Wall clock time and date at job start Wed Apr 1 2020 00:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 13 13 C 1.34781 * 119.99874 * 85.00543 * 12 2 1 14 14 O 1.21278 * 120.00033 * 359.97438 * 13 12 2 15 15 C 1.50703 * 120.00101 * 179.97438 * 13 12 2 16 16 C 1.52996 * 109.47006 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47141 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47438 * 180.02562 * 17 16 15 19 19 C 1.53005 * 109.47145 * 180.02562 * 18 17 16 20 20 H 1.08992 * 110.67606 * 54.29434 * 19 18 17 21 21 S 1.83916 * 110.75768 * 291.04535 * 19 18 17 22 22 C 1.83912 * 94.80555 * 207.01384 * 21 19 18 23 23 C 1.54140 * 102.71267 * 34.68939 * 22 21 19 24 24 H 1.08990 * 110.25138 * 211.56355 * 23 22 21 25 25 N 1.47129 * 109.22270 * 90.26180 * 23 22 21 26 26 C 1.34000 * 109.04679 * 239.80317 * 25 23 22 27 27 O 1.21586 * 123.05744 * 179.97438 * 26 25 23 28 28 N 1.33994 * 113.88566 * 0.02562 * 26 25 23 29 29 C 1.47359 * 109.17532 * 359.88343 * 28 26 25 30 30 H 1.09005 * 110.85556 * 241.56208 * 29 28 26 31 31 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 32 32 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 34 34 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 35 35 H 0.97002 * 120.00410 * 264.99761 * 12 2 1 36 36 H 1.09002 * 109.46880 * 299.99754 * 15 13 12 37 37 H 1.09003 * 109.46851 * 59.99965 * 15 13 12 38 38 H 1.09002 * 109.47281 * 299.99730 * 16 15 13 39 39 H 1.08997 * 109.47550 * 59.99777 * 16 15 13 40 40 H 1.09002 * 109.46903 * 300.00493 * 17 16 15 41 41 H 1.08997 * 109.47163 * 59.99439 * 17 16 15 42 42 H 1.09002 * 109.46949 * 299.99608 * 18 17 16 43 43 H 1.09001 * 109.47101 * 59.99534 * 18 17 16 44 44 H 1.08993 * 110.76399 * 152.99161 * 22 21 19 45 45 H 1.08998 * 110.76633 * 276.20328 * 22 21 19 46 46 H 0.97000 * 125.47587 * 59.84044 * 25 23 22 47 47 H 0.96997 * 125.48220 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0183 -2.3572 14 8 1.8583 1.1583 -2.4117 15 6 2.6499 -0.7286 -3.5875 16 6 2.7007 0.2543 -4.7588 17 6 3.2106 -0.4670 -6.0081 18 6 3.2620 0.5161 -7.1794 19 6 3.7713 -0.2054 -8.4288 20 1 3.1703 -1.0914 -8.6334 21 16 5.5467 -0.6496 -8.2469 22 6 5.8963 -0.6297 -10.0523 23 6 4.9856 0.5047 -10.5617 24 1 4.6541 0.2947 -11.5785 25 7 5.7253 1.7758 -10.5193 26 6 5.0792 2.6312 -9.7152 27 8 5.4713 3.7612 -9.4970 28 7 3.9623 2.1275 -9.1727 29 6 3.7775 0.7432 -9.6429 30 1 2.8475 0.6445 -10.2028 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.9040 -0.5274 4.4375 35 1 2.2490 -1.6319 -1.1526 36 1 3.6492 -1.1205 -3.3979 37 1 1.9776 -1.5509 -3.8325 38 1 1.7012 0.6458 -4.9483 39 1 3.3726 1.0769 -4.5141 40 1 4.2099 -0.8589 -5.8189 41 1 2.5383 -1.2893 -6.2527 42 1 2.2628 0.9082 -7.3687 43 1 3.9346 1.3381 -6.9345 44 1 6.9445 -0.3975 -10.2404 45 1 5.6249 -1.5814 -10.5091 46 1 6.5481 1.9646 -10.9971 47 1 3.3679 2.5989 -8.5683 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000557134827.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:29 Heat of formation + Delta-G solvation = -62.161026 kcal Electronic energy + Delta-G solvation = -26884.641238 eV Core-core repulsion = 23000.477340 eV Total energy + Delta-G solvation = -3884.163897 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.76785 -39.11497 -37.59284 -36.21759 -34.99852 -33.98173 -32.62644 -32.33870 -31.12178 -29.84069 -27.94429 -25.67940 -25.14673 -23.43981 -22.44231 -21.41899 -21.04301 -20.57853 -19.50447 -18.61055 -17.29055 -17.17947 -16.68454 -16.40530 -16.07353 -15.85389 -15.62216 -15.40374 -15.07816 -14.52083 -14.40847 -14.27306 -13.79917 -13.50947 -13.31474 -13.08296 -13.00230 -12.86621 -12.79132 -12.19955 -12.16465 -12.00910 -11.80425 -11.44274 -11.24381 -11.14799 -11.11431 -10.78941 -10.70048 -10.60072 -10.48465 -10.17559 -9.73978 -9.69265 -9.50364 -9.21404 -9.06998 -8.74208 -8.15042 -8.11378 -6.19796 -4.22061 1.23337 1.70379 2.30089 2.74862 3.23861 3.30498 3.34484 3.36469 3.41479 3.53106 3.68281 3.94646 4.09279 4.20664 4.32971 4.43143 4.54642 4.65958 4.83203 4.86283 4.92224 4.98560 5.11555 5.14962 5.20855 5.29485 5.41511 5.48881 5.70988 5.73313 5.85623 5.89882 6.22740 6.32442 6.36995 6.39759 6.54214 6.57852 6.68848 6.87653 6.92782 7.21695 7.33258 7.54987 8.18104 8.22008 8.56782 8.77747 8.99557 9.41519 10.92420 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.001818 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.296788 B =15395.750395 C =15865.966830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.235 3.765 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.080 0.920 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.704 5.704 13 C 0.500 3.500 14 O -0.559 6.559 15 C -0.141 4.141 16 C -0.101 4.101 17 C -0.118 4.118 18 C -0.104 4.104 19 C -0.049 4.049 20 H 0.111 0.889 21 S -0.257 6.257 22 C -0.091 4.091 23 C 0.124 3.876 24 H 0.107 0.893 25 N -0.733 5.733 26 C 0.705 3.295 27 O -0.582 6.582 28 N -0.728 5.728 29 C 0.124 3.876 30 H 0.110 0.890 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.267 0.733 35 H 0.395 0.605 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.113 0.887 45 H 0.104 0.896 46 H 0.431 0.569 47 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.356 -3.776 -33.920 34.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.131 3.869 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.098 0.902 6 C -0.127 4.127 7 N -0.530 5.530 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.187 1.187 12 N -0.352 5.352 13 C 0.286 3.714 14 O -0.439 6.439 15 C -0.181 4.181 16 C -0.139 4.139 17 C -0.156 4.156 18 C -0.142 4.142 19 C -0.179 4.179 20 H 0.129 0.871 21 S -0.030 6.030 22 C -0.241 4.241 23 C 0.016 3.984 24 H 0.124 0.876 25 N -0.396 5.396 26 C 0.404 3.596 27 O -0.460 6.460 28 N -0.391 5.391 29 C 0.015 3.985 30 H 0.127 0.873 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.228 0.772 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.131 0.869 45 H 0.122 0.878 46 H 0.273 0.727 47 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 4.068 -2.581 -32.633 32.987 hybrid contribution -1.073 0.398 -0.591 1.288 sum 2.995 -2.183 -33.224 33.430 Atomic orbital electron populations 1.22439 0.99401 1.00747 0.99231 1.19082 0.90079 0.94684 0.83014 0.93487 1.21054 1.33185 1.14385 0.88589 0.90237 1.24848 0.95544 0.96732 0.95551 1.69871 1.44951 1.40146 0.98027 0.86859 0.80469 0.83624 0.77430 1.20338 1.22161 1.18679 1.46222 1.65219 1.13816 1.09943 1.20597 0.78332 0.87534 0.84950 1.90642 1.51549 1.16295 1.85402 1.21667 1.02876 0.99627 0.93952 1.21281 1.02462 0.97853 0.92306 1.21634 1.01954 0.97904 0.94118 1.21528 1.01723 0.99088 0.91894 1.24474 0.94986 1.00694 0.97744 0.87133 1.88509 1.12244 1.92811 1.09440 1.24629 1.03846 1.00861 0.94726 1.22402 0.90303 0.85265 1.00470 0.87572 1.45254 1.29130 1.13319 1.51873 1.15884 0.80714 0.84108 0.78879 1.91027 1.70355 1.18052 1.66528 1.45340 1.27466 1.13989 1.52293 1.22525 0.98893 0.83572 0.93477 0.87277 0.94621 0.92887 0.93525 0.92312 0.77205 0.89330 0.89491 0.91281 0.91153 0.91390 0.91686 0.90276 0.89995 0.86852 0.87760 0.72696 0.72267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 8.96 37.16 0.33 -3.29 16 2 C 0.24 5.69 2.15 -69.08 -0.15 5.54 16 3 H 0.05 1.27 6.63 -51.93 -0.34 0.92 16 4 C -0.53 -14.61 9.31 -34.44 -0.32 -14.93 16 5 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -26.68 13.96 55.43 0.77 -25.90 16 8 Si 0.89 22.08 24.37 -169.99 -4.14 17.94 16 9 H -0.28 -6.64 6.87 56.52 0.39 -6.26 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.26 -6.52 6.53 56.52 0.37 -6.15 16 12 N -0.70 -14.00 5.07 -54.93 -0.28 -14.28 16 13 C 0.50 9.28 7.79 -10.98 -0.09 9.19 16 14 O -0.56 -12.54 15.64 5.56 0.09 -12.45 16 15 C -0.14 -1.79 5.70 -27.88 -0.16 -1.94 16 16 C -0.10 -1.16 4.50 -26.73 -0.12 -1.28 16 17 C -0.12 -0.97 5.10 -26.73 -0.14 -1.11 16 18 C -0.10 -0.69 3.66 -26.73 -0.10 -0.79 16 19 C -0.05 -0.24 3.22 -26.17 -0.08 -0.33 16 20 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 21 S -0.26 -1.89 21.89 -107.50 -2.35 -4.25 16 22 C -0.09 -0.32 7.10 37.75 0.27 -0.05 16 23 C 0.12 0.40 4.16 -66.66 -0.28 0.12 16 24 H 0.11 0.07 8.14 -51.93 -0.42 -0.35 16 25 N -0.73 -4.31 5.94 -57.79 -0.34 -4.65 16 26 C 0.71 6.90 8.92 -88.31 -0.79 6.11 16 27 O -0.58 -8.68 18.05 5.29 0.10 -8.59 16 28 N -0.73 -4.95 4.87 -57.66 -0.28 -5.23 16 29 C 0.12 0.48 4.04 -66.57 -0.27 0.21 16 30 H 0.11 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 34 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.39 6.85 8.54 -40.82 -0.35 6.50 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 39 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 40 H 0.07 0.63 7.43 -51.93 -0.39 0.24 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.70 7.25 -51.93 -0.38 0.33 16 44 H 0.11 0.38 8.07 -51.93 -0.42 -0.04 16 45 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.43 1.92 8.96 -40.82 -0.37 1.55 16 47 H 0.43 2.78 7.96 -40.82 -0.33 2.46 16 LS Contribution 382.39 15.07 5.76 5.76 Total: -1.00 -37.27 382.39 -10.07 -47.34 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.40 Total: 4.76 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -1.98 Total: -0.45 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.13 Total: -50.06 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: 0.18 Total: -21.04 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.14 Total: 17.94 kcal Atomic # 16 Polarization: -1.89 SS G_CDS: -2.35 Total: -4.25 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.27 -10.07 -47.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557134827.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.824 kcal (2) G-P(sol) polarization free energy of solvation -37.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds