Wall clock time and date at job start Wed Apr 1 2020 01:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47051 * 2 1 4 4 C 1.46499 * 119.99406 * 274.99697 * 3 2 1 5 5 C 1.50706 * 109.47338 * 279.84036 * 4 3 2 6 6 H 1.07995 * 119.99624 * 5.18551 * 5 4 3 7 7 C 1.37871 * 120.00025 * 185.18668 * 5 4 3 8 8 N 1.31516 * 120.00233 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00016 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46800 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47018 * 119.99242 * 9 7 5 12 12 H 1.48494 * 109.46992 * 239.99604 * 9 7 5 13 13 S 1.65594 * 120.00180 * 95.00317 * 3 2 1 14 14 O 1.42105 * 106.40260 * 330.16087 * 13 3 2 15 15 O 1.42099 * 106.40099 * 197.24734 * 13 3 2 16 16 N 1.65599 * 107.22176 * 83.70398 * 13 3 2 17 17 C 1.46496 * 119.99914 * 66.49769 * 16 13 3 18 18 C 1.53003 * 109.47323 * 165.56850 * 17 16 13 19 19 C 1.53003 * 109.46922 * 59.99672 * 18 17 16 20 20 C 1.53001 * 109.46785 * 300.00372 * 18 17 16 21 21 C 1.50694 * 109.47169 * 180.02562 * 18 17 16 22 22 C 1.38233 * 119.61801 * 165.02260 * 21 18 17 23 23 C 1.38622 * 119.16224 * 179.70181 * 22 21 18 24 24 C 1.38672 * 118.41946 * 0.51105 * 23 22 21 25 25 C 1.38181 * 119.16142 * 359.50831 * 24 23 22 26 26 N 1.31854 * 119.62114 * 344.99506 * 21 18 17 27 27 H 1.09004 * 109.47080 * 300.00596 * 1 2 3 28 28 H 1.08999 * 109.47170 * 60.00239 * 1 2 3 29 29 H 1.08997 * 109.47018 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47069 * 239.99760 * 2 1 3 31 31 H 1.09004 * 109.46719 * 119.99777 * 2 1 3 32 32 H 1.08999 * 109.47479 * 39.84646 * 4 3 2 33 33 H 1.09002 * 109.46757 * 159.84705 * 4 3 2 34 34 H 0.97000 * 120.00010 * 179.97438 * 8 7 5 35 35 H 0.96997 * 120.00106 * 246.49759 * 16 13 3 36 36 H 1.09004 * 109.46953 * 45.57081 * 17 16 13 37 37 H 1.08996 * 109.47553 * 285.56860 * 17 16 13 38 38 H 1.08995 * 109.47133 * 180.02562 * 19 18 17 39 39 H 1.08993 * 109.47298 * 300.00473 * 19 18 17 40 40 H 1.09001 * 109.46494 * 60.00363 * 19 18 17 41 41 H 1.09004 * 109.47259 * 299.99627 * 20 18 17 42 42 H 1.08993 * 109.47388 * 59.99556 * 20 18 17 43 43 H 1.09005 * 109.46975 * 179.97438 * 20 18 17 44 44 H 1.08006 * 120.41758 * 359.95156 * 22 21 18 45 45 H 1.08000 * 120.79324 * 180.27373 * 23 22 21 46 46 H 1.08007 * 120.41886 * 179.78689 * 24 23 22 47 47 H 1.08008 * 119.61261 * 180.25186 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2640 5 6 3.4411 1.6984 -1.9403 6 1 4.0456 0.9093 -1.5182 7 6 3.8428 2.3305 -3.0978 8 7 3.1064 3.2912 -3.6121 9 14 5.4325 1.8216 -3.9366 10 1 6.0708 0.7257 -3.1640 11 1 5.1368 1.3502 -5.3134 12 1 6.3537 2.9846 -3.9986 13 16 2.4123 2.1202 1.4286 14 8 1.5780 1.5418 2.4230 15 8 2.4504 3.5154 1.1615 16 7 3.9626 1.6728 1.8009 17 6 5.0753 2.1148 0.9566 18 6 6.3968 1.8844 1.6926 19 6 6.5537 0.3948 2.0046 20 6 6.3991 2.6819 2.9983 21 6 7.5412 2.3397 0.8244 22 6 8.7926 2.5209 1.3831 23 6 9.8400 2.9339 0.5745 24 6 9.5863 3.1606 -0.7698 25 6 8.3092 2.9588 -1.2573 26 7 7.3377 2.5601 -0.4596 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.3144 1.8748 -1.9131 33 1 2.1786 3.1803 -1.0661 34 1 3.3892 3.7361 -4.4263 35 1 4.1340 1.1181 2.5779 36 1 4.9634 3.1761 0.7344 37 1 5.0736 1.5467 0.0264 38 1 7.4949 0.2306 2.5292 39 1 5.7259 0.0659 2.6326 40 1 6.5520 -0.1733 1.0743 41 1 6.2872 3.7432 2.7761 42 1 5.5712 2.3530 3.6264 43 1 7.3403 2.5174 3.5228 44 1 8.9530 2.3390 2.4356 45 1 10.8293 3.0794 0.9825 46 1 10.3779 3.4864 -1.4284 47 1 8.1043 3.1292 -2.3040 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451674007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:35 Heat of formation + Delta-G solvation = -71.662877 kcal Electronic energy + Delta-G solvation = -29810.563397 eV Core-core repulsion = 25925.987468 eV Total energy + Delta-G solvation = -3884.575929 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.42398 -38.51341 -38.18967 -37.64090 -36.86789 -34.63681 -34.27346 -33.36263 -31.48658 -30.88874 -28.48179 -28.16628 -27.15976 -24.91661 -24.43278 -24.06254 -23.24582 -20.57592 -20.42443 -18.85251 -18.53907 -18.27220 -17.67657 -17.31551 -17.02443 -16.49997 -16.19580 -15.99166 -15.74648 -15.26161 -15.10606 -14.76473 -14.67131 -14.52373 -14.33487 -13.94269 -13.75028 -13.63449 -13.35852 -13.34418 -13.16160 -13.14803 -12.97356 -12.91216 -12.70569 -12.68691 -12.65500 -12.27910 -12.13038 -12.03128 -12.00628 -11.76829 -11.61653 -11.54072 -10.75553 -10.52959 -10.40336 -10.10820 -9.85771 -9.75037 -8.11840 -6.22314 -0.25216 0.21303 0.46189 1.40128 1.42209 1.56052 2.03527 2.47289 2.64169 2.90507 3.21782 3.27128 3.44118 3.73946 3.92816 3.99284 4.03347 4.11250 4.17949 4.29002 4.31744 4.42905 4.47367 4.59580 4.70612 4.72787 4.76331 4.85007 4.87484 4.92680 4.99270 5.01660 5.09065 5.18037 5.22063 5.26692 5.30965 5.31578 5.39655 5.43024 5.45143 5.56327 5.83049 5.85610 5.95412 6.16069 6.28971 6.88458 7.19349 7.47500 8.96837 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010009 B = 0.005876 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.785873 B = 4763.779196 C = 6771.357253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.260 3.740 5 C -0.521 4.521 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.931 5.931 9 Si 0.952 3.048 10 H -0.263 1.263 11 H -0.290 1.290 12 H -0.278 1.278 13 S 2.798 3.202 14 O -1.004 7.004 15 O -1.021 7.021 16 N -1.111 6.111 17 C 0.149 3.851 18 C -0.020 4.020 19 C -0.132 4.132 20 C -0.139 4.139 21 C 0.122 3.878 22 C -0.161 4.161 23 C -0.071 4.071 24 C -0.174 4.174 25 C 0.070 3.930 26 N -0.512 5.512 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.017 0.983 33 H 0.018 0.982 34 H 0.262 0.738 35 H 0.421 0.579 36 H 0.040 0.960 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.167 0.833 45 H 0.173 0.827 46 H 0.159 0.841 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.729 -6.662 12.589 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.136 3.864 5 C -0.560 4.560 6 H 0.088 0.912 7 C -0.181 4.181 8 N -0.571 5.571 9 Si 0.778 3.222 10 H -0.187 1.187 11 H -0.216 1.216 12 H -0.204 1.204 13 S 2.806 3.194 14 O -0.987 6.987 15 O -1.005 7.005 16 N -0.875 5.875 17 C 0.023 3.977 18 C -0.023 4.023 19 C -0.190 4.190 20 C -0.197 4.197 21 C -0.017 4.017 22 C -0.181 4.181 23 C -0.097 4.097 24 C -0.193 4.193 25 C -0.087 4.087 26 N -0.221 5.221 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.035 0.965 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.258 0.742 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.184 0.816 45 H 0.190 0.810 46 H 0.177 0.823 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 12.273 -5.973 12.438 18.466 hybrid contribution 1.324 0.076 -0.999 1.661 sum 13.597 -5.897 11.439 18.722 Atomic orbital electron populations 1.22197 0.95925 1.03203 1.01348 1.21242 0.94619 0.81204 1.03254 1.57618 1.79348 1.24119 1.22628 1.18729 0.96431 0.90968 0.80271 1.21715 1.06723 1.19130 1.08447 0.91154 1.25640 0.99724 0.94753 0.97987 1.70080 1.39924 1.25282 1.21831 0.85604 0.80484 0.78622 0.77471 1.18666 1.21632 1.20365 1.01144 0.73186 0.72793 0.72268 1.93531 1.66296 1.79554 1.59368 1.93525 1.87333 1.33902 1.85700 1.55617 1.23732 1.68635 1.39555 1.21049 0.84835 0.98771 0.93058 1.19736 0.89915 0.98229 0.94410 1.21857 1.03827 0.91457 1.01827 1.21968 1.04158 0.98926 0.94623 1.21325 0.94908 0.95412 0.90062 1.22209 0.92306 1.00812 1.02764 1.21992 1.00594 0.94298 0.92804 1.22397 0.97691 1.01450 0.97799 1.22876 0.90204 0.96042 0.99537 1.67478 1.36471 1.12088 1.06035 0.93311 0.93540 0.89023 0.90234 0.89517 0.96476 0.96410 0.92938 0.74167 0.94134 0.91000 0.89570 0.90283 0.93751 0.93851 0.90770 0.88826 0.81601 0.80984 0.82301 0.84640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.28 10.24 71.98 0.74 -4.55 16 2 C 0.12 4.21 6.03 86.38 0.52 4.73 16 3 N -1.00 -42.49 2.84 -519.82 -1.48 -43.97 16 4 C 0.26 13.66 5.46 85.63 0.47 14.13 16 5 C -0.52 -28.12 8.48 25.60 0.22 -27.90 16 6 H 0.07 3.65 6.57 -2.91 -0.02 3.63 16 7 C 0.02 1.01 5.46 84.65 0.46 1.47 16 8 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 9 Si 0.95 44.87 29.54 68.60 2.03 46.89 16 10 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 S 2.80 114.87 6.08 -56.49 -0.34 114.53 16 14 O -1.00 -40.45 17.17 -128.00 -2.20 -42.65 16 15 O -1.02 -51.42 15.97 -128.00 -2.04 -53.46 16 16 N -1.11 -36.25 5.39 -187.49 -1.01 -37.26 16 17 C 0.15 5.41 4.45 86.38 0.38 5.79 16 18 C -0.02 -0.54 0.64 -52.93 -0.03 -0.57 16 19 C -0.13 -2.69 8.24 71.98 0.59 -2.10 16 20 C -0.14 -2.89 7.92 71.98 0.57 -2.32 16 21 C 0.12 3.45 5.56 42.55 0.24 3.68 16 22 C -0.16 -3.18 9.08 22.36 0.20 -2.98 16 23 C -0.07 -1.23 10.18 22.47 0.23 -1.00 16 24 C -0.17 -3.75 10.11 22.36 0.23 -3.52 16 25 C 0.07 2.18 11.18 84.67 0.95 3.12 16 26 N -0.51 -18.37 9.03 -183.89 -1.66 -20.03 16 27 H 0.05 1.60 7.97 -2.38 -0.02 1.58 16 28 H 0.05 1.57 8.11 -2.39 -0.02 1.55 16 29 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.08 2.75 8.10 -2.39 -0.02 2.73 16 31 H 0.09 2.50 7.78 -2.39 -0.02 2.48 16 32 H 0.02 0.94 8.10 -2.39 -0.02 0.92 16 33 H 0.02 1.07 6.78 -2.39 -0.02 1.06 16 34 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.42 10.37 6.46 -96.75 -0.63 9.74 16 36 H 0.04 1.77 7.73 -2.38 -0.02 1.75 16 37 H 0.07 3.02 5.62 -2.39 -0.01 3.00 16 38 H 0.09 1.26 8.09 -2.39 -0.02 1.24 16 39 H 0.08 1.35 6.61 -2.39 -0.02 1.33 16 40 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.07 1.40 7.18 -2.39 -0.02 1.38 16 43 H 0.09 1.26 6.70 -2.38 -0.02 1.24 16 44 H 0.17 2.04 6.73 -2.91 -0.02 2.02 16 45 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 46 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 47 H 0.14 4.40 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -77.08 389.07 -0.32 -77.39 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.35 Total: 26.42 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 5.76 Total: -12.01 kcal Atomic # 7 Polarization: -153.25 SS G_CDS: -3.86 Total: -157.11 kcal Atomic # 8 Polarization: -91.87 SS G_CDS: -4.24 Total: -96.11 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 114.87 SS G_CDS: -0.34 Total: 114.53 kcal Total: -77.08 -0.32 -77.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451674007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.730 kcal (2) G-P(sol) polarization free energy of solvation -77.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds