Wall clock time and date at job start Wed Apr 1 2020 00:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 13 13 C 1.34781 * 119.99874 * 85.00543 * 12 2 1 14 14 O 1.21278 * 120.00033 * 359.97438 * 13 12 2 15 15 C 1.50703 * 120.00101 * 179.97438 * 13 12 2 16 16 C 1.52996 * 109.47006 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47141 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47438 * 180.02562 * 17 16 15 19 19 C 1.53005 * 109.47145 * 180.02562 * 18 17 16 20 20 H 1.08992 * 110.67606 * 54.29434 * 19 18 17 21 21 S 1.83916 * 110.75768 * 291.04535 * 19 18 17 22 22 C 1.83912 * 94.80555 * 207.01384 * 21 19 18 23 23 C 1.54140 * 102.71267 * 34.68939 * 22 21 19 24 24 H 1.08990 * 110.25138 * 211.56355 * 23 22 21 25 25 N 1.47129 * 109.22270 * 90.26180 * 23 22 21 26 26 C 1.34000 * 109.04679 * 239.80317 * 25 23 22 27 27 O 1.21586 * 123.05744 * 179.97438 * 26 25 23 28 28 N 1.33994 * 113.88566 * 0.02562 * 26 25 23 29 29 C 1.47359 * 109.17532 * 359.88343 * 28 26 25 30 30 H 1.09005 * 110.85556 * 241.56208 * 29 28 26 31 31 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 32 32 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 34 34 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 35 35 H 0.97002 * 120.00410 * 264.99761 * 12 2 1 36 36 H 1.09002 * 109.46880 * 299.99754 * 15 13 12 37 37 H 1.09003 * 109.46851 * 59.99965 * 15 13 12 38 38 H 1.09002 * 109.47281 * 299.99730 * 16 15 13 39 39 H 1.08997 * 109.47550 * 59.99777 * 16 15 13 40 40 H 1.09002 * 109.46903 * 300.00493 * 17 16 15 41 41 H 1.08997 * 109.47163 * 59.99439 * 17 16 15 42 42 H 1.09002 * 109.46949 * 299.99608 * 18 17 16 43 43 H 1.09001 * 109.47101 * 59.99534 * 18 17 16 44 44 H 1.08993 * 110.76399 * 152.99161 * 22 21 19 45 45 H 1.08998 * 110.76633 * 276.20328 * 22 21 19 46 46 H 0.97000 * 125.47587 * 59.84044 * 25 23 22 47 47 H 0.96997 * 125.48220 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0183 -2.3572 14 8 1.8583 1.1583 -2.4117 15 6 2.6499 -0.7286 -3.5875 16 6 2.7007 0.2543 -4.7588 17 6 3.2106 -0.4670 -6.0081 18 6 3.2620 0.5161 -7.1794 19 6 3.7713 -0.2054 -8.4288 20 1 3.1703 -1.0914 -8.6334 21 16 5.5467 -0.6496 -8.2469 22 6 5.8963 -0.6297 -10.0523 23 6 4.9856 0.5047 -10.5617 24 1 4.6541 0.2947 -11.5785 25 7 5.7253 1.7758 -10.5193 26 6 5.0792 2.6312 -9.7152 27 8 5.4713 3.7612 -9.4970 28 7 3.9623 2.1275 -9.1727 29 6 3.7775 0.7432 -9.6429 30 1 2.8475 0.6445 -10.2028 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.9040 -0.5274 4.4375 35 1 2.2490 -1.6319 -1.1526 36 1 3.6492 -1.1205 -3.3979 37 1 1.9776 -1.5509 -3.8325 38 1 1.7012 0.6458 -4.9483 39 1 3.3726 1.0769 -4.5141 40 1 4.2099 -0.8589 -5.8189 41 1 2.5383 -1.2893 -6.2527 42 1 2.2628 0.9082 -7.3687 43 1 3.9346 1.3381 -6.9345 44 1 6.9445 -0.3975 -10.2404 45 1 5.6249 -1.5814 -10.5091 46 1 6.5481 1.9646 -10.9971 47 1 3.3679 2.5989 -8.5683 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000557134827.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:29 Heat of formation + Delta-G solvation = -92.146661 kcal Electronic energy + Delta-G solvation = -26885.941513 eV Core-core repulsion = 23000.477340 eV Total energy + Delta-G solvation = -3885.464172 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.27231 -40.66116 -38.29828 -37.16791 -36.56762 -34.63216 -34.39073 -33.26008 -32.11786 -31.19921 -28.61102 -27.23980 -26.25787 -24.21572 -23.18911 -22.53593 -21.70413 -21.47165 -21.08566 -19.10316 -19.03455 -17.79130 -17.66172 -17.32289 -17.18503 -16.94306 -16.82819 -16.14918 -16.03209 -15.72324 -15.47508 -15.01131 -14.96610 -14.78710 -14.28720 -14.17778 -14.06180 -13.94576 -13.74866 -13.46409 -13.21244 -13.10133 -12.89185 -12.78432 -12.58104 -12.15588 -12.02208 -11.98644 -11.87982 -11.63602 -11.50709 -11.42183 -11.29059 -11.06682 -10.89001 -10.66304 -10.30139 -9.91974 -9.85068 -8.66782 -8.39894 -6.45549 0.86324 1.25049 1.33800 1.36788 1.43333 1.81829 1.82144 2.09334 2.24488 2.52442 2.96159 2.98360 3.22432 3.34061 3.70097 3.81676 3.93494 4.06544 4.07581 4.17322 4.29838 4.38687 4.44202 4.53710 4.55705 4.63794 4.64934 4.70380 4.72814 4.79218 4.83669 4.85774 4.94838 5.00008 5.03536 5.21209 5.32331 5.40570 5.43147 5.50684 5.67605 5.97058 6.13320 6.24970 6.38551 6.56323 6.91350 7.18257 7.50279 7.57960 8.75333 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.001818 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.296788 B =15395.750395 C =15865.966830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.239 3.761 3 H 0.017 0.983 4 C -0.533 4.533 5 H 0.057 0.943 6 C 0.027 3.973 7 N -0.933 5.933 8 Si 0.940 3.060 9 H -0.257 1.257 10 H -0.292 1.292 11 H -0.266 1.266 12 N -0.705 5.705 13 C 0.496 3.504 14 O -0.601 6.601 15 C -0.129 4.129 16 C -0.097 4.097 17 C -0.107 4.107 18 C -0.103 4.103 19 C -0.028 4.028 20 H 0.139 0.861 21 S -0.352 6.352 22 C -0.069 4.069 23 C 0.125 3.875 24 H 0.149 0.851 25 N -0.725 5.725 26 C 0.693 3.307 27 O -0.647 6.647 28 N -0.725 5.725 29 C 0.122 3.878 30 H 0.149 0.851 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.039 0.961 34 H 0.270 0.730 35 H 0.408 0.592 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.064 0.936 39 H 0.040 0.960 40 H 0.056 0.944 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.054 0.946 44 H 0.112 0.888 45 H 0.134 0.866 46 H 0.436 0.564 47 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.613 -5.506 -37.163 37.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.134 3.866 3 H 0.035 0.965 4 C -0.571 4.571 5 H 0.075 0.925 6 C -0.173 4.173 7 N -0.572 5.572 8 Si 0.768 3.232 9 H -0.183 1.183 10 H -0.220 1.220 11 H -0.191 1.191 12 N -0.354 5.354 13 C 0.284 3.716 14 O -0.483 6.483 15 C -0.169 4.169 16 C -0.135 4.135 17 C -0.144 4.144 18 C -0.141 4.141 19 C -0.157 4.157 20 H 0.157 0.843 21 S -0.125 6.125 22 C -0.218 4.218 23 C 0.018 3.982 24 H 0.167 0.833 25 N -0.387 5.387 26 C 0.392 3.608 27 O -0.530 6.530 28 N -0.386 5.386 29 C 0.015 3.985 30 H 0.167 0.833 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.243 0.757 36 H 0.122 0.878 37 H 0.140 0.860 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.073 0.927 44 H 0.131 0.869 45 H 0.152 0.848 46 H 0.279 0.721 47 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 2.319 -4.402 -35.915 36.258 hybrid contribution -0.456 0.866 0.385 1.052 sum 1.863 -3.536 -35.530 35.754 Atomic orbital electron populations 1.22318 0.97721 1.01718 0.99347 1.18739 0.91327 0.92991 0.83578 0.96538 1.21276 1.32307 1.13556 0.89975 0.92500 1.25582 0.96928 0.99370 0.95409 1.69976 1.46663 1.41922 0.98634 0.85985 0.79899 0.80298 0.77058 1.18276 1.21958 1.19088 1.46107 1.65536 1.14433 1.09308 1.21631 0.76992 0.87160 0.85822 1.90622 1.53194 1.18379 1.86100 1.21712 1.04061 1.00083 0.91001 1.21245 1.01631 0.97129 0.93499 1.21521 1.01595 0.98396 0.92911 1.21463 1.02139 0.98139 0.92387 1.24490 0.92606 1.01530 0.97077 0.84308 1.88884 1.15941 1.93107 1.14607 1.24729 1.04028 1.02341 0.90681 1.22744 0.89518 0.83530 1.02406 0.83349 1.45272 1.29114 1.13746 1.50562 1.16249 0.81459 0.83754 0.79348 1.90967 1.72130 1.21038 1.68859 1.45381 1.26404 1.15234 1.51615 1.22906 1.00956 0.81263 0.93371 0.83341 0.93581 0.91457 0.94249 0.92043 0.75675 0.87840 0.86008 0.91755 0.94103 0.92510 0.89269 0.88486 0.92745 0.86932 0.84828 0.72131 0.72410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.71 8.96 71.98 0.65 -6.06 16 2 C 0.24 11.55 2.15 44.25 0.10 11.64 16 3 H 0.02 0.91 6.63 -2.39 -0.02 0.90 16 4 C -0.53 -29.48 9.31 25.60 0.24 -29.24 16 5 H 0.06 3.33 7.98 -2.91 -0.02 3.31 16 6 C 0.03 1.54 5.45 84.65 0.46 2.00 16 7 N -0.93 -56.49 13.96 21.45 0.30 -56.19 16 8 Si 0.94 45.57 24.37 68.60 1.67 47.24 16 9 H -0.26 -11.61 6.87 99.48 0.68 -10.92 16 10 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 11 H -0.27 -12.97 6.53 99.48 0.65 -12.32 16 12 N -0.70 -27.58 5.07 -446.09 -2.26 -29.84 16 13 C 0.50 18.02 7.79 87.66 0.68 18.71 16 14 O -0.60 -27.11 15.64 -3.02 -0.05 -27.16 16 15 C -0.13 -3.01 5.70 29.85 0.17 -2.84 16 16 C -0.10 -2.12 4.50 30.59 0.14 -1.99 16 17 C -0.11 -1.52 5.10 30.59 0.16 -1.36 16 18 C -0.10 -1.17 3.66 30.60 0.11 -1.06 16 19 C -0.03 -0.19 3.22 30.96 0.10 -0.09 16 20 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 21 S -0.35 -4.70 21.89 -56.49 -1.24 -5.94 16 22 C -0.07 -0.26 7.10 72.37 0.51 0.25 16 23 C 0.12 0.33 4.16 45.47 0.19 0.52 16 24 H 0.15 -0.68 8.14 -2.39 -0.02 -0.70 16 25 N -0.72 -7.43 5.94 -455.44 -2.71 -10.14 16 26 C 0.69 13.48 8.92 179.54 1.60 15.09 16 27 O -0.65 -20.37 18.05 -3.99 -0.07 -20.44 16 28 N -0.72 -9.01 4.87 -455.05 -2.22 -11.22 16 29 C 0.12 0.51 4.04 45.41 0.18 0.69 16 30 H 0.15 -0.40 8.14 -2.38 -0.02 -0.42 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.04 1.77 3.27 -2.39 -0.01 1.76 16 34 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 35 H 0.41 13.73 8.54 -92.71 -0.79 12.93 16 36 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 39 H 0.04 1.12 8.10 -2.39 -0.02 1.10 16 40 H 0.06 0.97 7.43 -2.39 -0.02 0.96 16 41 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.05 0.95 7.25 -2.39 -0.02 0.93 16 44 H 0.11 0.49 8.07 -2.39 -0.02 0.47 16 45 H 0.13 -0.21 8.14 -2.39 -0.02 -0.22 16 46 H 0.44 3.43 8.96 -92.71 -0.83 2.60 16 47 H 0.43 5.38 7.96 -92.71 -0.74 4.64 16 Total: -1.00 -86.32 382.39 -2.71 -89.03 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -1.43 Total: 18.39 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 5.29 Total: 6.26 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -6.89 Total: -107.39 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -0.12 Total: -47.60 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.67 Total: 47.24 kcal Atomic # 16 Polarization: -4.70 SS G_CDS: -1.24 Total: -5.94 kcal Total: -86.32 -2.71 -89.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557134827.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.114 kcal (2) G-P(sol) polarization free energy of solvation -86.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds