Wall clock time and date at job start Wed Apr 1 2020 01:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47042 * 2 1 4 4 C 1.46499 * 120.00184 * 270.00045 * 3 2 1 5 5 C 1.50698 * 109.47085 * 270.00052 * 4 3 2 6 6 H 1.08008 * 119.99918 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00285 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99857 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47058 * 60.00036 * 9 7 5 11 11 H 1.48507 * 109.46785 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46915 * 299.99715 * 9 7 5 13 13 C 1.34777 * 119.99966 * 89.99637 * 3 2 1 14 14 O 1.21280 * 119.99934 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99985 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47091 * 185.36906 * 15 13 3 17 17 C 1.46900 * 111.00122 * 76.01102 * 16 15 13 18 18 C 1.52995 * 109.47323 * 189.99863 * 17 16 15 19 19 O 1.42899 * 109.47167 * 65.00387 * 18 17 16 20 20 C 1.42901 * 114.00435 * 180.02562 * 19 18 17 21 21 C 1.46894 * 110.99878 * 199.96752 * 16 15 13 22 22 C 1.50700 * 109.47166 * 75.68647 * 21 16 15 23 23 C 1.33640 * 126.03841 * 84.52212 * 22 21 16 24 24 N 1.31789 * 114.49802 * 180.02562 * 23 22 21 25 25 C 1.29021 * 117.12451 * 359.97438 * 24 23 22 26 26 S 1.70972 * 110.16943 * 359.72119 * 25 24 23 27 27 H 1.08999 * 109.47576 * 300.00032 * 1 2 3 28 28 H 1.09002 * 109.47503 * 59.99944 * 1 2 3 29 29 H 1.09004 * 109.46927 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47576 * 239.99968 * 2 1 3 31 31 H 1.08999 * 109.47166 * 119.99378 * 2 1 3 32 32 H 1.08998 * 109.46815 * 29.99638 * 4 3 2 33 33 H 1.08998 * 109.47338 * 149.99972 * 4 3 2 34 34 H 0.96994 * 120.00000 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.46930 * 65.37261 * 15 13 3 36 36 H 1.09001 * 109.47030 * 305.36502 * 15 13 3 37 37 H 1.08999 * 109.47145 * 310.00286 * 17 16 15 38 38 H 1.09003 * 109.46820 * 69.99814 * 17 16 15 39 39 H 1.08998 * 109.47347 * 185.00232 * 18 17 16 40 40 H 1.09001 * 109.47425 * 305.00751 * 18 17 16 41 41 H 1.08999 * 109.46659 * 59.99946 * 20 19 18 42 42 H 1.08994 * 109.46913 * 179.97438 * 20 19 18 43 43 H 1.09001 * 109.46869 * 300.00219 * 20 19 18 44 44 H 1.09004 * 109.47135 * 195.68354 * 21 16 15 45 45 H 1.08994 * 109.47610 * 315.68485 * 21 16 15 46 46 H 1.07991 * 122.75230 * 359.97438 * 23 22 21 47 47 H 1.08003 * 124.91480 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7037 6 1 4.3428 1.2310 -1.0957 7 6 4.1491 2.3898 -2.8779 8 7 3.3488 3.1250 -3.6185 9 14 5.9135 2.0968 -3.4167 10 1 6.1417 0.6402 -3.5934 11 1 6.1606 2.7958 -4.7035 12 1 6.8405 2.6212 -2.3820 13 6 2.2428 2.0167 1.1672 14 8 2.6466 3.1603 1.1672 15 6 1.9921 1.3060 2.4723 16 7 2.1862 2.2443 3.5859 17 6 1.0445 3.1607 3.7072 18 6 1.3856 4.2715 4.7025 19 8 2.4539 5.0655 4.1824 20 6 2.8525 6.1369 5.0398 21 6 2.4204 1.5254 4.8453 22 6 3.8269 0.9844 4.8608 23 6 4.9226 1.6537 5.2314 24 7 6.0395 0.9582 5.1558 25 6 5.9467 -0.2605 4.7426 26 16 4.3161 -0.6448 4.4013 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.5817 1.6878 -2.0283 33 1 2.0955 3.1411 -1.1384 34 1 3.6746 3.5149 -4.4447 35 1 2.6891 0.4740 2.5727 36 1 0.9699 0.9281 2.4897 37 1 0.8258 3.5995 2.7338 38 1 0.1730 2.6103 4.0617 39 1 0.5092 4.9001 4.8599 40 1 1.6904 3.8288 5.6508 41 1 3.1878 5.7325 5.9948 42 1 3.6675 6.6909 4.5740 43 1 2.0066 6.8043 5.2047 44 1 2.2844 2.2081 5.6841 45 1 1.7130 0.7005 4.9298 46 1 4.8953 2.6806 5.5646 47 1 6.7781 -0.9411 4.6332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447835976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:48 Heat of formation + Delta-G solvation = -39.491157 kcal Electronic energy + Delta-G solvation = -28711.843837 eV Core-core repulsion = 24828.662979 eV Total energy + Delta-G solvation = -3883.180858 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.96667 -40.43074 -39.10299 -37.66915 -36.73802 -34.89562 -32.60083 -31.71330 -31.18870 -29.40153 -28.14950 -27.28890 -26.29612 -24.95887 -24.48576 -23.89465 -22.20024 -20.92984 -19.81582 -19.06155 -18.60410 -17.93996 -17.59981 -17.35948 -16.93475 -16.78165 -16.34728 -16.16719 -15.71299 -15.43842 -15.17931 -15.04679 -14.82542 -14.70122 -14.60359 -14.33244 -14.02290 -13.67277 -13.56259 -13.33394 -13.21019 -13.13279 -13.00952 -12.64759 -12.54411 -12.49015 -12.38622 -12.16230 -12.10078 -11.87084 -11.70914 -11.67092 -10.63635 -10.61935 -10.51101 -10.41811 -10.20138 -9.81793 -9.36714 -9.17218 -8.21192 -6.35544 -0.21951 0.46807 0.79706 1.33590 1.38831 1.45602 1.89234 1.97225 2.28733 2.42386 2.96672 3.07001 3.07901 3.49912 3.72336 3.85066 4.07508 4.11658 4.15691 4.16640 4.29356 4.33113 4.41496 4.45040 4.47898 4.52577 4.56879 4.63544 4.65439 4.71032 4.83120 4.89087 4.95051 4.99848 5.01887 5.07958 5.22476 5.24678 5.40486 5.60280 5.85704 5.96038 6.06529 6.10184 6.50339 6.72862 6.79227 6.91100 7.31122 7.65302 8.85292 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008466 B = 0.004043 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3306.490383 B = 6923.713176 C = 7638.735267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.609 5.609 4 C 0.268 3.732 5 C -0.539 4.539 6 H 0.049 0.951 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.962 3.038 10 H -0.257 1.257 11 H -0.276 1.276 12 H -0.283 1.283 13 C 0.493 3.507 14 O -0.569 6.569 15 C 0.053 3.947 16 N -0.534 5.534 17 C 0.060 3.940 18 C 0.065 3.935 19 O -0.406 6.406 20 C 0.028 3.972 21 C 0.132 3.868 22 C -0.214 4.214 23 C 0.034 3.966 24 N -0.507 5.507 25 C 0.010 3.990 26 S 0.148 5.852 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.021 0.979 33 H -0.008 1.008 34 H 0.266 0.734 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.050 0.950 44 H 0.115 0.885 45 H 0.078 0.922 46 H 0.171 0.829 47 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.962 -9.909 22.608 25.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.023 4.023 3 N -0.342 5.342 4 C 0.146 3.854 5 C -0.578 4.578 6 H 0.067 0.933 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.787 3.213 10 H -0.182 1.182 11 H -0.201 1.201 12 H -0.209 1.209 13 C 0.281 3.719 14 O -0.448 6.448 15 C -0.078 4.078 16 N -0.259 5.259 17 C -0.067 4.067 18 C -0.012 4.012 19 O -0.325 6.325 20 C -0.069 4.069 21 C 0.003 3.997 22 C -0.336 4.336 23 C -0.117 4.117 24 N -0.221 5.221 25 C -0.287 4.287 26 S 0.400 5.600 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.039 0.961 33 H 0.010 0.990 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.133 0.867 45 H 0.096 0.904 46 H 0.188 0.812 47 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -6.218 -9.671 21.946 24.775 hybrid contribution 0.484 1.030 -0.392 1.203 sum -5.734 -8.641 21.554 23.919 Atomic orbital electron populations 1.22148 0.94443 1.03504 1.01627 1.21709 0.95399 0.81542 1.03606 1.48301 1.64740 1.15052 1.06140 1.18590 0.94955 0.91291 0.80561 1.21675 0.98022 1.31833 1.06286 0.93312 1.25814 1.02152 0.94546 0.96501 1.70041 1.37692 1.34301 1.14768 0.85551 0.79294 0.79178 0.77295 1.18177 1.20094 1.20913 1.21210 0.77680 0.86857 0.86153 1.90695 1.46134 1.20320 1.87603 1.21994 1.02930 0.94601 0.88312 1.61242 1.42908 1.18780 1.02937 1.22189 0.91179 0.93135 1.00175 1.22725 0.90061 0.92191 0.96196 1.88174 1.54047 1.44304 1.45972 1.22815 0.99969 0.89554 0.94545 1.20601 0.88789 0.97894 0.92368 1.26086 1.01721 0.97093 1.08714 1.21781 0.86097 1.01315 1.02539 1.66322 1.31615 1.06601 1.17563 1.28858 1.01675 0.96337 1.01852 1.83684 1.03990 1.11398 1.60964 0.92112 0.94388 0.88502 0.91162 0.88640 0.96144 0.99011 0.92468 0.87952 0.88902 0.92960 0.89647 0.91445 0.91137 0.92736 0.90825 0.93130 0.86679 0.90390 0.81241 0.76034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 10.19 71.98 0.73 -3.08 16 2 C 0.10 3.05 5.86 86.38 0.51 3.56 16 3 N -0.61 -26.52 2.46 -826.15 -2.03 -28.55 16 4 C 0.27 14.99 5.16 85.63 0.44 15.43 16 5 C -0.54 -32.41 9.39 25.60 0.24 -32.17 16 6 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 7 C 0.01 0.52 5.46 84.65 0.46 0.98 16 8 N -0.93 -57.99 13.29 21.45 0.28 -57.71 16 9 Si 0.96 46.83 29.54 68.60 2.03 48.85 16 10 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 13 C 0.49 21.32 7.23 87.66 0.63 21.95 16 14 O -0.57 -31.45 15.10 -3.03 -0.05 -31.49 16 15 C 0.05 1.51 3.77 85.56 0.32 1.83 16 16 N -0.53 -14.57 3.90 -905.38 -3.53 -18.10 16 17 C 0.06 1.49 4.99 86.30 0.43 1.92 16 18 C 0.06 1.42 6.02 71.98 0.43 1.85 16 19 O -0.41 -12.81 10.65 -148.98 -1.59 -14.40 16 20 C 0.03 0.62 11.01 113.37 1.25 1.87 16 21 C 0.13 2.48 5.37 85.56 0.46 2.94 16 22 C -0.21 -4.87 5.54 24.64 0.14 -4.73 16 23 C 0.03 0.90 11.25 83.66 0.94 1.84 16 24 N -0.51 -14.21 10.54 -203.75 -2.15 -16.36 16 25 C 0.01 0.21 12.23 130.66 1.60 1.81 16 26 S 0.15 2.81 22.10 -56.49 -1.25 1.56 16 27 H 0.06 1.31 7.13 -2.39 -0.02 1.29 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 31 H 0.10 2.24 6.59 -2.39 -0.02 2.23 16 32 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 33 H -0.01 -0.54 7.42 -2.39 -0.02 -0.56 16 34 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 35 H 0.10 2.71 5.80 -2.39 -0.01 2.70 16 36 H 0.09 1.99 6.75 -2.39 -0.02 1.97 16 37 H 0.05 1.76 6.90 -2.39 -0.02 1.75 16 38 H 0.09 1.37 8.12 -2.39 -0.02 1.35 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.14 6.08 -2.39 -0.01 1.13 16 41 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.12 1.73 5.82 -2.38 -0.01 1.72 16 45 H 0.08 1.01 8.00 -2.39 -0.02 0.99 16 46 H 0.17 4.40 8.06 -2.92 -0.02 4.38 16 47 H 0.22 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -87.07 398.19 1.27 -85.79 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.96 Total: 14.38 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 8.59 Total: 16.00 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -7.42 Total: -120.71 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -1.63 Total: -45.89 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.85 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.25 Total: 1.56 kcal Total: -87.07 1.27 -85.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447835976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.303 kcal (2) G-P(sol) polarization free energy of solvation -87.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds