Wall clock time and date at job start Wed Apr 1 2020 00:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47247 * 2 1 4 4 N 1.46506 * 109.46529 * 119.99902 * 2 1 3 5 5 C 1.34944 * 126.03365 * 274.99617 * 4 2 1 6 6 C 1.35316 * 107.74386 * 180.25408 * 5 4 2 7 7 C 1.50701 * 126.04231 * 179.77243 * 6 5 4 8 8 H 1.09007 * 109.46840 * 20.00065 * 7 6 5 9 9 C 1.52999 * 109.47326 * 259.99796 * 7 6 5 10 10 N 1.46502 * 109.47236 * 139.99520 * 7 6 5 11 11 S 1.65597 * 120.00081 * 215.00053 * 10 7 6 12 12 O 1.42104 * 104.27672 * 181.07632 * 11 10 7 13 13 O 1.42103 * 104.27950 * 308.93057 * 11 10 7 14 14 C 1.81394 * 104.44971 * 65.00183 * 11 10 7 15 15 C 1.53000 * 109.47151 * 173.67619 * 14 11 10 16 16 C 1.50699 * 115.54787 * 65.19382 * 15 14 11 17 17 H 1.08002 * 120.00123 * 264.78340 * 16 15 14 18 18 C 1.37881 * 120.00305 * 84.78772 * 16 15 14 19 19 N 1.31520 * 119.99595 * 352.23275 * 18 16 15 20 20 Si 1.86797 * 120.00440 * 172.24137 * 18 16 15 21 21 H 1.48500 * 109.47220 * 89.99255 * 20 18 16 22 22 H 1.48495 * 109.47254 * 209.99902 * 20 18 16 23 23 H 1.48503 * 109.46797 * 329.99474 * 20 18 16 24 24 C 1.52998 * 117.50051 * 279.52217 * 15 14 11 25 25 C 1.53002 * 117.50041 * 210.85890 * 15 14 11 26 26 C 1.39874 * 107.92135 * 359.64228 * 6 5 4 27 27 N 1.30836 * 108.20104 * 0.36461 * 26 6 5 28 28 H 1.08992 * 109.47154 * 300.00690 * 1 2 3 29 29 H 1.09001 * 109.46683 * 60.00349 * 1 2 3 30 30 H 1.09003 * 109.46876 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46883 * 239.99506 * 2 1 3 32 32 H 1.09004 * 109.47093 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46993 * 299.99460 * 3 2 1 34 34 H 1.09003 * 109.47147 * 59.99676 * 3 2 1 35 35 H 1.07992 * 126.13068 * 359.97438 * 5 4 2 36 36 H 1.08998 * 109.46918 * 59.99826 * 9 7 6 37 37 H 1.09002 * 109.47359 * 179.97438 * 9 7 6 38 38 H 1.08997 * 109.47365 * 300.00160 * 9 7 6 39 39 H 0.97003 * 119.99735 * 35.00672 * 10 7 6 40 40 H 1.08994 * 109.47498 * 293.68121 * 14 11 10 41 41 H 1.09001 * 109.47317 * 53.67795 * 14 11 10 42 42 H 0.96997 * 119.99601 * 185.03231 * 19 18 16 43 43 H 1.08994 * 117.49958 * 359.97438 * 24 15 14 44 44 H 1.09001 * 117.49572 * 145.02378 * 24 15 14 45 45 H 1.09000 * 117.49962 * 214.98391 * 25 15 14 46 46 H 1.09000 * 117.49823 * 359.97438 * 25 15 14 47 47 H 1.08001 * 125.89880 * 180.14961 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1932 -0.1392 2.4154 6 6 2.6616 -1.1037 3.2409 7 6 3.0039 -0.9338 4.6987 8 1 2.5030 -0.0476 5.0886 9 6 4.5177 -0.7729 4.8517 10 7 2.5602 -2.1136 5.4452 11 16 1.9885 -1.9489 6.9906 12 8 1.6844 -3.2768 7.3952 13 8 2.9900 -1.1916 7.6560 14 6 0.4690 -0.9748 6.8097 15 6 -0.2437 -0.8860 8.1606 16 6 0.4946 -0.1324 9.2367 17 1 1.1084 -0.6672 9.9463 18 6 0.3866 1.2400 9.3153 19 7 -0.2333 1.9062 8.3658 20 14 1.1207 2.1529 10.7703 21 1 2.5236 2.5296 10.4616 22 1 0.3263 3.3787 11.0375 23 1 1.0959 1.2760 11.9685 24 6 -1.0917 -2.0841 8.5921 25 6 -1.7704 -0.7857 8.1486 26 6 2.7690 -2.2870 2.5029 27 7 2.3866 -2.0399 1.2764 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9562 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.9989 0.8888 2.6831 36 1 4.8477 0.1049 4.2962 37 1 4.7653 -0.6496 5.9060 38 1 5.0185 -1.6590 4.4618 39 1 2.6015 -2.9914 5.0343 40 1 0.7194 0.0282 6.4642 41 1 -0.1867 -1.4558 6.0839 42 1 -0.2463 2.8759 8.3830 43 1 -1.1421 -2.9355 7.9135 44 1 -1.1158 -2.3270 9.6545 45 1 -2.2407 -0.1750 8.9193 46 1 -2.2670 -0.7826 7.1783 47 1 3.1121 -3.2393 2.8796 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574842186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:00 Heat of formation + Delta-G solvation = 21.067212 kcal Electronic energy + Delta-G solvation = -28662.382695 eV Core-core repulsion = 24781.827845 eV Total energy + Delta-G solvation = -3880.554850 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.40701 -36.80755 -36.70874 -36.13443 -35.33455 -34.94934 -32.02898 -30.63630 -30.12647 -28.48429 -28.12258 -27.67250 -25.43823 -23.64439 -22.61301 -21.19274 -20.32950 -20.18549 -19.59977 -18.48540 -17.44571 -16.69283 -16.35255 -15.55286 -15.46777 -15.03481 -14.95048 -14.71340 -14.39277 -14.27560 -13.79808 -13.63585 -13.48959 -13.06841 -12.97689 -12.91045 -12.56408 -12.49259 -12.06646 -11.91558 -11.82086 -11.70897 -11.62538 -11.37492 -11.23686 -11.15644 -11.01334 -10.92943 -10.89207 -10.55547 -10.45365 -10.40756 -10.09047 -9.73710 -9.48122 -9.21987 -8.93363 -8.54786 -8.43812 -8.06153 -6.13116 -4.22987 1.14708 1.82620 2.34041 2.73103 3.31500 3.36928 3.42481 3.57715 4.15074 4.38311 4.49412 4.58211 4.66721 4.70232 4.81810 5.04648 5.07258 5.10214 5.15958 5.22416 5.24436 5.27955 5.31271 5.41260 5.52508 5.53513 5.61944 5.77124 5.78267 5.83220 5.89743 6.01690 6.10190 6.27348 6.38866 6.46714 6.50645 6.60581 6.64464 6.74603 6.94543 7.00363 7.25544 7.38527 7.40928 7.64826 7.81582 8.22521 8.82425 9.47892 10.94609 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012279 B = 0.003572 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.706701 B = 7837.957008 C = 8328.100260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.156 3.844 3 C -0.166 4.166 4 N -0.367 5.367 5 C 0.066 3.934 6 C -0.237 4.237 7 C 0.232 3.768 8 H 0.089 0.911 9 C -0.163 4.163 10 N -1.125 6.125 11 S 2.607 3.393 12 O -0.976 6.976 13 O -0.948 6.948 14 C -0.554 4.554 15 C 0.044 3.956 16 C -0.514 4.514 17 H 0.068 0.932 18 C 0.083 3.917 19 N -0.876 5.876 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.270 1.270 24 C -0.208 4.208 25 C -0.142 4.142 26 C 0.058 3.942 27 N -0.299 5.299 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.174 0.826 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.407 0.593 40 H 0.132 0.868 41 H 0.098 0.902 42 H 0.262 0.738 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.065 0.935 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.562 -1.062 -17.771 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.054 3.946 3 C -0.224 4.224 4 N -0.150 5.150 5 C -0.081 4.081 6 C -0.250 4.250 7 C 0.123 3.877 8 H 0.107 0.893 9 C -0.222 4.222 10 N -0.880 5.880 11 S 2.704 3.296 12 O -0.967 6.967 13 O -0.938 6.938 14 C -0.687 4.687 15 C 0.042 3.958 16 C -0.551 4.551 17 H 0.086 0.914 18 C -0.122 4.122 19 N -0.511 5.511 20 Si 0.717 3.283 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.194 1.194 24 C -0.246 4.246 25 C -0.181 4.181 26 C -0.128 4.128 27 N -0.119 5.119 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.191 0.809 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.240 0.760 40 H 0.150 0.850 41 H 0.116 0.884 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.084 0.916 47 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 3.665 -1.462 -18.250 18.672 hybrid contribution -0.093 0.967 0.749 1.227 sum 3.572 -0.495 -17.501 17.869 Atomic orbital electron populations 1.22257 0.93576 1.03385 1.03249 1.21243 0.94863 0.92727 0.85734 1.22215 1.02325 0.94028 1.03864 1.48770 1.50594 1.07339 1.08328 1.22247 1.00430 0.99922 0.85493 1.20205 1.13573 0.93907 0.97314 1.18808 0.95175 0.87617 0.86117 0.89304 1.22285 0.94781 1.01645 1.03498 1.56074 1.81317 1.14499 1.36099 1.05128 0.77312 0.75070 0.72047 1.93502 1.86429 1.36602 1.80128 1.93536 1.55680 1.73332 1.71253 1.29977 1.18143 1.14138 1.06480 1.18276 0.90797 0.96769 0.89974 1.20528 1.29774 0.91726 1.13095 0.91358 1.24937 0.93800 0.97462 0.96009 1.69985 1.41482 1.07334 1.32332 0.86594 0.79369 0.79145 0.83160 1.20004 1.21136 1.19437 1.23195 1.08773 0.91695 1.00917 1.22545 0.96839 0.98459 1.00270 1.23630 0.99381 0.99198 0.90585 1.77322 1.20930 0.93285 1.20401 0.91564 0.90556 0.91611 0.88169 0.91445 0.90013 0.91203 0.80888 0.92102 0.90484 0.92466 0.76017 0.85021 0.88353 0.92818 0.90702 0.89540 0.89632 0.91627 0.80315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 9.52 37.16 0.35 -0.85 16 2 C 0.16 1.22 3.93 -67.93 -0.27 0.95 16 3 C -0.17 -0.96 8.83 37.15 0.33 -0.63 16 4 N -0.37 -4.05 3.53 -54.86 -0.19 -4.24 16 5 C 0.07 0.74 10.50 -17.22 -0.18 0.55 16 6 C -0.24 -2.93 5.09 -105.05 -0.54 -3.46 16 7 C 0.23 3.17 3.11 -69.08 -0.21 2.96 16 8 H 0.09 1.25 7.29 -51.93 -0.38 0.87 16 9 C -0.16 -2.12 9.50 37.16 0.35 -1.77 16 10 N -1.12 -16.86 5.34 -5.88 -0.03 -16.89 16 11 S 2.61 52.31 5.11 -107.50 -0.55 51.76 16 12 O -0.98 -21.57 18.08 -57.54 -1.04 -22.61 16 13 O -0.95 -22.04 16.79 -57.54 -0.97 -23.00 16 14 C -0.55 -11.57 5.76 37.16 0.21 -11.36 16 15 C 0.04 1.07 1.32 -155.66 -0.21 0.87 16 16 C -0.51 -13.96 8.19 -34.44 -0.28 -14.24 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C 0.08 2.23 5.38 -17.82 -0.10 2.13 16 19 N -0.88 -23.66 12.98 55.43 0.72 -22.94 16 20 Si 0.89 21.15 29.55 -169.99 -5.02 16.13 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 C -0.21 -4.62 9.96 -26.69 -0.27 -4.89 16 25 C -0.14 -3.24 9.49 -26.69 -0.25 -3.50 16 26 C 0.06 0.71 11.28 -17.36 -0.20 0.52 16 27 N -0.30 -3.88 12.58 30.63 0.39 -3.49 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.41 7.16 -51.93 -0.37 0.03 16 35 H 0.17 1.53 7.26 -52.49 -0.38 1.15 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.16 7.43 -51.93 -0.39 0.78 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.41 5.20 7.84 -34.47 -0.27 4.93 16 40 H 0.13 2.81 7.64 -51.93 -0.40 2.41 16 41 H 0.10 1.78 8.09 -51.92 -0.42 1.36 16 42 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 43 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 44 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 45 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 46 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 47 H 0.18 1.77 7.68 -52.49 -0.40 1.37 16 LS Contribution 401.36 15.07 6.05 6.05 Total: -1.00 -33.86 401.36 -9.52 -43.38 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -7.63 Total: 8.59 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: -1.25 Total: -32.73 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 0.88 Total: -47.56 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -2.01 Total: -45.61 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 52.31 SS G_CDS: -0.55 Total: 51.76 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.86 -9.52 -43.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574842186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.446 kcal (2) G-P(sol) polarization free energy of solvation -33.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds