Wall clock time and date at job start Wed Apr 1 2020 01:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46493 * 109.47268 * 2 1 4 4 C 1.46502 * 120.00184 * 274.05048 * 3 2 1 5 5 C 1.50703 * 109.47144 * 280.95632 * 4 3 2 6 6 H 1.08000 * 119.99833 * 3.32941 * 5 4 3 7 7 C 1.37879 * 119.99914 * 183.32099 * 5 4 3 8 8 N 1.31514 * 120.00075 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99618 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47387 * 60.00325 * 9 7 5 11 11 H 1.48496 * 109.46608 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46978 * 299.99993 * 9 7 5 13 13 S 1.65602 * 120.00021 * 94.05198 * 3 2 1 14 14 O 1.42098 * 106.40147 * 336.36196 * 13 3 2 15 15 O 1.42100 * 106.40064 * 203.44385 * 13 3 2 16 16 N 1.65600 * 107.21926 * 89.90376 * 13 3 2 17 17 C 1.46499 * 119.99604 * 65.59945 * 16 13 3 18 18 C 1.53005 * 109.46671 * 164.31132 * 17 16 13 19 19 C 1.53001 * 109.46809 * 179.97438 * 18 17 16 20 20 C 1.50708 * 109.46681 * 179.97438 * 19 18 17 21 21 N 1.31886 * 119.61853 * 90.00125 * 20 19 18 22 22 C 1.31849 * 121.72333 * 179.97438 * 21 20 19 23 23 C 1.38221 * 120.76657 * 359.97438 * 22 21 20 24 24 C 1.38627 * 119.16086 * 359.97438 * 23 22 21 25 25 C 1.38181 * 119.61429 * 269.71699 * 20 19 18 26 26 C 1.50704 * 120.42163 * 0.03310 * 25 20 19 27 27 H 1.08999 * 109.47315 * 65.04576 * 1 2 3 28 28 H 1.09000 * 109.47126 * 185.05598 * 1 2 3 29 29 H 1.09001 * 109.46371 * 305.05188 * 1 2 3 30 30 H 1.09004 * 109.46923 * 239.99828 * 2 1 3 31 31 H 1.09001 * 109.47164 * 120.00346 * 2 1 3 32 32 H 1.08999 * 109.47201 * 40.95452 * 4 3 2 33 33 H 1.09000 * 109.47401 * 160.95696 * 4 3 2 34 34 H 0.97004 * 119.99697 * 179.97438 * 8 7 5 35 35 H 0.96995 * 119.99792 * 245.59579 * 16 13 3 36 36 H 1.08998 * 109.47443 * 44.30963 * 17 16 13 37 37 H 1.09006 * 109.47137 * 284.30166 * 17 16 13 38 38 H 1.09007 * 109.47070 * 299.99365 * 18 17 16 39 39 H 1.08998 * 109.47325 * 59.99759 * 18 17 16 40 40 H 1.09006 * 109.47119 * 299.99107 * 19 18 17 41 41 H 1.08998 * 109.47322 * 59.99820 * 19 18 17 42 42 H 1.08007 * 119.61670 * 179.97438 * 22 21 20 43 43 H 1.08002 * 120.42059 * 180.02562 * 23 22 21 44 44 H 1.08001 * 120.79078 * 180.02562 * 24 23 22 45 45 H 1.08996 * 109.47319 * 89.99485 * 26 25 20 46 46 H 1.08995 * 109.46864 * 209.99937 * 26 25 20 47 47 H 1.09003 * 109.46687 * 329.99192 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1781 2.1017 -1.2656 5 6 3.4578 1.6676 -1.9327 6 1 4.0618 0.8904 -1.4883 7 6 3.8573 2.2625 -3.1106 8 7 3.1220 3.2092 -3.6517 9 14 5.4432 1.7239 -3.9379 10 1 5.3599 0.2802 -4.2755 11 1 5.6460 2.5122 -5.1799 12 1 6.5846 1.9515 -3.0157 13 16 2.3899 2.1280 1.4306 14 8 1.6470 1.4564 2.4386 15 8 2.2893 3.5252 1.1917 16 7 3.9868 1.8209 1.7436 17 6 5.0235 2.3639 0.8623 18 6 6.3821 2.2799 1.5611 19 6 7.4649 2.8463 0.6404 20 6 8.8030 2.7642 1.3290 21 7 9.5475 1.6858 1.1801 22 6 10.7246 1.5701 1.7628 23 6 11.2232 2.5856 2.5570 24 6 10.4694 3.7351 2.7361 25 6 9.2381 3.8220 2.1042 26 6 8.3835 5.0530 2.2643 27 1 -0.3634 0.4336 -0.9317 28 1 -0.3633 -1.0237 0.0906 29 1 -0.3632 0.5902 0.8413 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.3343 1.8798 -1.9190 33 1 2.2152 3.1736 -1.0713 34 1 3.4033 3.6280 -4.4802 35 1 4.2357 1.2816 2.5105 36 1 4.7967 3.4050 0.6328 37 1 5.0540 1.7863 -0.0617 38 1 6.3518 2.8574 2.4851 39 1 6.6089 1.2388 1.7906 40 1 7.4952 2.2684 -0.2833 41 1 7.2383 3.8874 0.4106 42 1 11.3059 0.6714 1.6180 43 1 12.1883 2.4851 3.0313 44 1 10.8338 4.5450 3.3507 45 1 7.7283 4.9307 3.1268 46 1 9.0234 5.9225 2.4145 47 1 7.7808 5.1960 1.3674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451808871.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:30 Heat of formation + Delta-G solvation = -83.367748 kcal Electronic energy + Delta-G solvation = -28416.868398 eV Core-core repulsion = 24531.784908 eV Total energy + Delta-G solvation = -3885.083490 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.30388 -38.32396 -37.70254 -37.31852 -36.86056 -34.90213 -34.63732 -34.17261 -31.50309 -31.46493 -28.49010 -28.30573 -26.83109 -24.90848 -23.69975 -23.28468 -22.99490 -22.05155 -20.26400 -18.63877 -18.56202 -18.23465 -17.78902 -17.52819 -17.09754 -16.62008 -16.10101 -15.97402 -15.67528 -15.42239 -15.25253 -14.80011 -14.59467 -14.12460 -14.07052 -13.89824 -13.74535 -13.64525 -13.63611 -13.54579 -13.32790 -13.24510 -13.10973 -13.00099 -12.72802 -12.67633 -12.61718 -12.51749 -12.23274 -12.13383 -11.97571 -11.75160 -11.63940 -11.53874 -10.62103 -10.52843 -10.34757 -10.29876 -9.76261 -9.66993 -8.12450 -6.24638 -0.24959 0.18555 0.38578 1.46454 1.47876 1.53978 2.03904 2.45315 2.64455 2.84677 3.19913 3.33983 3.50496 3.74480 3.94856 3.98787 4.00118 4.11776 4.16654 4.19766 4.26295 4.45514 4.49443 4.56325 4.64474 4.68838 4.73290 4.75313 4.82497 4.83301 4.93701 5.01276 5.03169 5.14953 5.19256 5.23619 5.29804 5.31850 5.38283 5.42754 5.44147 5.57412 5.81932 5.86486 5.93077 6.16317 6.26692 6.86852 7.11471 7.44773 8.95497 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010377 B = 0.003805 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.649325 B = 7356.786865 C = 8942.453102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.259 3.741 5 C -0.534 4.534 6 H 0.074 0.926 7 C 0.020 3.980 8 N -0.926 5.926 9 Si 0.945 3.055 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.261 1.261 13 S 2.800 3.200 14 O -1.006 7.006 15 O -1.017 7.017 16 N -1.114 6.114 17 C 0.117 3.883 18 C -0.098 4.098 19 C -0.076 4.076 20 C 0.113 3.887 21 N -0.514 5.514 22 C 0.076 3.924 23 C -0.171 4.171 24 C -0.080 4.080 25 C -0.140 4.140 26 C -0.117 4.117 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.015 0.985 33 H 0.023 0.977 34 H 0.264 0.736 35 H 0.421 0.579 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.173 0.827 43 H 0.165 0.835 44 H 0.162 0.838 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.713 -2.208 13.334 19.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.837 5.837 4 C 0.136 3.864 5 C -0.573 4.573 6 H 0.093 0.907 7 C -0.180 4.180 8 N -0.566 5.566 9 Si 0.770 3.230 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.186 1.186 13 S 2.808 3.192 14 O -0.990 6.990 15 O -1.001 7.001 16 N -0.876 5.876 17 C -0.009 4.009 18 C -0.137 4.137 19 C -0.115 4.115 20 C -0.024 4.024 21 N -0.223 5.223 22 C -0.081 4.081 23 C -0.190 4.190 24 C -0.106 4.106 25 C -0.142 4.142 26 C -0.174 4.174 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.033 0.967 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.257 0.743 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.111 0.889 42 H 0.190 0.810 43 H 0.183 0.817 44 H 0.179 0.821 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.729 -2.142 13.032 18.343 hybrid contribution 1.154 0.125 -0.445 1.243 sum 13.882 -2.017 12.587 18.847 Atomic orbital electron populations 1.22189 0.95980 1.03117 1.01312 1.21228 0.94549 0.81356 1.03235 1.57625 1.79468 1.24097 1.22536 1.18746 0.96340 0.91199 0.80153 1.21740 1.07328 1.20778 1.07465 0.90748 1.25655 0.99812 0.94785 0.97716 1.70056 1.39914 1.26332 1.20296 0.85809 0.80716 0.78378 0.78086 1.19609 1.21649 1.18563 1.01112 0.73156 0.72772 0.72168 1.93528 1.70535 1.76361 1.58574 1.93525 1.86785 1.33707 1.86064 1.55567 1.24217 1.68402 1.39459 1.21397 0.87244 0.99015 0.93237 1.21529 0.91351 1.02253 0.98615 1.20535 0.89630 1.03105 0.98248 1.21116 0.95806 0.89880 0.95611 1.67466 1.07195 1.25343 1.22303 1.23186 0.91604 0.99878 0.93405 1.22469 1.02338 0.94199 0.99986 1.21875 0.92781 0.98765 0.97155 1.20989 0.97243 0.97627 0.98347 1.20904 0.99303 0.93949 1.03264 0.93279 0.89164 0.93604 0.90095 0.89744 0.96686 0.95896 0.92675 0.74335 0.92013 0.90852 0.90087 0.90915 0.91504 0.88882 0.81025 0.81720 0.82084 0.90021 0.89564 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.16 10.24 71.98 0.74 -4.43 16 2 C 0.12 4.11 6.01 86.38 0.52 4.63 16 3 N -1.00 -40.53 2.84 -519.84 -1.48 -42.01 16 4 C 0.26 12.84 5.48 85.63 0.47 13.31 16 5 C -0.53 -26.85 7.95 25.60 0.20 -26.64 16 6 H 0.07 3.53 6.74 -2.91 -0.02 3.51 16 7 C 0.02 1.06 5.46 84.66 0.46 1.52 16 8 N -0.93 -52.74 13.29 21.45 0.28 -52.46 16 9 Si 0.94 41.44 29.54 68.60 2.03 43.47 16 10 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 12 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 13 S 2.80 109.38 6.11 -56.49 -0.34 109.04 16 14 O -1.01 -39.63 17.09 -128.00 -2.19 -41.82 16 15 O -1.02 -47.66 16.09 -128.00 -2.06 -49.72 16 16 N -1.11 -35.08 6.05 -187.48 -1.13 -36.22 16 17 C 0.12 3.87 6.16 86.38 0.53 4.40 16 18 C -0.10 -2.58 5.34 30.60 0.16 -2.42 16 19 C -0.08 -2.11 5.11 29.85 0.15 -1.96 16 20 C 0.11 2.93 6.03 42.54 0.26 3.18 16 21 N -0.51 -13.98 10.27 -183.88 -1.89 -15.87 16 22 C 0.08 1.53 11.18 84.69 0.95 2.48 16 23 C -0.17 -2.59 10.11 22.36 0.23 -2.36 16 24 C -0.08 -1.28 9.86 22.47 0.22 -1.06 16 25 C -0.14 -2.88 5.90 -19.77 -0.12 -3.00 16 26 C -0.12 -1.97 9.62 71.24 0.69 -1.29 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.04 1.48 8.10 -2.39 -0.02 1.47 16 30 H 0.08 2.73 8.05 -2.38 -0.02 2.71 16 31 H 0.08 2.46 7.65 -2.39 -0.02 2.44 16 32 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.02 1.28 6.83 -2.39 -0.02 1.27 16 34 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 35 H 0.42 10.51 8.66 -96.75 -0.84 9.68 16 36 H 0.06 2.25 7.72 -2.39 -0.02 2.23 16 37 H 0.07 2.73 5.60 -2.38 -0.01 2.71 16 38 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 41 H 0.09 2.40 5.93 -2.39 -0.01 2.39 16 42 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 43 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 44 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 45 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.09 1.09 8.10 -2.39 -0.02 1.07 16 47 H 0.07 1.31 5.95 -2.39 -0.01 1.29 16 Total: -1.00 -70.04 395.85 -1.19 -71.23 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.13 Total: 27.98 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: 5.46 Total: -13.62 kcal Atomic # 7 Polarization: -142.33 SS G_CDS: -4.22 Total: -146.55 kcal Atomic # 8 Polarization: -87.29 SS G_CDS: -4.25 Total: -91.54 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 16 Polarization: 109.38 SS G_CDS: -0.34 Total: 109.04 kcal Total: -70.04 -1.19 -71.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451808871.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.135 kcal (2) G-P(sol) polarization free energy of solvation -70.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds