Wall clock time and date at job start Wed Apr 1 2020 00:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47651 * 2 1 4 4 N 1.40085 * 126.03162 * 269.97331 * 3 2 1 5 5 C 1.30839 * 108.19984 * 179.73248 * 4 3 2 6 6 C 1.50704 * 125.89865 * 180.25760 * 5 4 3 7 7 C 1.39877 * 108.20406 * 0.44174 * 5 4 3 8 8 S 1.76196 * 126.03982 * 179.81469 * 7 5 4 9 9 O 1.42099 * 106.40063 * 156.15267 * 8 7 5 10 10 O 1.42097 * 106.40586 * 23.22845 * 8 7 5 11 11 N 1.65608 * 107.21621 * 269.69132 * 8 7 5 12 12 C 1.46924 * 120.63060 * 269.71969 * 11 8 7 13 13 C 1.52758 * 109.00972 * 233.58904 * 12 11 8 14 14 C 1.53044 * 109.38036 * 305.58829 * 13 12 11 15 15 C 1.50703 * 109.45971 * 181.26269 * 14 13 12 16 16 H 1.07995 * 119.99527 * 239.92829 * 15 14 13 17 17 C 1.37869 * 120.00152 * 59.93036 * 15 14 13 18 18 N 1.31517 * 119.99896 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00215 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46943 * 89.99758 * 19 17 15 21 21 H 1.48498 * 109.47619 * 209.99907 * 19 17 15 22 22 H 1.48495 * 109.47197 * 330.00268 * 19 17 15 23 23 C 1.53038 * 109.54298 * 61.23899 * 14 13 12 24 24 C 1.46929 * 120.63014 * 90.00261 * 11 8 7 25 25 C 1.34941 * 126.03631 * 89.99563 * 3 2 1 26 26 C 1.50702 * 126.13040 * 0.02562 * 25 3 2 27 27 H 1.08999 * 109.47280 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47085 * 300.00540 * 1 2 3 29 29 H 1.09006 * 109.46590 * 60.00366 * 1 2 3 30 30 H 1.09001 * 109.47591 * 239.99374 * 2 1 3 31 31 H 1.09006 * 109.46590 * 119.99634 * 2 1 3 32 32 H 1.09003 * 109.46932 * 270.21625 * 6 5 4 33 33 H 1.08991 * 109.46954 * 30.21491 * 6 5 4 34 34 H 1.08995 * 109.46838 * 150.21907 * 6 5 4 35 35 H 1.09001 * 109.58600 * 353.42039 * 12 11 8 36 36 H 1.08999 * 109.58625 * 113.84142 * 12 11 8 37 37 H 1.08995 * 109.56671 * 185.55618 * 13 12 11 38 38 H 1.09003 * 109.36479 * 65.49723 * 13 12 11 39 39 H 1.09004 * 109.45962 * 301.22169 * 14 13 12 40 40 H 0.97005 * 119.99738 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.50225 * 178.68217 * 23 14 13 42 42 H 1.09004 * 109.52031 * 58.59993 * 23 14 13 43 43 H 1.09000 * 109.58507 * 246.15290 * 24 11 8 44 44 H 1.09003 * 109.58672 * 6.43817 * 24 11 8 45 45 H 1.09005 * 109.46817 * 269.97401 * 26 25 3 46 46 H 1.08989 * 109.46890 * 29.97619 * 26 25 3 47 47 H 1.08995 * 109.46987 * 149.98010 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 7 2.2937 2.1579 -1.1329 5 6 2.7033 3.3341 -0.7322 6 6 3.1017 4.4820 -1.6238 7 6 2.7118 3.3408 0.6665 8 16 3.1891 4.6904 1.6939 9 8 2.5412 4.4925 2.9430 10 8 3.0281 5.8662 0.9124 11 7 4.8131 4.5380 1.9801 12 6 5.3009 3.7795 3.1400 13 6 6.2522 4.6613 3.9469 14 6 7.3582 5.1876 3.0293 15 6 8.3152 6.0326 3.8301 16 1 8.4666 7.0699 3.5705 17 6 8.9973 5.4814 4.8939 18 7 8.8132 4.2180 5.2095 19 14 10.1840 6.5286 5.8860 20 1 9.4558 7.1739 7.0080 21 1 11.2678 5.6702 6.4280 22 1 10.7718 7.5746 5.0110 23 6 6.7392 6.0350 1.9153 24 6 5.7935 5.1640 1.0823 25 6 2.2831 2.1297 1.0912 26 6 2.1296 1.6944 2.5258 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.1676 4.4189 -1.8429 33 1 2.5359 4.4327 -2.5540 34 1 2.8897 5.4245 -1.1190 35 1 4.4578 3.4861 3.7655 36 1 5.8318 2.8909 2.7985 37 1 6.6957 4.0773 4.7532 38 1 5.6981 5.5006 4.3671 39 1 7.8961 4.3474 2.5900 40 1 9.2929 3.8304 5.9583 41 1 7.5292 6.4286 1.2759 42 1 6.1805 6.8616 2.3542 43 1 6.3654 4.3907 0.5696 44 1 5.2751 5.7819 0.3490 45 1 1.1237 1.9322 2.8720 46 1 2.2944 0.6195 2.5989 47 1 2.8595 2.2169 3.1440 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542846920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:02 Heat of formation + Delta-G solvation = -13.494171 kcal Electronic energy + Delta-G solvation = -29329.112699 eV Core-core repulsion = 25447.059155 eV Total energy + Delta-G solvation = -3882.053544 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.55635 -37.66163 -37.01514 -35.48915 -35.21459 -33.37555 -32.70556 -31.05777 -30.79051 -30.04271 -27.88537 -27.26436 -25.70079 -23.70015 -22.45302 -22.25528 -21.24902 -19.70935 -19.42202 -18.29617 -17.44014 -17.02554 -16.20330 -16.11754 -15.59900 -15.36028 -14.70111 -14.52797 -14.13754 -13.88117 -13.57384 -13.46937 -13.43168 -13.31736 -13.08283 -12.79101 -12.71306 -12.66461 -12.59069 -12.23208 -12.14937 -12.02280 -11.80903 -11.78753 -11.41014 -11.30786 -11.28514 -10.91127 -10.80654 -10.59970 -10.45751 -10.30123 -10.01078 -9.53470 -9.29746 -9.19860 -9.13355 -8.91647 -8.36659 -8.19935 -5.98171 -4.03665 0.79671 1.45522 2.17780 2.21861 3.31892 3.38701 3.42043 3.48172 4.06671 4.16770 4.21017 4.45143 4.49367 4.51953 4.67865 4.74404 4.85598 5.10833 5.19247 5.28010 5.29588 5.30669 5.32388 5.53948 5.58353 5.63311 5.69931 5.80085 5.89806 5.94996 6.02707 6.14446 6.17665 6.39165 6.45277 6.51570 6.54560 6.70602 6.79897 7.00280 7.15138 7.28079 7.41675 7.47521 7.75389 8.00591 8.11800 8.46813 9.00029 9.61079 11.07350 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019647 B = 0.003259 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.809297 B = 8589.722579 C = 9145.435192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.120 3.880 3 N -0.362 5.362 4 N -0.300 5.300 5 C 0.164 3.836 6 C -0.107 4.107 7 C -0.818 4.818 8 S 2.718 3.282 9 O -0.966 6.966 10 O -0.964 6.964 11 N -0.989 5.989 12 C 0.118 3.882 13 C -0.121 4.121 14 C 0.050 3.950 15 C -0.510 4.510 16 H 0.055 0.945 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.275 1.275 23 C -0.121 4.121 24 C 0.121 3.879 25 C 0.210 3.790 26 C -0.117 4.117 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.040 0.960 39 H 0.027 0.973 40 H 0.259 0.741 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.099 0.901 46 H 0.079 0.921 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.809 -9.251 -9.775 20.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.001 4.001 3 N -0.140 5.140 4 N -0.120 5.120 5 C -0.005 4.005 6 C -0.166 4.166 7 C -0.915 4.915 8 S 2.807 3.193 9 O -0.956 6.956 10 O -0.955 6.955 11 N -0.829 5.829 12 C -0.006 4.006 13 C -0.160 4.160 14 C 0.032 3.968 15 C -0.549 4.549 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.200 1.200 23 C -0.160 4.160 24 C -0.004 4.004 25 C 0.076 3.924 26 C -0.175 4.175 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.131 0.869 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.059 0.941 39 H 0.045 0.955 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.097 0.903 45 H 0.117 0.883 46 H 0.098 0.902 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.627 -9.709 -10.406 21.136 hybrid contribution 0.929 0.101 0.812 1.238 sum -14.697 -9.608 -9.595 20.010 Atomic orbital electron populations 1.22194 0.93889 1.03333 1.03491 1.21809 0.95569 0.77777 1.04906 1.49074 1.49450 1.12035 1.03472 1.77334 1.23959 1.03782 1.06949 1.21870 0.93671 0.93797 0.91172 1.20772 1.02474 0.94806 0.98524 1.31512 1.32418 1.18815 1.08715 1.01002 0.72317 0.73119 0.72836 1.93518 1.74022 1.86702 1.41369 1.93460 1.85550 1.44657 1.71805 1.57572 1.22673 1.66422 1.36208 1.21635 0.98577 0.94826 0.85587 1.21895 0.95461 0.98570 1.00114 1.18601 0.92363 0.94610 0.91259 1.21235 1.23180 0.97020 1.13419 0.92679 1.24955 0.96825 0.94929 0.97318 1.69844 1.42553 1.11952 1.28790 0.86629 0.80830 0.80300 0.80414 1.20751 1.21372 1.20006 1.21962 0.97137 0.98363 0.98508 1.21534 0.90921 0.96179 0.91741 1.20940 0.90740 0.89340 0.91357 1.20951 1.06047 1.02622 0.87900 0.90161 0.91767 0.91489 0.88287 0.88461 0.89597 0.90348 0.86915 0.90856 0.92452 0.87843 0.94072 0.95509 0.93077 0.92168 0.92693 0.92320 0.90327 0.88266 0.90181 0.87669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.24 37.16 0.38 -0.72 16 2 C 0.12 0.93 6.96 -4.04 -0.03 0.90 16 3 N -0.36 -4.46 3.61 -57.14 -0.21 -4.67 16 4 N -0.30 -4.36 12.58 33.67 0.42 -3.94 16 5 C 0.16 2.42 7.21 -82.40 -0.59 1.82 16 6 C -0.11 -1.32 10.14 36.01 0.37 -0.96 16 7 C -0.82 -12.29 6.17 -40.01 -0.25 -12.54 16 8 S 2.72 45.33 5.68 -107.50 -0.61 44.72 16 9 O -0.97 -17.38 14.37 -57.17 -0.82 -18.21 16 10 O -0.96 -17.29 13.95 -57.17 -0.80 -18.09 16 11 N -0.99 -17.10 3.30 -113.77 -0.37 -17.48 16 12 C 0.12 2.16 6.45 -3.94 -0.03 2.13 16 13 C -0.12 -2.72 5.14 -26.83 -0.14 -2.86 16 14 C 0.05 1.19 2.06 -91.73 -0.19 1.00 16 15 C -0.51 -13.59 8.56 -34.44 -0.29 -13.88 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 18 N -0.89 -24.49 11.31 55.43 0.63 -23.87 16 19 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.12 -2.42 5.30 -26.61 -0.14 -2.56 16 24 C 0.12 2.06 6.48 -3.71 -0.02 2.03 16 25 C 0.21 2.76 6.92 -82.26 -0.57 2.19 16 26 C -0.12 -1.21 9.15 36.01 0.33 -0.88 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.10 0.53 7.05 -51.93 -0.37 0.16 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.11 1.48 5.66 -51.93 -0.29 1.19 16 35 H 0.07 1.22 5.91 -51.93 -0.31 0.91 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.10 2.57 6.03 -51.93 -0.31 2.25 16 38 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.08 1.19 6.92 -51.93 -0.36 0.83 16 45 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.08 0.58 7.08 -51.94 -0.37 0.21 16 47 H 0.10 1.22 5.78 -51.93 -0.30 0.92 16 LS Contribution 378.05 15.07 5.70 5.70 Total: -1.00 -32.55 378.05 -9.70 -42.25 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.34 Total: 0.43 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -1.27 Total: -22.78 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.47 Total: -49.95 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -1.62 Total: -36.29 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 45.33 SS G_CDS: -0.61 Total: 44.72 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.55 -9.70 -42.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542846920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.758 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds