Wall clock time and date at job start Wed Apr 1 2020 00:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46823 * 2 1 4 4 N 1.46499 * 109.46743 * 119.99137 * 2 1 3 5 5 C 1.46498 * 120.00715 * 306.09570 * 4 2 1 6 6 C 1.50701 * 109.47011 * 272.59827 * 5 4 2 7 7 C 1.38221 * 119.62180 * 96.04502 * 6 5 4 8 8 C 1.38630 * 119.16464 * 179.74474 * 7 6 5 9 9 C 1.38678 * 118.41466 * 0.47595 * 8 7 6 10 10 C 1.38173 * 119.16471 * 359.50387 * 9 8 7 11 11 N 1.31855 * 119.61413 * 276.01967 * 6 5 4 12 12 S 1.65611 * 119.99760 * 126.09145 * 4 2 1 13 13 O 1.42091 * 106.39813 * 23.54188 * 12 4 2 14 14 O 1.42095 * 106.40110 * 156.46403 * 12 4 2 15 15 N 1.65600 * 107.21968 * 270.00229 * 12 4 2 16 16 C 1.46496 * 119.99938 * 270.00270 * 15 12 4 17 17 C 1.46499 * 119.99900 * 89.99667 * 15 12 4 18 18 H 1.08998 * 109.47440 * 0.02562 * 17 15 12 19 19 C 1.53002 * 109.47174 * 120.00231 * 17 15 12 20 20 C 1.50699 * 109.47231 * 240.00135 * 17 15 12 21 21 H 1.08004 * 119.99984 * 0.02562 * 20 17 15 22 22 C 1.37877 * 120.00138 * 180.02562 * 20 17 15 23 23 N 1.31517 * 120.00109 * 179.97438 * 22 20 17 24 24 Si 1.86798 * 120.00005 * 359.97438 * 22 20 17 25 25 H 1.48501 * 109.47035 * 89.99835 * 24 22 20 26 26 H 1.48500 * 109.47562 * 209.99969 * 24 22 20 27 27 H 1.48506 * 109.47105 * 330.00403 * 24 22 20 28 28 H 1.08998 * 109.47300 * 306.08686 * 1 2 3 29 29 H 1.09001 * 109.46497 * 66.08169 * 1 2 3 30 30 H 1.08997 * 109.47003 * 186.08055 * 1 2 3 31 31 H 1.08993 * 109.47266 * 239.99251 * 2 1 3 32 32 H 1.09002 * 109.46837 * 170.95381 * 3 2 1 33 33 H 1.09003 * 109.46695 * 290.95136 * 3 2 1 34 34 H 1.09000 * 109.47342 * 50.95266 * 3 2 1 35 35 H 1.08995 * 109.47721 * 152.58953 * 5 4 2 36 36 H 1.09004 * 109.46751 * 32.59166 * 5 4 2 37 37 H 1.08005 * 120.41838 * 359.95477 * 7 6 5 38 38 H 1.07995 * 120.79410 * 180.23166 * 8 7 6 39 39 H 1.07999 * 120.41666 * 179.78115 * 9 8 7 40 40 H 1.07999 * 119.62351 * 180.25632 * 10 9 8 41 41 H 1.09002 * 109.47518 * 89.99837 * 16 15 12 42 42 H 1.09005 * 109.47141 * 209.99618 * 16 15 12 43 43 H 1.08998 * 109.47555 * 329.99513 * 16 15 12 44 44 H 1.08998 * 109.47056 * 59.99619 * 19 17 15 45 45 H 1.08993 * 109.47561 * 180.02562 * 19 17 15 46 46 H 1.09003 * 109.46563 * 300.00239 * 19 17 15 47 47 H 0.97000 * 119.99661 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6904 1.1963 5 6 1.5578 -0.2724 2.5227 6 6 2.4448 0.8319 3.0374 7 6 2.0610 2.1494 2.8722 8 6 2.8816 3.1576 3.3540 9 6 4.0677 2.8014 3.9780 10 6 4.3850 1.4628 4.1071 11 7 3.5777 0.5300 3.6406 12 16 3.0908 -1.9437 1.0492 13 8 3.7518 -1.7621 -0.1955 14 8 3.7791 -2.0305 2.2893 15 7 2.2032 -3.3347 0.9088 16 6 1.8244 -4.0860 2.1080 17 6 1.7967 -3.8137 -0.4147 18 1 2.1676 -3.1301 -1.1783 19 6 2.3788 -5.2084 -0.6532 20 6 0.2927 -3.8783 -0.4854 21 1 -0.3009 -3.5908 0.3698 22 6 -0.3254 -4.3043 -1.6419 23 7 -1.6379 -4.3612 -1.7034 24 14 0.7014 -4.8008 -3.1213 25 1 1.0087 -6.2517 -3.0460 26 1 -0.0565 -4.5193 -4.3669 27 1 1.9684 -4.0262 -3.1269 28 1 -0.3634 0.6053 0.8305 29 1 -0.3632 0.4167 -0.9395 30 1 -0.3633 -1.0219 0.1089 31 1 1.8934 -0.5139 -0.8899 32 1 3.1180 1.4468 0.1616 33 1 1.8146 1.9075 -0.9598 34 1 1.5507 2.0009 0.7981 35 1 1.5999 -1.1206 3.2060 36 1 0.5315 0.0882 2.4540 37 1 1.1319 2.3904 2.3770 38 1 2.6056 4.1957 3.2426 39 1 4.7328 3.5605 4.3623 40 1 5.3049 1.1769 4.5955 41 1 0.8630 -3.7257 2.4740 42 1 1.7462 -5.1454 1.8633 43 1 2.5822 -3.9462 2.8789 44 1 2.0082 -5.8922 0.1104 45 1 2.0768 -5.5646 -1.6380 46 1 3.4666 -5.1616 -0.6020 47 1 -2.0727 -4.6606 -2.5172 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558690242.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:11 Heat of formation + Delta-G solvation = -19.172714 kcal Electronic energy + Delta-G solvation = -30252.336337 eV Core-core repulsion = 26370.036552 eV Total energy + Delta-G solvation = -3882.299784 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.28437 -37.26772 -36.70156 -36.33148 -35.18070 -32.85531 -32.50253 -32.10145 -30.59520 -29.97063 -26.94607 -26.31231 -25.66626 -24.98268 -23.52004 -22.27097 -21.01684 -20.40268 -18.44197 -17.44927 -17.09377 -16.85306 -16.43874 -16.27206 -15.65585 -15.58158 -15.06257 -14.37020 -14.04409 -13.89859 -13.65801 -13.50138 -13.37902 -13.23906 -12.99476 -12.71695 -12.33486 -12.29354 -12.20292 -12.06475 -11.89211 -11.79847 -11.64932 -11.38415 -11.27741 -11.18980 -11.03858 -10.95464 -10.86366 -10.53059 -10.40803 -10.12405 -9.87887 -9.59315 -9.40967 -9.38915 -9.02104 -8.77314 -8.65267 -8.03381 -6.16942 -4.17201 0.95804 1.24066 1.33438 3.22711 3.35323 3.37109 3.39487 3.82671 4.12258 4.30768 4.33194 4.64935 4.79297 4.87683 4.95412 5.02324 5.08583 5.14852 5.34483 5.37889 5.50576 5.52618 5.62797 5.67961 5.74641 5.83912 5.89692 5.95244 6.08628 6.09673 6.15143 6.16980 6.23276 6.28289 6.31113 6.41447 6.56711 6.57790 6.58928 6.66691 6.81182 6.84651 6.95555 7.33479 7.41685 7.66467 8.08632 8.43587 8.86767 9.44913 10.95192 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018481 B = 0.004358 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.700755 B = 6423.038195 C = 7043.775990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 C -0.167 4.167 4 N -0.991 5.991 5 C 0.177 3.823 6 C 0.112 3.888 7 C -0.157 4.157 8 C -0.084 4.084 9 C -0.178 4.178 10 C 0.095 3.905 11 N -0.449 5.449 12 S 2.774 3.226 13 O -0.986 6.986 14 O -0.966 6.966 15 N -0.986 5.986 16 C 0.099 3.901 17 C 0.239 3.761 18 H 0.054 0.946 19 C -0.160 4.160 20 C -0.522 4.522 21 H 0.083 0.917 22 C 0.077 3.923 23 N -0.893 5.893 24 Si 0.873 3.127 25 H -0.277 1.277 26 H -0.295 1.295 27 H -0.262 1.262 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.153 0.847 41 H 0.047 0.953 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.048 0.952 46 H 0.033 0.967 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.738 13.207 9.203 17.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 C -0.225 4.225 4 N -0.827 5.827 5 C 0.050 3.950 6 C -0.028 4.028 7 C -0.178 4.178 8 C -0.110 4.110 9 C -0.198 4.198 10 C -0.062 4.062 11 N -0.158 5.158 12 S 2.784 3.216 13 O -0.970 6.970 14 O -0.950 6.950 15 N -0.827 5.827 16 C -0.047 4.047 17 C 0.134 3.866 18 H 0.071 0.929 19 C -0.219 4.219 20 C -0.561 4.561 21 H 0.101 0.899 22 C -0.126 4.126 23 N -0.531 5.531 24 Si 0.703 3.297 25 H -0.204 1.204 26 H -0.222 1.222 27 H -0.187 1.187 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.170 0.830 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.052 0.948 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.756 12.326 9.178 16.787 hybrid contribution -0.243 0.591 -1.057 1.235 sum 6.514 12.918 8.121 16.590 Atomic orbital electron populations 1.22154 0.94102 1.04412 1.01290 1.20829 0.95318 0.92940 0.86947 1.22452 1.01251 0.96667 1.02161 1.58190 1.64663 1.49655 1.10209 1.19956 0.95952 0.95732 0.83403 1.21860 0.92944 0.93939 0.94077 1.22044 1.01564 0.93489 1.00659 1.21526 0.93988 0.99676 0.95791 1.22147 0.98111 0.98015 1.01499 1.22846 0.98480 0.88835 0.96087 1.67744 1.02908 1.37573 1.07546 1.02201 0.73742 0.72574 0.73062 1.93552 1.72217 1.85934 1.45328 1.93618 1.70714 1.86161 1.44493 1.57556 1.72188 1.39660 1.13271 1.21291 0.99369 0.98129 0.85891 1.19060 0.96242 0.92216 0.79118 0.92881 1.22431 0.98426 1.00197 1.00853 1.21196 0.88650 1.45298 1.00945 0.89860 1.24862 0.94718 0.94848 0.98131 1.69871 1.08058 1.47053 1.28110 0.87081 0.80767 0.79340 0.82525 1.20368 1.22209 1.18675 0.93156 0.91909 0.89638 0.88408 0.92996 0.91910 0.91672 0.88679 0.88527 0.84499 0.85110 0.85156 0.82959 0.93470 0.90772 0.91723 0.92213 0.93335 0.94766 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 8.86 37.16 0.33 -2.00 16 2 C 0.15 2.26 3.19 -67.93 -0.22 2.05 16 3 C -0.17 -2.15 8.20 37.16 0.30 -1.85 16 4 N -0.99 -16.25 2.77 -108.57 -0.30 -16.55 16 5 C 0.18 2.46 5.33 -5.19 -0.03 2.44 16 6 C 0.11 1.54 5.80 -82.59 -0.48 1.06 16 7 C -0.16 -1.70 7.44 -39.44 -0.29 -2.00 16 8 C -0.08 -0.79 10.18 -39.27 -0.40 -1.19 16 9 C -0.18 -1.72 10.11 -39.44 -0.40 -2.12 16 10 C 0.09 1.16 11.18 -17.55 -0.20 0.97 16 11 N -0.45 -6.91 9.47 -9.48 -0.09 -6.99 16 12 S 2.77 54.79 6.04 -107.50 -0.65 54.14 16 13 O -0.99 -22.28 15.34 -57.17 -0.88 -23.16 16 14 O -0.97 -19.73 14.95 -57.17 -0.85 -20.59 16 15 N -0.99 -19.87 3.12 -115.85 -0.36 -20.23 16 16 C 0.10 1.74 9.90 59.84 0.59 2.33 16 17 C 0.24 5.48 2.21 -69.08 -0.15 5.32 16 18 H 0.05 1.30 5.97 -51.93 -0.31 0.99 16 19 C -0.16 -3.47 8.65 37.16 0.32 -3.15 16 20 C -0.52 -13.27 8.95 -34.44 -0.31 -13.58 16 21 H 0.08 2.25 7.89 -52.48 -0.41 1.84 16 22 C 0.08 2.07 5.45 -17.82 -0.10 1.98 16 23 N -0.89 -25.35 13.96 55.43 0.77 -24.58 16 24 Si 0.87 20.97 24.37 -169.99 -4.14 16.83 16 25 H -0.28 -6.50 6.87 56.52 0.39 -6.11 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.26 -6.21 6.53 56.52 0.37 -5.84 16 28 H 0.05 0.59 6.81 -51.93 -0.35 0.24 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.10 1.75 7.03 -51.93 -0.37 1.38 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.71 4.28 -51.93 -0.22 0.48 16 35 H 0.10 1.35 7.70 -51.93 -0.40 0.95 16 36 H 0.10 1.10 6.18 -51.93 -0.32 0.78 16 37 H 0.14 1.20 6.61 -52.48 -0.35 0.86 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.27 6.43 -51.93 -0.33 0.94 16 43 H 0.06 1.04 7.02 -51.93 -0.36 0.67 16 44 H 0.06 1.21 6.66 -51.93 -0.35 0.86 16 45 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 46 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 373.15 15.07 5.62 5.62 Total: -1.00 -32.58 373.15 -8.83 -41.41 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.93 Total: 3.84 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -1.02 Total: -9.74 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: 0.02 Total: -68.36 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -1.73 Total: -43.75 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.14 Total: 16.83 kcal Atomic # 16 Polarization: 54.79 SS G_CDS: -0.65 Total: 54.14 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.58 -8.83 -41.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558690242.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.241 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds