Wall clock time and date at job start Wed Apr 1 2020 01:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46493 * 109.47268 * 2 1 4 4 C 1.46502 * 120.00184 * 274.05048 * 3 2 1 5 5 C 1.50703 * 109.47144 * 280.95632 * 4 3 2 6 6 H 1.08000 * 119.99833 * 3.32941 * 5 4 3 7 7 C 1.37879 * 119.99914 * 183.32099 * 5 4 3 8 8 N 1.31514 * 120.00075 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99618 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47387 * 60.00325 * 9 7 5 11 11 H 1.48496 * 109.46608 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46978 * 299.99993 * 9 7 5 13 13 S 1.65602 * 120.00021 * 94.05198 * 3 2 1 14 14 O 1.42098 * 106.40147 * 336.36196 * 13 3 2 15 15 O 1.42100 * 106.40064 * 203.44385 * 13 3 2 16 16 N 1.65600 * 107.21926 * 89.90376 * 13 3 2 17 17 C 1.46499 * 119.99604 * 65.59945 * 16 13 3 18 18 C 1.53005 * 109.46671 * 164.31132 * 17 16 13 19 19 C 1.53001 * 109.46809 * 179.97438 * 18 17 16 20 20 C 1.50708 * 109.46681 * 179.97438 * 19 18 17 21 21 N 1.31886 * 119.61853 * 90.00125 * 20 19 18 22 22 C 1.31849 * 121.72333 * 179.97438 * 21 20 19 23 23 C 1.38221 * 120.76657 * 359.97438 * 22 21 20 24 24 C 1.38627 * 119.16086 * 359.97438 * 23 22 21 25 25 C 1.38181 * 119.61429 * 269.71699 * 20 19 18 26 26 C 1.50704 * 120.42163 * 0.03310 * 25 20 19 27 27 H 1.08999 * 109.47315 * 65.04576 * 1 2 3 28 28 H 1.09000 * 109.47126 * 185.05598 * 1 2 3 29 29 H 1.09001 * 109.46371 * 305.05188 * 1 2 3 30 30 H 1.09004 * 109.46923 * 239.99828 * 2 1 3 31 31 H 1.09001 * 109.47164 * 120.00346 * 2 1 3 32 32 H 1.08999 * 109.47201 * 40.95452 * 4 3 2 33 33 H 1.09000 * 109.47401 * 160.95696 * 4 3 2 34 34 H 0.97004 * 119.99697 * 179.97438 * 8 7 5 35 35 H 0.96995 * 119.99792 * 245.59579 * 16 13 3 36 36 H 1.08998 * 109.47443 * 44.30963 * 17 16 13 37 37 H 1.09006 * 109.47137 * 284.30166 * 17 16 13 38 38 H 1.09007 * 109.47070 * 299.99365 * 18 17 16 39 39 H 1.08998 * 109.47325 * 59.99759 * 18 17 16 40 40 H 1.09006 * 109.47119 * 299.99107 * 19 18 17 41 41 H 1.08998 * 109.47322 * 59.99820 * 19 18 17 42 42 H 1.08007 * 119.61670 * 179.97438 * 22 21 20 43 43 H 1.08002 * 120.42059 * 180.02562 * 23 22 21 44 44 H 1.08001 * 120.79078 * 180.02562 * 24 23 22 45 45 H 1.08996 * 109.47319 * 89.99485 * 26 25 20 46 46 H 1.08995 * 109.46864 * 209.99937 * 26 25 20 47 47 H 1.09003 * 109.46687 * 329.99192 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1781 2.1017 -1.2656 5 6 3.4578 1.6676 -1.9327 6 1 4.0618 0.8904 -1.4883 7 6 3.8573 2.2625 -3.1106 8 7 3.1220 3.2092 -3.6517 9 14 5.4432 1.7239 -3.9379 10 1 5.3599 0.2802 -4.2755 11 1 5.6460 2.5122 -5.1799 12 1 6.5846 1.9515 -3.0157 13 16 2.3899 2.1280 1.4306 14 8 1.6470 1.4564 2.4386 15 8 2.2893 3.5252 1.1917 16 7 3.9868 1.8209 1.7436 17 6 5.0235 2.3639 0.8623 18 6 6.3821 2.2799 1.5611 19 6 7.4649 2.8463 0.6404 20 6 8.8030 2.7642 1.3290 21 7 9.5475 1.6858 1.1801 22 6 10.7246 1.5701 1.7628 23 6 11.2232 2.5856 2.5570 24 6 10.4694 3.7351 2.7361 25 6 9.2381 3.8220 2.1042 26 6 8.3835 5.0530 2.2643 27 1 -0.3634 0.4336 -0.9317 28 1 -0.3633 -1.0237 0.0906 29 1 -0.3632 0.5902 0.8413 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.3343 1.8798 -1.9190 33 1 2.2152 3.1736 -1.0713 34 1 3.4033 3.6280 -4.4802 35 1 4.2357 1.2816 2.5105 36 1 4.7967 3.4050 0.6328 37 1 5.0540 1.7863 -0.0617 38 1 6.3518 2.8574 2.4851 39 1 6.6089 1.2388 1.7906 40 1 7.4952 2.2684 -0.2833 41 1 7.2383 3.8874 0.4106 42 1 11.3059 0.6714 1.6180 43 1 12.1883 2.4851 3.0313 44 1 10.8338 4.5450 3.3507 45 1 7.7283 4.9307 3.1268 46 1 9.0234 5.9225 2.4145 47 1 7.7808 5.1960 1.3674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451808871.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:31 Heat of formation + Delta-G solvation = -61.779752 kcal Electronic energy + Delta-G solvation = -28415.932272 eV Core-core repulsion = 24531.784908 eV Total energy + Delta-G solvation = -3884.147364 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.48421 -36.68248 -36.19296 -35.91406 -35.16334 -33.94530 -33.26686 -32.70422 -30.47028 -29.90426 -27.52051 -26.62530 -25.75667 -23.13317 -22.74983 -22.09285 -21.66909 -21.03582 -18.70671 -17.06516 -16.95821 -16.76872 -16.63329 -16.37865 -15.62910 -15.19331 -14.85351 -14.77328 -14.52229 -14.28184 -13.76892 -13.34674 -13.30231 -13.10906 -12.97338 -12.85276 -12.73811 -12.52778 -12.16512 -12.03843 -11.93771 -11.71887 -11.61703 -11.43068 -11.32389 -11.27798 -11.04764 -10.94677 -10.87579 -10.63742 -10.46013 -10.35309 -10.00477 -9.83321 -9.78931 -9.47485 -8.91199 -8.83910 -8.50095 -8.03256 -6.11487 -4.18141 0.97748 1.15283 1.36245 3.26295 3.32485 3.34369 3.56914 3.68713 4.19669 4.23729 4.35695 4.56254 4.65010 4.79041 4.87885 5.06768 5.18845 5.21920 5.23861 5.29830 5.36227 5.45924 5.48762 5.52412 5.66720 5.75488 5.79807 5.85560 5.88079 5.91877 6.02050 6.09392 6.14732 6.21364 6.26493 6.36440 6.47341 6.60833 6.67585 6.70208 6.75599 7.33090 7.40764 7.49094 7.70783 7.85968 7.94392 8.16094 8.86304 9.47486 10.96107 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010377 B = 0.003805 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.649325 B = 7356.786865 C = 8942.453102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.132 3.868 3 N -0.992 5.992 4 C 0.244 3.756 5 C -0.540 4.540 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.271 1.271 13 S 2.786 3.214 14 O -1.003 7.003 15 O -0.982 6.982 16 N -1.130 6.130 17 C 0.115 3.885 18 C -0.112 4.112 19 C -0.078 4.078 20 C 0.139 3.861 21 N -0.478 5.478 22 C 0.093 3.907 23 C -0.180 4.180 24 C -0.078 4.078 25 C -0.133 4.133 26 C -0.117 4.117 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.034 0.966 33 H 0.054 0.946 34 H 0.265 0.735 35 H 0.405 0.595 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.153 0.847 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.420 -1.277 11.539 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.005 3.995 3 N -0.833 5.833 4 C 0.121 3.879 5 C -0.579 4.579 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.525 5.525 9 Si 0.715 3.285 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.197 1.197 13 S 2.794 3.206 14 O -0.987 6.987 15 O -0.965 6.965 16 N -0.889 5.889 17 C -0.011 4.011 18 C -0.152 4.152 19 C -0.117 4.117 20 C 0.001 3.999 21 N -0.186 5.186 22 C -0.064 4.064 23 C -0.200 4.200 24 C -0.104 4.104 25 C -0.135 4.135 26 C -0.174 4.174 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.237 0.763 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.170 0.830 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.447 -1.177 11.205 15.364 hybrid contribution 1.832 -0.133 0.033 1.837 sum 12.279 -1.310 11.238 16.697 Atomic orbital electron populations 1.22202 0.97047 1.01272 1.02305 1.20948 0.93522 0.82916 1.02114 1.57707 1.78775 1.22996 1.23867 1.19201 0.97149 0.92526 0.78979 1.21496 1.07361 1.21230 1.07806 0.91760 1.24930 0.97020 0.94741 0.96934 1.69928 1.38055 1.24805 1.19731 0.86733 0.83889 0.78758 0.79142 1.20239 1.21293 1.19674 1.01677 0.72619 0.73681 0.72605 1.93540 1.69855 1.76552 1.58729 1.93568 1.86016 1.31291 1.85642 1.55950 1.25587 1.68351 1.39001 1.21473 0.85692 1.00480 0.93476 1.21657 0.93437 1.01687 0.98401 1.20615 0.88590 1.03347 0.99119 1.21218 0.95884 0.88777 0.93990 1.67552 1.05691 1.24493 1.20855 1.22731 0.92141 0.98364 0.93185 1.22086 1.01357 0.95218 1.01373 1.21463 0.93606 0.97795 0.97541 1.20786 0.96259 0.97821 0.98673 1.20866 0.99132 0.93867 1.03537 0.92178 0.92447 0.92702 0.90102 0.92052 0.94827 0.92793 0.92532 0.76307 0.90345 0.88907 0.91773 0.91279 0.89105 0.89261 0.82983 0.85087 0.85075 0.90612 0.91497 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 10.24 37.16 0.38 -2.32 16 2 C 0.13 2.29 6.01 -4.04 -0.02 2.26 16 3 N -0.99 -20.04 2.84 -115.66 -0.33 -20.37 16 4 C 0.24 5.85 5.48 -5.19 -0.03 5.82 16 5 C -0.54 -13.37 7.95 -34.44 -0.27 -13.65 16 6 H 0.06 1.53 6.74 -52.49 -0.35 1.18 16 7 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -24.58 13.29 55.43 0.74 -23.84 16 9 Si 0.89 20.02 29.54 -169.99 -5.02 15.00 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 S 2.79 54.46 6.11 -107.50 -0.66 53.80 16 14 O -1.00 -20.29 17.09 -57.17 -0.98 -21.27 16 15 O -0.98 -22.45 16.09 -57.17 -0.92 -23.37 16 16 N -1.13 -18.18 6.05 -10.61 -0.06 -18.24 16 17 C 0.11 1.88 6.16 -4.04 -0.02 1.86 16 18 C -0.11 -1.51 5.34 -26.73 -0.14 -1.65 16 19 C -0.08 -1.07 5.11 -27.88 -0.14 -1.21 16 20 C 0.14 1.85 6.03 -82.59 -0.50 1.35 16 21 N -0.48 -6.67 10.27 -9.47 -0.10 -6.77 16 22 C 0.09 1.02 11.18 -17.55 -0.20 0.83 16 23 C -0.18 -1.66 10.11 -39.44 -0.40 -2.06 16 24 C -0.08 -0.75 9.86 -39.28 -0.39 -1.13 16 25 C -0.13 -1.49 5.90 -104.48 -0.62 -2.11 16 26 C -0.12 -1.08 9.62 36.01 0.35 -0.74 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 30 H 0.08 1.40 8.05 -51.93 -0.42 0.99 16 31 H 0.06 0.96 7.65 -51.93 -0.40 0.56 16 32 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 1.43 6.83 -51.93 -0.35 1.08 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.41 5.39 8.66 -34.47 -0.30 5.09 16 36 H 0.08 1.39 7.72 -51.93 -0.40 0.99 16 37 H 0.09 1.70 5.60 -51.93 -0.29 1.41 16 38 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.09 1.12 5.93 -51.93 -0.31 0.81 16 42 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 43 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 47 H 0.08 0.77 5.95 -51.93 -0.31 0.46 16 LS Contribution 395.85 15.07 5.97 5.97 Total: -1.00 -31.97 395.85 -10.80 -42.77 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -7.33 Total: 7.42 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -2.10 Total: -11.10 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: 0.25 Total: -69.22 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -1.90 Total: -44.64 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 54.46 SS G_CDS: -0.66 Total: 53.80 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.97 -10.80 -42.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451808871.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.007 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds