Wall clock time and date at job start Wed Apr 1 2020 00:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46607 * 2 1 4 4 N 1.46497 * 109.47053 * 119.99757 * 2 1 3 5 5 C 1.46508 * 120.00288 * 305.13642 * 4 2 1 6 6 C 1.50693 * 109.47062 * 87.29835 * 5 4 2 7 7 C 1.38225 * 119.61860 * 94.07519 * 6 5 4 8 8 C 1.38629 * 119.16425 * 179.75414 * 7 6 5 9 9 C 1.38673 * 118.41789 * 0.50956 * 8 7 6 10 10 C 1.38176 * 119.16124 * 359.73316 * 9 8 7 11 11 N 1.31858 * 119.62071 * 274.34688 * 6 5 4 12 12 S 1.65603 * 119.99986 * 125.14027 * 4 2 1 13 13 O 1.42108 * 106.39878 * 331.28938 * 12 4 2 14 14 O 1.42099 * 106.40059 * 198.37409 * 12 4 2 15 15 N 1.65596 * 107.22104 * 84.83141 * 12 4 2 16 16 C 1.46498 * 119.99984 * 274.85578 * 15 12 4 17 17 C 1.46499 * 119.99999 * 94.85003 * 15 12 4 18 18 H 1.09002 * 109.47211 * 4.96722 * 17 15 12 19 19 C 1.52995 * 109.47240 * 244.96891 * 17 15 12 20 20 C 1.50705 * 109.47056 * 124.96790 * 17 15 12 21 21 H 1.08001 * 119.99881 * 359.97438 * 20 17 15 22 22 C 1.37873 * 119.99894 * 180.02562 * 20 17 15 23 23 N 1.31514 * 120.00059 * 0.02562 * 22 20 17 24 24 Si 1.86797 * 119.99895 * 179.97438 * 22 20 17 25 25 H 1.48500 * 109.47353 * 270.00342 * 24 22 20 26 26 H 1.48506 * 109.47014 * 30.00351 * 24 22 20 27 27 H 1.48500 * 109.47104 * 149.99806 * 24 22 20 28 28 H 1.09000 * 109.47689 * 305.90784 * 1 2 3 29 29 H 1.09001 * 109.47574 * 65.91597 * 1 2 3 30 30 H 1.09006 * 109.47334 * 185.91072 * 1 2 3 31 31 H 1.08999 * 109.46994 * 240.00016 * 2 1 3 32 32 H 1.09002 * 109.47175 * 184.91363 * 3 2 1 33 33 H 1.09002 * 109.47221 * 304.91340 * 3 2 1 34 34 H 1.09006 * 109.47647 * 64.91766 * 3 2 1 35 35 H 1.09000 * 109.47131 * 207.30444 * 5 4 2 36 36 H 1.09001 * 109.46468 * 327.29950 * 5 4 2 37 37 H 1.08004 * 120.41724 * 359.97438 * 7 6 5 38 38 H 1.08000 * 120.78996 * 180.26281 * 8 7 6 39 39 H 1.08004 * 120.41655 * 179.70659 * 9 8 7 40 40 H 1.08005 * 119.61728 * 180.02562 * 10 9 8 41 41 H 1.09002 * 109.47055 * 269.99871 * 16 15 12 42 42 H 1.08996 * 109.47341 * 29.99382 * 16 15 12 43 43 H 1.08996 * 109.47237 * 150.00043 * 16 15 12 44 44 H 1.09002 * 109.47352 * 54.78236 * 19 17 15 45 45 H 1.08999 * 109.47292 * 174.78233 * 19 17 15 46 46 H 1.08996 * 109.47263 * 294.78248 * 19 17 15 47 47 H 0.97001 * 119.99689 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.5740 -0.2590 2.5239 6 6 0.2900 -0.9639 2.8777 7 6 0.3331 -2.1339 3.6125 8 6 -0.8541 -2.7719 3.9371 9 6 -2.0451 -2.2124 3.4993 10 6 -2.0095 -1.0430 2.7642 11 7 -0.8613 -0.4605 2.4781 12 16 3.0725 -1.9590 1.0476 13 8 2.8023 -2.5599 -0.2115 14 8 3.0191 -2.6711 2.2761 15 7 4.5967 -1.3200 0.9434 16 6 5.1203 -0.8822 -0.3529 17 6 5.4214 -1.1924 2.1474 18 1 4.9038 -1.6469 2.9922 19 6 5.6719 0.2883 2.4395 20 6 6.7387 -1.8915 1.9304 21 1 6.9411 -2.3822 0.9898 22 6 7.6850 -1.9057 2.9330 23 7 7.4379 -1.3095 4.0789 24 14 9.3176 -2.7728 2.6642 25 1 9.2021 -4.1897 3.0935 26 1 9.6751 -2.7196 1.2238 27 1 10.3734 -2.0984 3.4615 28 1 -0.3634 0.6027 0.8323 29 1 -0.3634 0.4194 -0.9382 30 1 -0.3634 -1.0222 0.1058 31 1 1.8933 -0.5138 -0.8900 32 1 3.1263 1.4439 -0.0880 33 1 1.6064 1.9811 -0.8427 34 1 1.7502 1.9304 0.9308 35 1 2.3387 -0.5051 3.2607 36 1 1.4077 0.8183 2.5189 37 1 1.2795 -2.5439 3.9328 38 1 -0.8513 -3.6851 4.5137 39 1 -2.9885 -2.6850 3.7297 40 1 -2.9327 -0.6006 2.4199 41 1 5.6330 -1.7133 -0.8371 42 1 4.2966 -0.5468 -0.9830 43 1 5.8210 -0.0608 -0.2031 44 1 4.7183 0.8122 2.5047 45 1 6.2060 0.3870 3.3845 46 1 6.2699 0.7208 1.6374 47 1 8.1039 -1.3192 4.7841 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558690241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:07 Heat of formation + Delta-G solvation = -48.006380 kcal Electronic energy + Delta-G solvation = -30059.886742 eV Core-core repulsion = 26176.336636 eV Total energy + Delta-G solvation = -3883.550106 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.20857 -38.52486 -38.29756 -37.85751 -36.88784 -34.51448 -33.69608 -33.35681 -31.40221 -30.92580 -27.91197 -27.45109 -27.20135 -27.02653 -24.37798 -23.28654 -22.63960 -21.76696 -19.80551 -18.99341 -18.62732 -18.13714 -17.88516 -17.09290 -17.00172 -16.63228 -16.39112 -15.96003 -15.22874 -15.09121 -15.06491 -14.84887 -14.67328 -14.50368 -14.10801 -13.99564 -13.77054 -13.55000 -13.39413 -13.33512 -13.15676 -13.04408 -12.97993 -12.79315 -12.69086 -12.64874 -12.63858 -12.29862 -12.18622 -12.11576 -12.07247 -11.89148 -11.64856 -11.10905 -10.74181 -10.51268 -10.39730 -10.02060 -9.94749 -9.63396 -8.11287 -6.23851 -0.43930 0.19329 0.38725 1.42131 1.44260 1.53087 1.99830 2.41868 2.52516 2.92955 3.17759 3.33004 3.34840 3.67395 3.87659 4.05563 4.08890 4.19843 4.26050 4.28136 4.32143 4.43017 4.55651 4.66477 4.71250 4.74279 4.79435 4.88315 4.93304 4.95030 5.01189 5.04963 5.13359 5.15539 5.17782 5.22140 5.26666 5.34385 5.50391 5.59564 5.63883 5.65349 5.82464 5.88781 5.90376 6.14888 6.31879 6.83505 7.04347 7.44832 8.93269 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.004116 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.208879 B = 6801.270703 C = 7552.118415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 C -0.156 4.156 4 N -0.987 5.987 5 C 0.176 3.824 6 C 0.090 3.910 7 C -0.178 4.178 8 C -0.088 4.088 9 C -0.164 4.164 10 C 0.083 3.917 11 N -0.470 5.470 12 S 2.782 3.218 13 O -1.015 7.015 14 O -1.002 7.002 15 N -0.995 5.995 16 C 0.106 3.894 17 C 0.272 3.728 18 H 0.030 0.970 19 C -0.130 4.130 20 C -0.539 4.539 21 H 0.055 0.945 22 C 0.021 3.979 23 N -0.911 5.911 24 Si 0.952 3.048 25 H -0.283 1.283 26 H -0.268 1.268 27 H -0.279 1.279 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.117 0.883 37 H 0.126 0.874 38 H 0.151 0.849 39 H 0.168 0.832 40 H 0.187 0.813 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.038 0.962 45 H 0.063 0.937 46 H 0.039 0.961 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.905 6.096 -4.136 19.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.029 3.971 3 C -0.215 4.215 4 N -0.827 5.827 5 C 0.050 3.950 6 C -0.048 4.048 7 C -0.199 4.199 8 C -0.114 4.114 9 C -0.184 4.184 10 C -0.075 4.075 11 N -0.180 5.180 12 S 2.794 3.206 13 O -0.998 6.998 14 O -0.986 6.986 15 N -0.836 5.836 16 C -0.039 4.039 17 C 0.168 3.832 18 H 0.048 0.952 19 C -0.190 4.190 20 C -0.578 4.578 21 H 0.073 0.927 22 C -0.179 4.179 23 N -0.550 5.550 24 Si 0.778 3.222 25 H -0.209 1.209 26 H -0.192 1.192 27 H -0.204 1.204 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.135 0.865 37 H 0.144 0.856 38 H 0.169 0.831 39 H 0.185 0.815 40 H 0.204 0.796 41 H 0.057 0.943 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.057 0.943 45 H 0.082 0.918 46 H 0.058 0.942 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.012 5.981 -4.503 19.506 hybrid contribution 1.393 -1.379 0.681 2.075 sum -16.619 4.601 -3.822 17.663 Atomic orbital electron populations 1.22303 0.93031 1.01520 1.04092 1.21133 0.96541 0.94357 0.85105 1.22147 1.01419 0.94305 1.03613 1.57995 1.59982 1.52631 1.12065 1.20043 0.91301 1.00910 0.82792 1.21577 0.94697 0.93695 0.94871 1.22376 1.00622 0.96769 1.00126 1.21943 0.92118 0.99906 0.97452 1.22520 0.99738 0.97351 0.98749 1.23374 0.96512 0.93033 0.94533 1.67532 0.98165 1.33507 1.18798 1.01674 0.72844 0.74070 0.72008 1.93493 1.85515 1.75460 1.45355 1.93506 1.87001 1.71329 1.46776 1.57640 1.30807 1.79992 1.15205 1.21297 0.99929 1.00118 0.82599 1.18453 0.89379 0.94351 0.81053 0.95233 1.21879 0.99087 0.96112 1.01919 1.21617 1.00896 1.34747 1.00588 0.92708 1.25580 1.01497 0.95992 0.94835 1.69982 1.36030 1.44023 1.04997 0.85653 0.79719 0.78442 0.78396 1.20877 1.19236 1.20384 0.88265 0.90794 0.95556 0.90165 0.92595 0.89491 0.91390 0.89725 0.86454 0.85584 0.83123 0.81475 0.79577 0.94333 0.90705 0.90223 0.94330 0.91790 0.94233 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 7.58 71.98 0.55 -2.91 16 2 C 0.13 3.41 3.25 44.99 0.15 3.56 16 3 C -0.16 -3.13 9.32 71.98 0.67 -2.46 16 4 N -0.99 -30.69 2.77 -497.42 -1.38 -32.07 16 5 C 0.18 5.08 5.08 85.63 0.44 5.51 16 6 C 0.09 2.57 5.87 42.55 0.25 2.82 16 7 C -0.18 -5.31 9.26 22.36 0.21 -5.10 16 8 C -0.09 -2.01 10.18 22.47 0.23 -1.79 16 9 C -0.16 -2.88 10.11 22.36 0.23 -2.65 16 10 C 0.08 1.56 11.18 84.67 0.95 2.50 16 11 N -0.47 -11.40 6.49 -183.89 -1.19 -12.60 16 12 S 2.78 112.68 6.00 -56.49 -0.34 112.34 16 13 O -1.01 -44.25 16.07 -128.00 -2.06 -46.30 16 14 O -1.00 -46.40 13.74 -128.00 -1.76 -48.16 16 15 N -0.99 -41.44 3.12 -520.46 -1.62 -43.07 16 16 C 0.11 3.76 9.33 127.77 1.19 4.95 16 17 C 0.27 13.27 2.67 44.25 0.12 13.39 16 18 H 0.03 1.64 6.73 -2.39 -0.02 1.62 16 19 C -0.13 -5.75 8.86 71.98 0.64 -5.11 16 20 C -0.54 -29.11 8.31 25.60 0.21 -28.90 16 21 H 0.05 2.96 7.37 -2.91 -0.02 2.94 16 22 C 0.02 1.14 5.30 84.65 0.45 1.59 16 23 N -0.91 -50.71 11.38 21.45 0.24 -50.47 16 24 Si 0.95 43.17 29.54 68.60 2.03 45.20 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 28 H 0.10 2.20 5.61 -2.39 -0.01 2.19 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.03 0.70 7.77 -2.38 -0.02 0.68 16 31 H 0.08 2.20 6.98 -2.39 -0.02 2.18 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.29 6.71 -2.38 -0.02 1.28 16 35 H 0.08 2.70 7.46 -2.39 -0.02 2.68 16 36 H 0.12 2.79 6.63 -2.39 -0.02 2.78 16 37 H 0.13 4.35 6.89 -2.91 -0.02 4.33 16 38 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 39 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 40 H 0.19 2.10 8.06 -2.91 -0.02 2.07 16 41 H 0.04 1.41 8.02 -2.39 -0.02 1.40 16 42 H 0.07 2.17 7.91 -2.39 -0.02 2.15 16 43 H 0.08 2.68 6.80 -2.39 -0.02 2.67 16 44 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.06 3.16 6.23 -2.39 -0.01 3.15 16 46 H 0.04 1.65 7.06 -2.39 -0.02 1.64 16 47 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -69.00 379.95 1.15 -67.85 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.96 Total: 21.86 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: 6.27 Total: -14.59 kcal Atomic # 7 Polarization: -134.25 SS G_CDS: -3.95 Total: -138.20 kcal Atomic # 8 Polarization: -90.65 SS G_CDS: -3.82 Total: -94.46 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 112.68 SS G_CDS: -0.34 Total: 112.34 kcal Total: -69.00 1.15 -67.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558690241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.842 kcal (2) G-P(sol) polarization free energy of solvation -68.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds