Wall clock time and date at job start Wed Apr 1 2020 00:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47651 * 2 1 4 4 N 1.40085 * 126.03162 * 269.97331 * 3 2 1 5 5 C 1.30839 * 108.19984 * 179.73248 * 4 3 2 6 6 C 1.50704 * 125.89865 * 180.25760 * 5 4 3 7 7 C 1.39877 * 108.20406 * 0.44174 * 5 4 3 8 8 S 1.76196 * 126.03982 * 179.81469 * 7 5 4 9 9 O 1.42099 * 106.40063 * 156.15267 * 8 7 5 10 10 O 1.42097 * 106.40586 * 23.22845 * 8 7 5 11 11 N 1.65608 * 107.21621 * 269.69132 * 8 7 5 12 12 C 1.46924 * 120.63060 * 269.71969 * 11 8 7 13 13 C 1.52758 * 109.00972 * 233.58904 * 12 11 8 14 14 C 1.53044 * 109.38036 * 305.58829 * 13 12 11 15 15 C 1.50703 * 109.45971 * 181.26269 * 14 13 12 16 16 H 1.07995 * 119.99527 * 239.92829 * 15 14 13 17 17 C 1.37869 * 120.00152 * 59.93036 * 15 14 13 18 18 N 1.31517 * 119.99896 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00215 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46943 * 89.99758 * 19 17 15 21 21 H 1.48498 * 109.47619 * 209.99907 * 19 17 15 22 22 H 1.48495 * 109.47197 * 330.00268 * 19 17 15 23 23 C 1.53038 * 109.54298 * 61.23899 * 14 13 12 24 24 C 1.46929 * 120.63014 * 90.00261 * 11 8 7 25 25 C 1.34941 * 126.03631 * 89.99563 * 3 2 1 26 26 C 1.50702 * 126.13040 * 0.02562 * 25 3 2 27 27 H 1.08999 * 109.47280 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47085 * 300.00540 * 1 2 3 29 29 H 1.09006 * 109.46590 * 60.00366 * 1 2 3 30 30 H 1.09001 * 109.47591 * 239.99374 * 2 1 3 31 31 H 1.09006 * 109.46590 * 119.99634 * 2 1 3 32 32 H 1.09003 * 109.46932 * 270.21625 * 6 5 4 33 33 H 1.08991 * 109.46954 * 30.21491 * 6 5 4 34 34 H 1.08995 * 109.46838 * 150.21907 * 6 5 4 35 35 H 1.09001 * 109.58600 * 353.42039 * 12 11 8 36 36 H 1.08999 * 109.58625 * 113.84142 * 12 11 8 37 37 H 1.08995 * 109.56671 * 185.55618 * 13 12 11 38 38 H 1.09003 * 109.36479 * 65.49723 * 13 12 11 39 39 H 1.09004 * 109.45962 * 301.22169 * 14 13 12 40 40 H 0.97005 * 119.99738 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.50225 * 178.68217 * 23 14 13 42 42 H 1.09004 * 109.52031 * 58.59993 * 23 14 13 43 43 H 1.09000 * 109.58507 * 246.15290 * 24 11 8 44 44 H 1.09003 * 109.58672 * 6.43817 * 24 11 8 45 45 H 1.09005 * 109.46817 * 269.97401 * 26 25 3 46 46 H 1.08989 * 109.46890 * 29.97619 * 26 25 3 47 47 H 1.08995 * 109.46987 * 149.98010 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 7 2.2937 2.1579 -1.1329 5 6 2.7033 3.3341 -0.7322 6 6 3.1017 4.4820 -1.6238 7 6 2.7118 3.3408 0.6665 8 16 3.1891 4.6904 1.6939 9 8 2.5412 4.4925 2.9430 10 8 3.0281 5.8662 0.9124 11 7 4.8131 4.5380 1.9801 12 6 5.3009 3.7795 3.1400 13 6 6.2522 4.6613 3.9469 14 6 7.3582 5.1876 3.0293 15 6 8.3152 6.0326 3.8301 16 1 8.4666 7.0699 3.5705 17 6 8.9973 5.4814 4.8939 18 7 8.8132 4.2180 5.2095 19 14 10.1840 6.5286 5.8860 20 1 9.4558 7.1739 7.0080 21 1 11.2678 5.6702 6.4280 22 1 10.7718 7.5746 5.0110 23 6 6.7392 6.0350 1.9153 24 6 5.7935 5.1640 1.0823 25 6 2.2831 2.1297 1.0912 26 6 2.1296 1.6944 2.5258 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.1676 4.4189 -1.8429 33 1 2.5359 4.4327 -2.5540 34 1 2.8897 5.4245 -1.1190 35 1 4.4578 3.4861 3.7655 36 1 5.8318 2.8909 2.7985 37 1 6.6957 4.0773 4.7532 38 1 5.6981 5.5006 4.3671 39 1 7.8961 4.3474 2.5900 40 1 9.2929 3.8304 5.9583 41 1 7.5292 6.4286 1.2759 42 1 6.1805 6.8616 2.3542 43 1 6.3654 4.3907 0.5696 44 1 5.2751 5.7819 0.3490 45 1 1.1237 1.9322 2.8720 46 1 2.2944 0.6195 2.5989 47 1 2.8595 2.2169 3.1440 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542846920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:01 Heat of formation + Delta-G solvation = -34.212608 kcal Electronic energy + Delta-G solvation = -29330.011118 eV Core-core repulsion = 25447.059155 eV Total energy + Delta-G solvation = -3882.951963 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.52879 -39.24891 -38.35893 -36.84469 -36.01301 -35.23398 -33.58713 -32.57535 -31.88157 -31.64642 -28.76702 -28.15966 -27.57658 -24.43280 -24.09827 -23.88791 -22.24989 -21.05349 -20.62554 -19.60873 -18.86431 -18.23045 -18.05594 -17.12230 -16.71435 -16.56347 -16.43377 -15.44949 -15.34396 -15.01241 -14.92631 -14.83854 -14.45230 -14.42066 -14.30882 -14.23058 -14.03277 -13.66065 -13.60908 -13.37148 -13.26736 -13.14297 -12.96320 -12.88109 -12.75734 -12.69636 -12.52745 -12.40897 -12.36724 -12.14190 -12.02543 -11.81494 -11.57535 -11.34280 -10.91823 -10.73657 -10.34612 -10.27318 -10.20814 -9.75490 -8.02668 -6.14997 -0.49388 0.47321 1.13521 1.35458 1.43678 1.45663 1.54338 2.18730 2.47802 2.88305 3.12291 3.23814 3.36272 3.55496 3.82870 3.89450 3.98671 4.00783 4.17309 4.26332 4.37572 4.44767 4.54795 4.55294 4.62372 4.65903 4.70249 4.70445 4.74853 4.82690 4.90032 4.95831 4.98661 5.04179 5.06737 5.14504 5.17237 5.35804 5.39995 5.47191 5.62420 5.71319 5.78142 5.86101 6.08915 6.22779 6.41118 6.47115 6.95644 7.52151 9.00740 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019647 B = 0.003259 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.809297 B = 8589.722579 C = 9145.435192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 N -0.357 5.357 4 N -0.320 5.320 5 C 0.153 3.847 6 C -0.110 4.110 7 C -0.837 4.837 8 S 2.731 3.269 9 O -0.983 6.983 10 O -0.981 6.981 11 N -0.993 5.993 12 C 0.128 3.872 13 C -0.116 4.116 14 C 0.047 3.953 15 C -0.533 4.533 16 H 0.048 0.952 17 C 0.016 3.984 18 N -0.912 5.912 19 Si 0.947 3.053 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.117 4.117 24 C 0.123 3.877 25 C 0.211 3.789 26 C -0.122 4.122 27 H 0.108 0.892 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.106 0.894 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.024 0.976 39 H 0.006 0.994 40 H 0.260 0.740 41 H 0.067 0.933 42 H 0.043 0.957 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.111 0.889 46 H 0.115 0.885 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.682 -10.686 -10.359 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.012 4.012 3 N -0.135 5.135 4 N -0.140 5.140 5 C -0.017 4.017 6 C -0.169 4.169 7 C -0.937 4.937 8 S 2.823 3.177 9 O -0.973 6.973 10 O -0.971 6.971 11 N -0.832 5.832 12 C 0.003 3.997 13 C -0.156 4.156 14 C 0.029 3.971 15 C -0.571 4.571 16 H 0.067 0.933 17 C -0.183 4.183 18 N -0.552 5.552 19 Si 0.774 3.226 20 H -0.206 1.206 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.156 4.156 24 C -0.001 4.001 25 C 0.076 3.924 26 C -0.180 4.180 27 H 0.127 0.873 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.145 0.855 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.043 0.957 39 H 0.024 0.976 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.092 0.908 44 H 0.118 0.882 45 H 0.129 0.871 46 H 0.134 0.866 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.497 -11.127 -10.991 22.733 hybrid contribution 1.145 0.472 0.970 1.573 sum -15.352 -10.655 -10.021 21.205 Atomic orbital electron populations 1.22174 0.92871 1.04882 1.02430 1.22303 0.96424 0.75702 1.06778 1.49435 1.48347 1.13096 1.02595 1.77272 1.24431 1.04013 1.08328 1.22201 0.93713 0.94416 0.91322 1.20852 1.03644 0.93605 0.98768 1.31180 1.34679 1.19155 1.08693 1.00344 0.71685 0.73135 0.72488 1.93490 1.74185 1.87081 1.42569 1.93438 1.85585 1.46064 1.72008 1.57539 1.23092 1.66507 1.36028 1.21435 0.98376 0.94113 0.85768 1.21707 0.95785 0.98270 0.99821 1.18573 0.92319 0.94050 0.92205 1.21614 1.24157 0.97159 1.14165 0.93347 1.25637 0.98339 0.96035 0.98300 1.69959 1.43149 1.12995 1.29105 0.85730 0.78986 0.78933 0.79001 1.20560 1.20927 1.19635 1.21865 0.97835 0.98014 0.97916 1.21546 0.90702 0.96443 0.91444 1.21326 0.89556 0.88876 0.92682 1.21123 1.06304 1.04803 0.85780 0.87297 0.91988 0.93344 0.87539 0.85527 0.88212 0.88841 0.87955 0.89179 0.91433 0.90434 0.95719 0.97628 0.93069 0.91427 0.93777 0.90756 0.88249 0.87068 0.86613 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 10.24 71.98 0.74 -0.94 16 2 C 0.11 1.32 6.96 86.38 0.60 1.92 16 3 N -0.36 -7.97 3.61 -334.68 -1.21 -9.18 16 4 N -0.32 -8.80 12.58 -47.38 -0.60 -9.40 16 5 C 0.15 4.30 7.21 43.10 0.31 4.61 16 6 C -0.11 -2.59 10.14 71.24 0.72 -1.87 16 7 C -0.84 -24.08 6.17 21.99 0.14 -23.94 16 8 S 2.73 89.05 5.68 -56.49 -0.32 88.73 16 9 O -0.98 -34.74 14.37 -128.00 -1.84 -36.58 16 10 O -0.98 -34.64 13.95 -128.00 -1.79 -36.42 16 11 N -0.99 -33.62 3.30 -513.84 -1.69 -35.32 16 12 C 0.13 4.62 6.45 86.22 0.56 5.18 16 13 C -0.12 -5.34 5.14 30.53 0.16 -5.18 16 14 C 0.05 2.28 2.06 -11.51 -0.02 2.25 16 15 C -0.53 -28.94 8.56 25.60 0.22 -28.72 16 16 H 0.05 2.62 7.74 -2.91 -0.02 2.59 16 17 C 0.02 0.84 5.30 84.65 0.45 1.29 16 18 N -0.91 -50.89 11.31 21.44 0.24 -50.65 16 19 Si 0.95 43.32 29.54 68.60 2.03 45.34 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 23 C -0.12 -4.71 5.30 30.67 0.16 -4.55 16 24 C 0.12 4.07 6.48 86.36 0.56 4.63 16 25 C 0.21 5.12 6.92 41.41 0.29 5.41 16 26 C -0.12 -2.21 9.15 71.24 0.65 -1.56 16 27 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.13 0.83 7.05 -2.38 -0.02 0.81 16 32 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.10 2.62 5.66 -2.39 -0.01 2.61 16 35 H 0.09 2.94 5.91 -2.39 -0.01 2.93 16 36 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.08 3.96 6.03 -2.39 -0.01 3.95 16 38 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.26 13.85 8.31 -92.70 -0.77 13.08 16 41 H 0.07 2.56 8.14 -2.39 -0.02 2.55 16 42 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.10 2.88 6.92 -2.39 -0.02 2.86 16 45 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 46 H 0.12 1.20 7.08 -2.39 -0.02 1.19 16 47 H 0.09 1.96 5.78 -2.39 -0.01 1.94 16 Total: -1.00 -70.92 378.05 1.32 -69.60 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.97 Total: 15.34 kcal Atomic # 6 Polarization: -46.99 SS G_CDS: 5.52 Total: -41.46 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -3.26 Total: -104.54 kcal Atomic # 8 Polarization: -69.38 SS G_CDS: -3.62 Total: -73.01 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 89.05 SS G_CDS: -0.32 Total: 88.73 kcal Total: -70.92 1.32 -69.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542846920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.384 kcal (2) G-P(sol) polarization free energy of solvation -70.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds