7 C 1.46505 * 120.00156 * 184.83640 * 6 4 2 8 8 C 1.52998 * 109.46999 * 175.98290 * 7 6 4 9 9 C 1.50694 * 115.55028 * 297.58616 * 8 7 6 10 10 H 1.08001 * 119.99685 * 93.18186 * 9 8 7 11 11 C 1.37875 * 120.00249 * 273.17684 * 9 8 7 12 12 N 1.31507 * 120.00281 * 6.90401 * 11 9 8 13 13 Si 1.86807 * 119.99880 * 186.89565 * 11 9 8 14 14 H 1.48504 * 109.46722 * 90.00424 * 13 11 9 15 15 H 1.48494 * 109.47079 * 210.00177 * 13 11 9 16 16 H 1.48502 * 109.47373 * 330.00744 * 13 11 9 17 17 C 1.53004 * 117.49420 * 151.92150 * 8 7 6 18 18 C 1.53000 * 117.49676 * 83.26364 * 8 7 6 19 19 N 1.46502 * 109.47152 * 239.99989 * 2 1 3 20 20 N 1.28730 * 125.34240 * 300.02713 * 19 2 1 21 21 N 1.28995 * 108.94277 * 179.70039 * 20 19 2 22 22 C 1.34045 * 107.26615 * 0.42979 * 21 20 19 23 23 C 1.48464 * 126.67478 * 179.83449 * 22 21 20 24 24 C 1.39309 * 120.11349 * 359.69227 * 23 22 21 25 25 C 1.38025 * 119.87636 * 179.97438 * 24 23 22 26 26 C 1.38308 * 120.12216 * 359.97438 * 25 24 23 27 27 C 1.38309 * 120.23687 * 0.28173 * 26 25 24 28 28 C 1.38028 * 120.11668 * 359.48539 * 27 26 25 29 29 N 1.28879 * 125.34029 * 119.99668 * 19 2 1 30 30 H 1.08996 * 109.47375 * 58.53799 * 1 2 3 31 31 H 1.09005 * 109.47152 * 178.54459 * 1 2 3 32 32 H 1.08997 * 109.47014 * 298.53604 * 1 2 3 33 33 H 0.97003 * 119.99932 * 4.83411 * 6 4 2 34 34 H 1.09003 * 109.46458 * 295.98567 * 7 6 4 35 35 H 1.09000 * 109.46527 * 55.98262 * 7 6 4 36 36 H 0.97005 * 120.00349 * 185.02892 * 12 11 9 37 37 H 1.08998 * 117.50096 * 0.02562 * 17 8 7 38 38 H 1.09001 * 117.49480 * 145.02194 * 17 8 7 39 39 H 1.09004 * 117.49479 * 214.97478 * 18 8 7 40 40 H 1.08994 * 117.50252 * 359.97438 * 18 8 7 41 41 H 1.07994 * 120.05845 * 359.97438 * 24 23 22 42 42 H 1.08004 * 119.93664 * 179.97438 * 25 24 23 43 43 H 1.08005 * 119.88219 * 179.97438 * 26 25 24 44 44 H 1.08008 * 119.94168 * 179.74601 * 27 26 25 45 45 H 1.08005 * 120.06049 * 180.26291 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.1657 -1.9159 1.2227 6 7 2.3335 -0.0063 2.3394 7 6 2.9214 -0.6818 3.4989 8 6 3.2563 0.3522 4.5758 9 6 4.2777 1.3893 4.1857 10 1 3.9570 2.3351 3.7747 11 6 5.6215 1.1307 4.3537 12 7 6.0194 -0.0664 4.7251 13 14 6.8771 2.4810 4.0534 14 1 7.1162 3.2242 5.3167 15 1 8.1506 1.8775 3.5856 16 1 6.3624 3.4146 3.0196 17 6 3.2457 -0.1161 6.0323 18 6 2.1270 0.7894 5.5109 19 7 2.0183 -0.6906 -1.1962 20 7 1.7711 -1.9166 -1.5013 21 7 2.3502 -2.1946 -2.6199 22 6 2.9938 -1.0891 -3.0204 23 6 3.8044 -0.9328 -4.2543 24 6 3.9600 -2.0058 -5.1290 25 6 4.7142 -1.8549 -6.2750 26 6 5.3146 -0.6410 -6.5560 27 6 5.1678 0.4260 -5.6883 28 6 4.4117 0.2874 -4.5419 29 7 2.7623 -0.1659 -2.1084 30 1 -0.3634 0.5363 -0.8765 31 1 -0.3634 -1.0274 -0.0261 32 1 -0.3633 0.4909 0.9028 33 1 2.1609 0.9478 2.3699 34 1 2.2095 -1.4044 3.8978 35 1 3.8320 -1.1982 3.1953 36 1 6.9569 -0.2290 4.9139 37 1 3.0005 -1.1608 6.2233 38 1 3.9772 0.3264 6.7085 39 1 2.1230 1.8272 5.8443 40 1 1.1454 0.3408 5.3587 41 1 3.4912 -2.9539 -4.9107 42 1 4.8358 -2.6863 -6.9536 43 1 5.9043 -0.5274 -7.4537 44 1 5.6421 1.3706 -5.9104 45 1 4.2942 1.1225 -3.8671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431174792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:06 Heat of formation + Delta-G solvation = 123.365764 kcal Electronic energy + Delta-G solvation = -28602.461986 eV Core-core repulsion = 24623.191934 eV Total energy + Delta-G solvation = -3979.270052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.46176 -41.08013 -40.00387 -38.61090 -36.67861 -35.21722 -34.66370 -34.00025 -33.25181 -31.89656 -30.99071 -28.43054 -27.37830 -26.57489 -25.54030 -24.30691 -23.14834 -22.89445 -22.55944 -21.53721 -21.16340 -19.37879 -18.55593 -18.22411 -18.02758 -17.66618 -16.71049 -16.62973 -16.37409 -16.33105 -15.85284 -15.66655 -15.08769 -14.95208 -14.71261 -14.54726 -14.34468 -14.27929 -13.89531 -13.66154 -13.57539 -13.46479 -13.40048 -13.02753 -12.86074 -12.78583 -12.41762 -12.37448 -12.28776 -12.23782 -12.03234 -11.90791 -11.89148 -11.53481 -11.07140 -10.86831 -10.47724 -10.16166 -9.95389 -9.92094 -9.65018 -8.14331 -6.26974 -0.29424 0.14057 0.43948 0.52298 1.34979 1.40095 1.43145 1.44739 1.50033 1.97914 2.40321 2.62731 2.87607 3.09139 3.15841 3.34964 3.48768 3.56035 3.61039 4.04658 4.07323 4.17202 4.22081 4.34710 4.39580 4.46112 4.51650 4.53297 4.59161 4.63087 4.63939 4.67411 4.89771 4.92898 4.99384 4.99848 5.02220 5.10989 5.27123 5.40998 5.49183 5.49853 5.54903 5.55817 5.65182 5.74861 5.98255 6.32612 6.47274 6.82284 7.07467 7.16852 7.44145 8.93725 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011339 B = 0.002871 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.676807 B = 9751.487615 C =11425.164221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.138 3.862 3 H 0.175 0.825 4 C 0.496 3.504 5 O -0.567 6.567 6 N -0.679 5.679 7 C 0.179 3.821 8 C 0.003 3.997 9 C -0.502 4.502 10 H 0.070 0.930 11 C 0.024 3.976 12 N -0.908 5.908 13 Si 0.943 3.057 14 H -0.276 1.276 15 H -0.298 1.298 16 H -0.260 1.260 17 C -0.162 4.162 18 C -0.169 4.169 19 N -0.123 5.123 20 N -0.045 5.045 21 N -0.304 5.304 22 C 0.201 3.799 23 C -0.040 4.040 24 C -0.092 4.092 25 C -0.121 4.121 26 C -0.096 4.096 27 C -0.122 4.122 28 C -0.093 4.093 29 N -0.308 5.308 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.130 0.870 33 H 0.418 0.582 34 H 0.045 0.955 35 H 0.026 0.974 36 H 0.257 0.743 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.128 0.872 42 H 0.157 0.843 43 H 0.161 0.839 44 H 0.156 0.844 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.901 4.988 -18.999 21.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.035 3.965 3 H 0.192 0.808 4 C 0.278 3.722 5 O -0.445 6.445 6 N -0.329 5.329 7 C 0.055 3.945 8 C 0.002 3.998 9 C -0.539 4.539 10 H 0.088 0.912 11 C -0.177 4.177 12 N -0.546 5.546 13 Si 0.769 3.231 14 H -0.201 1.201 15 H -0.225 1.225 16 H -0.184 1.184 17 C -0.200 4.200 18 C -0.206 4.206 19 N -0.036 5.036 20 N -0.038 5.038 21 N -0.175 5.175 22 C -0.079 4.079 23 C -0.043 4.043 24 C -0.112 4.112 25 C -0.138 4.138 26 C -0.115 4.115 27 C -0.140 4.140 28 C -0.113 4.113 29 N -0.158 5.158 30 H 0.119 0.881 31 H 0.086 0.914 32 H 0.148 0.852 33 H 0.255 0.745 34 H 0.063 0.937 35 H 0.044 0.956 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.146 0.854 42 H 0.174 0.826 43 H 0.178 0.822 44 H 0.173 0.827 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.053 3.739 -18.446 20.472 hybrid contribution 1.389 0.676 0.394 1.594 sum -6.664 4.415 -18.053 19.743 Atomic orbital electron populations 1.22219 0.85971 1.05214 1.07408 1.22184 1.00258 0.97706 0.76353 0.80806 1.20570 0.78729 0.87670 0.85187 1.90789 1.54274 1.15679 1.83785 1.45680 1.60646 1.13128 1.13495 1.20666 0.94485 0.93974 0.85349 1.19031 0.96605 0.96294 0.87892 1.20723 0.89950 1.00519 1.42749 0.91229 1.25690 1.00385 0.96572 0.95041 1.70138 1.16270 1.21433 1.46732 0.85780 0.78592 0.79960 0.78720 1.20137 1.22469 1.18421 1.22427 1.01060 0.97500 0.99037 1.23057 0.92925 0.99343 1.05320 1.49987 1.29803 1.06825 1.16942 1.79025 1.17682 0.98919 1.08178 1.76016 1.12148 1.24426 1.04952 1.24196 1.00053 0.86288 0.97327 1.17521 0.99804 0.96990 0.90022 1.21333 0.98169 0.97695 0.94045 1.21447 0.96728 0.99295 0.96372 1.21770 0.97621 0.92169 0.99891 1.21454 0.98255 1.00917 0.93361 1.21344 0.96093 0.95672 0.98229 1.74831 1.13380 1.26867 1.00718 0.88138 0.91395 0.85187 0.74474 0.93714 0.95582 0.93397 0.91223 0.91925 0.89259 0.88705 0.85364 0.82564 0.82167 0.82665 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.36 71.98 0.67 -1.94 16 2 C 0.14 3.53 3.63 44.24 0.16 3.69 16 3 H 0.17 3.25 8.14 -2.39 -0.02 3.23 16 4 C 0.50 17.21 6.97 87.66 0.61 17.82 16 5 O -0.57 -25.39 15.89 -3.03 -0.05 -25.44 16 6 N -0.68 -23.20 5.43 -463.05 -2.51 -25.72 16 7 C 0.18 7.71 5.51 86.38 0.48 8.18 16 8 C 0.00 0.11 1.42 -52.93 -0.08 0.04 16 9 C -0.50 -24.24 8.59 25.60 0.22 -24.02 16 10 H 0.07 3.17 7.82 -2.91 -0.02 3.15 16 11 C 0.02 1.23 5.38 84.66 0.46 1.69 16 12 N -0.91 -50.89 12.86 21.45 0.28 -50.62 16 13 Si 0.94 41.29 29.55 68.60 2.03 43.32 16 14 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 15 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 16 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 17 C -0.16 -7.00 9.36 30.62 0.29 -6.72 16 18 C -0.17 -6.07 9.96 30.62 0.30 -5.77 16 19 N -0.12 -4.02 3.68 -172.59 -0.63 -4.65 16 20 N -0.05 -1.69 12.00 37.02 0.44 -1.24 16 21 N -0.30 -11.11 12.23 -52.18 -0.64 -11.75 16 22 C 0.20 6.60 7.94 137.38 1.09 7.69 16 23 C -0.04 -1.06 5.88 -20.04 -0.12 -1.18 16 24 C -0.09 -2.06 9.70 22.48 0.22 -1.84 16 25 C -0.12 -1.86 10.03 22.24 0.22 -1.64 16 26 C -0.10 -1.24 10.04 22.30 0.22 -1.02 16 27 C -0.12 -1.88 10.03 22.24 0.22 -1.66 16 28 C -0.09 -2.04 9.70 22.47 0.22 -1.82 16 29 N -0.31 -10.04 11.85 -52.13 -0.62 -10.66 16 30 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.42 11.64 8.37 -92.71 -0.78 10.87 16 34 H 0.04 1.87 8.11 -2.39 -0.02 1.85 16 35 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.26 14.04 8.32 -92.70 -0.77 13.27 16 37 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 38 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 39 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 41 H 0.13 2.93 7.89 -2.91 -0.02 2.90 16 42 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 43 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 44 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 45 H 0.13 2.81 7.88 -2.91 -0.02 2.78 16 Total: -1.00 -73.62 394.12 3.73 -69.90 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.24 Total: 25.34 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 5.19 Total: -8.48 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -3.68 Total: -104.63 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.05 Total: -25.44 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -73.62 3.73 -69.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431174792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.261 kcal (2) G-P(sol) polarization free energy of solvation -73.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds