Wall clock time and date at job start Wed Apr 1 2020 01:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47051 * 2 1 4 4 C 1.46499 * 119.99406 * 274.99697 * 3 2 1 5 5 C 1.50706 * 109.47338 * 279.84036 * 4 3 2 6 6 H 1.07995 * 119.99624 * 5.18551 * 5 4 3 7 7 C 1.37871 * 120.00025 * 185.18668 * 5 4 3 8 8 N 1.31516 * 120.00233 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00016 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46800 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47018 * 119.99242 * 9 7 5 12 12 H 1.48494 * 109.46992 * 239.99604 * 9 7 5 13 13 S 1.65594 * 120.00180 * 95.00317 * 3 2 1 14 14 O 1.42105 * 106.40260 * 330.16087 * 13 3 2 15 15 O 1.42099 * 106.40099 * 197.24734 * 13 3 2 16 16 N 1.65599 * 107.22176 * 83.70398 * 13 3 2 17 17 C 1.46496 * 119.99914 * 66.49769 * 16 13 3 18 18 C 1.53003 * 109.47323 * 165.56850 * 17 16 13 19 19 C 1.53003 * 109.46922 * 59.99672 * 18 17 16 20 20 C 1.53001 * 109.46785 * 300.00372 * 18 17 16 21 21 C 1.50694 * 109.47169 * 180.02562 * 18 17 16 22 22 C 1.38233 * 119.61801 * 165.02260 * 21 18 17 23 23 C 1.38622 * 119.16224 * 179.70181 * 22 21 18 24 24 C 1.38672 * 118.41946 * 0.51105 * 23 22 21 25 25 C 1.38181 * 119.16142 * 359.50831 * 24 23 22 26 26 N 1.31854 * 119.62114 * 344.99506 * 21 18 17 27 27 H 1.09004 * 109.47080 * 300.00596 * 1 2 3 28 28 H 1.08999 * 109.47170 * 60.00239 * 1 2 3 29 29 H 1.08997 * 109.47018 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47069 * 239.99760 * 2 1 3 31 31 H 1.09004 * 109.46719 * 119.99777 * 2 1 3 32 32 H 1.08999 * 109.47479 * 39.84646 * 4 3 2 33 33 H 1.09002 * 109.46757 * 159.84705 * 4 3 2 34 34 H 0.97000 * 120.00010 * 179.97438 * 8 7 5 35 35 H 0.96997 * 120.00106 * 246.49759 * 16 13 3 36 36 H 1.09004 * 109.46953 * 45.57081 * 17 16 13 37 37 H 1.08996 * 109.47553 * 285.56860 * 17 16 13 38 38 H 1.08995 * 109.47133 * 180.02562 * 19 18 17 39 39 H 1.08993 * 109.47298 * 300.00473 * 19 18 17 40 40 H 1.09001 * 109.46494 * 60.00363 * 19 18 17 41 41 H 1.09004 * 109.47259 * 299.99627 * 20 18 17 42 42 H 1.08993 * 109.47388 * 59.99556 * 20 18 17 43 43 H 1.09005 * 109.46975 * 179.97438 * 20 18 17 44 44 H 1.08006 * 120.41758 * 359.95156 * 22 21 18 45 45 H 1.08000 * 120.79324 * 180.27373 * 23 22 21 46 46 H 1.08007 * 120.41886 * 179.78689 * 24 23 22 47 47 H 1.08008 * 119.61261 * 180.25186 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2640 5 6 3.4411 1.6984 -1.9403 6 1 4.0456 0.9093 -1.5182 7 6 3.8428 2.3305 -3.0978 8 7 3.1064 3.2912 -3.6121 9 14 5.4325 1.8216 -3.9366 10 1 6.0708 0.7257 -3.1640 11 1 5.1368 1.3502 -5.3134 12 1 6.3537 2.9846 -3.9986 13 16 2.4123 2.1202 1.4286 14 8 1.5780 1.5418 2.4230 15 8 2.4504 3.5154 1.1615 16 7 3.9626 1.6728 1.8009 17 6 5.0753 2.1148 0.9566 18 6 6.3968 1.8844 1.6926 19 6 6.5537 0.3948 2.0046 20 6 6.3991 2.6819 2.9983 21 6 7.5412 2.3397 0.8244 22 6 8.7926 2.5209 1.3831 23 6 9.8400 2.9339 0.5745 24 6 9.5863 3.1606 -0.7698 25 6 8.3092 2.9588 -1.2573 26 7 7.3377 2.5601 -0.4596 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.3144 1.8748 -1.9131 33 1 2.1786 3.1803 -1.0661 34 1 3.3892 3.7361 -4.4263 35 1 4.1340 1.1181 2.5779 36 1 4.9634 3.1761 0.7344 37 1 5.0736 1.5467 0.0264 38 1 7.4949 0.2306 2.5292 39 1 5.7259 0.0659 2.6326 40 1 6.5520 -0.1733 1.0743 41 1 6.2872 3.7432 2.7761 42 1 5.5712 2.3530 3.6264 43 1 7.3403 2.5174 3.5228 44 1 8.9530 2.3390 2.4356 45 1 10.8293 3.0794 0.9825 46 1 10.3779 3.4864 -1.4284 47 1 8.1043 3.1292 -2.3040 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451674007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:36 Heat of formation + Delta-G solvation = -48.242193 kcal Electronic energy + Delta-G solvation = -29809.547800 eV Core-core repulsion = 25925.987468 eV Total energy + Delta-G solvation = -3883.560332 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.41757 -37.29692 -36.51124 -35.92771 -35.09619 -32.99161 -32.58705 -32.39929 -29.90497 -29.82973 -27.26955 -26.55810 -25.88698 -23.43909 -23.06682 -23.00527 -21.59436 -19.49996 -18.82306 -17.29884 -16.76204 -16.64032 -16.38493 -16.03033 -15.43841 -15.22083 -14.84936 -14.64238 -14.23317 -14.04226 -13.73366 -13.44431 -13.28170 -13.17709 -13.01338 -12.80861 -12.33637 -12.15026 -11.97000 -11.92908 -11.77987 -11.61922 -11.57475 -11.30246 -11.18982 -11.05342 -11.03248 -10.93517 -10.81454 -10.61220 -10.43256 -10.26086 -9.92241 -9.79594 -9.66109 -9.19406 -8.89741 -8.76656 -8.38139 -7.95350 -5.99611 -4.04501 1.17689 1.37368 1.41718 3.31798 3.38019 3.46231 3.65202 3.89727 4.23735 4.30690 4.48258 4.63239 4.89864 4.97307 5.07109 5.11594 5.17846 5.21582 5.24131 5.35622 5.48458 5.60373 5.65221 5.71370 5.80442 5.82112 5.84466 5.88326 5.93429 6.05835 6.11986 6.16782 6.20968 6.26151 6.31415 6.39045 6.50975 6.73953 6.76344 6.78920 6.83269 7.38534 7.49324 7.56862 7.79495 7.97675 8.20180 8.27047 8.99434 9.61589 11.08518 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010009 B = 0.005876 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.785873 B = 4763.779196 C = 6771.357253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.991 5.991 4 C 0.243 3.757 5 C -0.528 4.528 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.891 5.891 9 Si 0.893 3.107 10 H -0.269 1.269 11 H -0.292 1.292 12 H -0.283 1.283 13 S 2.785 3.215 14 O -1.004 7.004 15 O -0.979 6.979 16 N -1.132 6.132 17 C 0.140 3.860 18 C -0.023 4.023 19 C -0.136 4.136 20 C -0.141 4.141 21 C 0.147 3.853 22 C -0.171 4.171 23 C -0.078 4.078 24 C -0.183 4.183 25 C 0.106 3.894 26 N -0.459 5.459 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.032 0.968 33 H 0.055 0.945 34 H 0.261 0.739 35 H 0.403 0.597 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.132 0.868 45 H 0.130 0.870 46 H 0.131 0.869 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.820 -4.745 10.188 15.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.833 5.833 4 C 0.121 3.879 5 C -0.568 4.568 6 H 0.082 0.918 7 C -0.134 4.134 8 N -0.530 5.530 9 Si 0.722 3.278 10 H -0.193 1.193 11 H -0.219 1.219 12 H -0.209 1.209 13 S 2.793 3.207 14 O -0.988 6.988 15 O -0.962 6.962 16 N -0.892 5.892 17 C 0.014 3.986 18 C -0.026 4.026 19 C -0.194 4.194 20 C -0.198 4.198 21 C 0.008 3.992 22 C -0.191 4.191 23 C -0.104 4.104 24 C -0.203 4.203 25 C -0.051 4.051 26 N -0.166 5.166 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.236 0.764 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.150 0.850 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.374 -4.020 10.010 14.291 hybrid contribution 2.229 -0.512 -0.321 2.310 sum 11.604 -4.532 9.688 15.781 Atomic orbital electron populations 1.22216 0.97064 1.01230 1.02462 1.20927 0.93545 0.83023 1.01899 1.57721 1.78613 1.22834 1.24138 1.19230 0.97228 0.92596 0.78875 1.21507 1.06732 1.19660 1.08878 0.91752 1.24878 0.96796 0.94661 0.97062 1.69955 1.38062 1.23812 1.21162 0.86521 0.83995 0.78655 0.78645 1.19342 1.21887 1.20929 1.01697 0.72588 0.73741 0.72637 1.93540 1.65697 1.79855 1.59721 1.93574 1.86551 1.30945 1.85163 1.56079 1.25342 1.68661 1.39116 1.21299 0.82326 1.01823 0.93107 1.19697 0.92657 0.96168 0.94046 1.21855 1.01597 0.93706 1.02202 1.21942 1.01827 1.00482 0.95585 1.21085 0.93279 0.94159 0.90694 1.21870 0.93622 1.02517 1.01097 1.21488 0.99041 0.96197 0.93690 1.22127 0.98736 1.02953 0.96442 1.22891 0.88556 0.93729 0.99957 1.67639 1.34637 1.10193 1.04177 0.92524 0.92118 0.92538 0.90217 0.92308 0.94987 0.92660 0.92909 0.76432 0.90225 0.88220 0.92554 0.91691 0.91819 0.91995 0.91545 0.92436 0.85017 0.85211 0.85108 0.82994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 10.24 37.16 0.38 -2.38 16 2 C 0.13 2.33 6.03 -4.04 -0.02 2.31 16 3 N -0.99 -20.63 2.84 -115.66 -0.33 -20.96 16 4 C 0.24 6.06 5.46 -5.19 -0.03 6.04 16 5 C -0.53 -13.72 8.48 -34.44 -0.29 -14.02 16 6 H 0.06 1.62 6.57 -52.49 -0.34 1.28 16 7 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 8 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 S 2.79 56.21 6.08 -107.50 -0.65 55.55 16 14 O -1.00 -20.65 17.17 -57.17 -0.98 -21.63 16 15 O -0.98 -23.47 15.97 -57.17 -0.91 -24.39 16 16 N -1.13 -18.60 5.39 -10.61 -0.06 -18.65 16 17 C 0.14 2.48 4.45 -4.04 -0.02 2.46 16 18 C -0.02 -0.32 0.64 -155.66 -0.10 -0.42 16 19 C -0.14 -1.57 8.24 37.16 0.31 -1.27 16 20 C -0.14 -1.63 7.92 37.16 0.29 -1.34 16 21 C 0.15 2.16 5.56 -82.59 -0.46 1.70 16 22 C -0.17 -2.00 9.08 -39.44 -0.36 -2.35 16 23 C -0.08 -0.83 10.18 -39.28 -0.40 -1.23 16 24 C -0.18 -2.17 10.11 -39.44 -0.40 -2.57 16 25 C 0.11 1.63 11.18 -17.55 -0.20 1.43 16 26 N -0.46 -8.06 9.03 -9.47 -0.09 -8.14 16 27 H 0.06 0.95 7.97 -51.93 -0.41 0.54 16 28 H 0.06 1.02 8.11 -51.93 -0.42 0.60 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 31 H 0.06 0.91 7.78 -51.93 -0.40 0.50 16 32 H 0.03 0.83 8.10 -51.93 -0.42 0.41 16 33 H 0.06 1.55 6.78 -51.93 -0.35 1.20 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 35 H 0.40 5.32 6.46 -34.47 -0.22 5.10 16 36 H 0.08 1.63 7.73 -51.93 -0.40 1.23 16 37 H 0.10 2.01 5.62 -51.93 -0.29 1.71 16 38 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 39 H 0.06 0.66 6.61 -51.93 -0.34 0.32 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.72 7.18 -51.93 -0.37 0.35 16 43 H 0.06 0.52 6.70 -51.93 -0.35 0.17 16 44 H 0.13 1.19 6.73 -52.48 -0.35 0.84 16 45 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 47 H 0.15 2.33 8.06 -52.48 -0.42 1.91 16 LS Contribution 389.07 15.07 5.86 5.86 Total: -1.00 -33.06 389.07 -10.03 -43.09 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -7.20 Total: 8.07 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -1.39 Total: -9.86 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: 0.27 Total: -72.73 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -1.89 Total: -46.01 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 56.21 SS G_CDS: -0.65 Total: 55.55 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.06 -10.03 -43.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451674007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.149 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds