Wall clock time and date at job start Wed Apr 1 2020 01:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47042 * 2 1 4 4 C 1.46499 * 120.00184 * 270.00045 * 3 2 1 5 5 C 1.50698 * 109.47085 * 270.00052 * 4 3 2 6 6 H 1.08008 * 119.99918 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00285 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99857 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47058 * 60.00036 * 9 7 5 11 11 H 1.48507 * 109.46785 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46915 * 299.99715 * 9 7 5 13 13 C 1.34777 * 119.99966 * 89.99637 * 3 2 1 14 14 O 1.21280 * 119.99934 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99985 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47091 * 185.36906 * 15 13 3 17 17 C 1.46900 * 111.00122 * 76.01102 * 16 15 13 18 18 C 1.52995 * 109.47323 * 189.99863 * 17 16 15 19 19 O 1.42899 * 109.47167 * 65.00387 * 18 17 16 20 20 C 1.42901 * 114.00435 * 180.02562 * 19 18 17 21 21 C 1.46894 * 110.99878 * 199.96752 * 16 15 13 22 22 C 1.50700 * 109.47166 * 75.68647 * 21 16 15 23 23 C 1.33640 * 126.03841 * 84.52212 * 22 21 16 24 24 N 1.31789 * 114.49802 * 180.02562 * 23 22 21 25 25 C 1.29021 * 117.12451 * 359.97438 * 24 23 22 26 26 S 1.70972 * 110.16943 * 359.72119 * 25 24 23 27 27 H 1.08999 * 109.47576 * 300.00032 * 1 2 3 28 28 H 1.09002 * 109.47503 * 59.99944 * 1 2 3 29 29 H 1.09004 * 109.46927 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47576 * 239.99968 * 2 1 3 31 31 H 1.08999 * 109.47166 * 119.99378 * 2 1 3 32 32 H 1.08998 * 109.46815 * 29.99638 * 4 3 2 33 33 H 1.08998 * 109.47338 * 149.99972 * 4 3 2 34 34 H 0.96994 * 120.00000 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.46930 * 65.37261 * 15 13 3 36 36 H 1.09001 * 109.47030 * 305.36502 * 15 13 3 37 37 H 1.08999 * 109.47145 * 310.00286 * 17 16 15 38 38 H 1.09003 * 109.46820 * 69.99814 * 17 16 15 39 39 H 1.08998 * 109.47347 * 185.00232 * 18 17 16 40 40 H 1.09001 * 109.47425 * 305.00751 * 18 17 16 41 41 H 1.08999 * 109.46659 * 59.99946 * 20 19 18 42 42 H 1.08994 * 109.46913 * 179.97438 * 20 19 18 43 43 H 1.09001 * 109.46869 * 300.00219 * 20 19 18 44 44 H 1.09004 * 109.47135 * 195.68354 * 21 16 15 45 45 H 1.08994 * 109.47610 * 315.68485 * 21 16 15 46 46 H 1.07991 * 122.75230 * 359.97438 * 23 22 21 47 47 H 1.08003 * 124.91480 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7037 6 1 4.3428 1.2310 -1.0957 7 6 4.1491 2.3898 -2.8779 8 7 3.3488 3.1250 -3.6185 9 14 5.9135 2.0968 -3.4167 10 1 6.1417 0.6402 -3.5934 11 1 6.1606 2.7958 -4.7035 12 1 6.8405 2.6212 -2.3820 13 6 2.2428 2.0167 1.1672 14 8 2.6466 3.1603 1.1672 15 6 1.9921 1.3060 2.4723 16 7 2.1862 2.2443 3.5859 17 6 1.0445 3.1607 3.7072 18 6 1.3856 4.2715 4.7025 19 8 2.4539 5.0655 4.1824 20 6 2.8525 6.1369 5.0398 21 6 2.4204 1.5254 4.8453 22 6 3.8269 0.9844 4.8608 23 6 4.9226 1.6537 5.2314 24 7 6.0395 0.9582 5.1558 25 6 5.9467 -0.2605 4.7426 26 16 4.3161 -0.6448 4.4013 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.5817 1.6878 -2.0283 33 1 2.0955 3.1411 -1.1384 34 1 3.6746 3.5149 -4.4447 35 1 2.6891 0.4740 2.5727 36 1 0.9699 0.9281 2.4897 37 1 0.8258 3.5995 2.7338 38 1 0.1730 2.6103 4.0617 39 1 0.5092 4.9001 4.8599 40 1 1.6904 3.8288 5.6508 41 1 3.1878 5.7325 5.9948 42 1 3.6675 6.6909 4.5740 43 1 2.0066 6.8043 5.2047 44 1 2.2844 2.2081 5.6841 45 1 1.7130 0.7005 4.9298 46 1 4.8953 2.6806 5.5646 47 1 6.7781 -0.9411 4.6332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447835976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:49 Heat of formation + Delta-G solvation = -11.995042 kcal Electronic energy + Delta-G solvation = -28710.651516 eV Core-core repulsion = 24828.662979 eV Total energy + Delta-G solvation = -3881.988537 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.79276 -39.17723 -37.98096 -36.56219 -35.05787 -32.74212 -31.67042 -30.25205 -29.96223 -27.96731 -26.76252 -26.25798 -25.12356 -23.81380 -22.95063 -22.40047 -21.17365 -19.94564 -18.31566 -18.10439 -16.71265 -16.53960 -16.32685 -16.16512 -15.69975 -15.44456 -15.23070 -14.51127 -14.38186 -14.29942 -14.07718 -13.94720 -13.84124 -13.56242 -13.28488 -12.80175 -12.70225 -12.53237 -12.29359 -12.04968 -11.92507 -11.61133 -11.59587 -11.31878 -11.17486 -11.09409 -10.87825 -10.77650 -10.65879 -10.44934 -10.04788 -9.68978 -9.56222 -9.52458 -9.29594 -8.95522 -8.77482 -8.35560 -8.15487 -7.53122 -5.96705 -4.00620 0.68095 1.32515 1.69931 2.86032 3.37086 3.41379 3.45093 3.58963 3.66435 3.91283 4.21031 4.34494 4.52314 4.71311 4.87735 4.98962 5.05169 5.12398 5.25146 5.26263 5.27027 5.34218 5.37465 5.41062 5.44286 5.48714 5.52018 5.58442 5.67747 5.74039 5.77544 5.79913 5.98003 6.04587 6.16844 6.26244 6.49136 6.86994 6.98494 7.20091 7.38030 7.53907 7.66927 7.70135 8.00821 8.32812 8.55504 9.00040 9.28244 9.64494 11.11288 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008466 B = 0.004043 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3306.490383 B = 6923.713176 C = 7638.735267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.108 3.892 3 N -0.603 5.603 4 C 0.250 3.750 5 C -0.523 4.523 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.504 3.496 14 O -0.507 6.507 15 C 0.034 3.966 16 N -0.503 5.503 17 C 0.059 3.941 18 C 0.068 3.932 19 O -0.356 6.356 20 C 0.030 3.970 21 C 0.129 3.871 22 C -0.204 4.204 23 C 0.056 3.944 24 N -0.470 5.470 25 C 0.019 3.981 26 S 0.106 5.894 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.030 0.970 33 H 0.042 0.958 34 H 0.263 0.737 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.044 0.956 41 H 0.034 0.966 42 H 0.084 0.916 43 H 0.034 0.966 44 H 0.098 0.902 45 H 0.047 0.953 46 H 0.175 0.825 47 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.336 -7.133 20.693 22.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.337 5.337 4 C 0.131 3.869 5 C -0.561 4.561 6 H 0.073 0.927 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.288 3.712 14 O -0.381 6.381 15 C -0.097 4.097 16 N -0.228 5.228 17 C -0.069 4.069 18 C -0.010 4.010 19 O -0.274 6.274 20 C -0.067 4.067 21 C -0.001 4.001 22 C -0.325 4.325 23 C -0.095 4.095 24 N -0.183 5.183 25 C -0.278 4.278 26 S 0.358 5.642 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.103 0.897 43 H 0.052 0.948 44 H 0.116 0.884 45 H 0.065 0.935 46 H 0.192 0.808 47 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -5.559 -6.834 20.007 21.861 hybrid contribution 0.311 0.170 0.198 0.406 sum -5.247 -6.664 20.205 21.913 Atomic orbital electron populations 1.22226 0.97022 1.01243 1.02171 1.21362 0.93303 0.84617 1.02421 1.48263 1.64664 1.13095 1.07692 1.19198 0.96054 0.93569 0.78093 1.21408 0.97001 1.31704 1.06031 0.92654 1.24910 0.97677 0.94983 0.96452 1.69921 1.35655 1.33633 1.14346 0.86601 0.85122 0.78173 0.77791 1.20319 1.21214 1.20183 1.20058 0.79346 0.87324 0.84444 1.90728 1.43434 1.17390 1.86550 1.22179 1.00817 0.95275 0.91427 1.61428 1.41500 1.18053 1.01797 1.22185 0.90127 0.92635 1.01903 1.22537 0.90181 0.92471 0.95789 1.88236 1.52572 1.42880 1.43730 1.22719 0.99592 0.89993 0.94395 1.20483 0.89145 0.96751 0.93730 1.25807 1.01268 0.96163 1.09265 1.21680 0.85457 1.01014 1.01383 1.66321 1.30773 1.05319 1.15929 1.28325 1.00014 0.96626 1.02877 1.83930 1.05222 1.12965 1.62100 0.93357 0.91987 0.92292 0.90005 0.92199 0.95241 0.93998 0.92778 0.88934 0.92464 0.88494 0.93627 0.93268 0.93771 0.94729 0.89720 0.94750 0.88436 0.93451 0.80837 0.78647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.19 37.15 0.38 -1.84 16 2 C 0.11 1.73 5.86 -4.04 -0.02 1.71 16 3 N -0.60 -12.90 2.46 -175.06 -0.43 -13.33 16 4 C 0.25 6.65 5.16 -5.19 -0.03 6.62 16 5 C -0.52 -15.20 9.39 -34.44 -0.32 -15.52 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 8 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 9 Si 0.90 22.56 29.54 -169.99 -5.02 17.54 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.50 10.71 7.23 -10.98 -0.08 10.63 16 14 O -0.51 -13.26 15.10 5.56 0.08 -13.18 16 15 C 0.03 0.53 3.77 -4.97 -0.02 0.51 16 16 N -0.50 -7.32 3.90 -237.52 -0.93 -8.24 16 17 C 0.06 0.77 4.99 -3.83 -0.02 0.75 16 18 C 0.07 0.79 6.02 37.16 0.22 1.01 16 19 O -0.36 -5.54 10.65 -35.23 -0.38 -5.92 16 20 C 0.03 0.34 11.01 101.05 1.11 1.45 16 21 C 0.13 1.42 5.37 -4.98 -0.03 1.39 16 22 C -0.20 -2.53 5.54 -35.92 -0.20 -2.73 16 23 C 0.06 0.76 11.25 -19.18 -0.22 0.55 16 24 N -0.47 -6.72 10.54 -15.75 -0.17 -6.89 16 25 C 0.02 0.23 12.23 51.58 0.63 0.86 16 26 S 0.11 1.16 22.10 -107.50 -2.38 -1.21 16 27 H 0.05 0.60 7.13 -51.93 -0.37 0.23 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 31 H 0.06 0.81 6.59 -51.93 -0.34 0.47 16 32 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.09 1.37 5.80 -51.93 -0.30 1.07 16 36 H 0.06 0.73 6.75 -51.93 -0.35 0.38 16 37 H 0.10 1.59 6.90 -51.93 -0.36 1.24 16 38 H 0.05 0.45 8.12 -51.93 -0.42 0.03 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.04 0.42 6.08 -51.93 -0.32 0.11 16 41 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.10 0.91 5.82 -51.93 -0.30 0.60 16 45 H 0.05 0.43 8.00 -51.93 -0.42 0.02 16 46 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 47 H 0.20 1.64 8.06 -52.48 -0.42 1.21 16 LS Contribution 398.19 15.07 6.00 6.00 Total: -1.00 -36.91 398.19 -8.49 -45.40 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -7.33 Total: -0.81 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 1.32 Total: 7.10 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.79 Total: -54.91 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.29 Total: -19.09 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.38 Total: -1.21 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.91 -8.49 -45.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447835976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.405 kcal (2) G-P(sol) polarization free energy of solvation -36.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds