Wall clock time and date at job start Wed Apr 1 2020 00:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47247 * 2 1 4 4 N 1.46506 * 109.46529 * 119.99902 * 2 1 3 5 5 C 1.34944 * 126.03365 * 274.99617 * 4 2 1 6 6 C 1.35316 * 107.74386 * 180.25408 * 5 4 2 7 7 C 1.50701 * 126.04231 * 179.77243 * 6 5 4 8 8 H 1.09007 * 109.46840 * 20.00065 * 7 6 5 9 9 C 1.52999 * 109.47326 * 259.99796 * 7 6 5 10 10 N 1.46502 * 109.47236 * 139.99520 * 7 6 5 11 11 S 1.65597 * 120.00081 * 215.00053 * 10 7 6 12 12 O 1.42104 * 104.27672 * 181.07632 * 11 10 7 13 13 O 1.42103 * 104.27950 * 308.93057 * 11 10 7 14 14 C 1.81394 * 104.44971 * 65.00183 * 11 10 7 15 15 C 1.53000 * 109.47151 * 173.67619 * 14 11 10 16 16 C 1.50699 * 115.54787 * 65.19382 * 15 14 11 17 17 H 1.08002 * 120.00123 * 264.78340 * 16 15 14 18 18 C 1.37881 * 120.00305 * 84.78772 * 16 15 14 19 19 N 1.31520 * 119.99595 * 352.23275 * 18 16 15 20 20 Si 1.86797 * 120.00440 * 172.24137 * 18 16 15 21 21 H 1.48500 * 109.47220 * 89.99255 * 20 18 16 22 22 H 1.48495 * 109.47254 * 209.99902 * 20 18 16 23 23 H 1.48503 * 109.46797 * 329.99474 * 20 18 16 24 24 C 1.52998 * 117.50051 * 279.52217 * 15 14 11 25 25 C 1.53002 * 117.50041 * 210.85890 * 15 14 11 26 26 C 1.39874 * 107.92135 * 359.64228 * 6 5 4 27 27 N 1.30836 * 108.20104 * 0.36461 * 26 6 5 28 28 H 1.08992 * 109.47154 * 300.00690 * 1 2 3 29 29 H 1.09001 * 109.46683 * 60.00349 * 1 2 3 30 30 H 1.09003 * 109.46876 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46883 * 239.99506 * 2 1 3 32 32 H 1.09004 * 109.47093 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46993 * 299.99460 * 3 2 1 34 34 H 1.09003 * 109.47147 * 59.99676 * 3 2 1 35 35 H 1.07992 * 126.13068 * 359.97438 * 5 4 2 36 36 H 1.08998 * 109.46918 * 59.99826 * 9 7 6 37 37 H 1.09002 * 109.47359 * 179.97438 * 9 7 6 38 38 H 1.08997 * 109.47365 * 300.00160 * 9 7 6 39 39 H 0.97003 * 119.99735 * 35.00672 * 10 7 6 40 40 H 1.08994 * 109.47498 * 293.68121 * 14 11 10 41 41 H 1.09001 * 109.47317 * 53.67795 * 14 11 10 42 42 H 0.96997 * 119.99601 * 185.03231 * 19 18 16 43 43 H 1.08994 * 117.49958 * 359.97438 * 24 15 14 44 44 H 1.09001 * 117.49572 * 145.02378 * 24 15 14 45 45 H 1.09000 * 117.49962 * 214.98391 * 25 15 14 46 46 H 1.09000 * 117.49823 * 359.97438 * 25 15 14 47 47 H 1.08001 * 125.89880 * 180.14961 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1932 -0.1392 2.4154 6 6 2.6616 -1.1037 3.2409 7 6 3.0039 -0.9338 4.6987 8 1 2.5030 -0.0476 5.0886 9 6 4.5177 -0.7729 4.8517 10 7 2.5602 -2.1136 5.4452 11 16 1.9885 -1.9489 6.9906 12 8 1.6844 -3.2768 7.3952 13 8 2.9900 -1.1916 7.6560 14 6 0.4690 -0.9748 6.8097 15 6 -0.2437 -0.8860 8.1606 16 6 0.4946 -0.1324 9.2367 17 1 1.1084 -0.6672 9.9463 18 6 0.3866 1.2400 9.3153 19 7 -0.2333 1.9062 8.3658 20 14 1.1207 2.1529 10.7703 21 1 2.5236 2.5296 10.4616 22 1 0.3263 3.3787 11.0375 23 1 1.0959 1.2760 11.9685 24 6 -1.0917 -2.0841 8.5921 25 6 -1.7704 -0.7857 8.1486 26 6 2.7690 -2.2870 2.5029 27 7 2.3866 -2.0399 1.2764 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9562 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.9989 0.8888 2.6831 36 1 4.8477 0.1049 4.2962 37 1 4.7653 -0.6496 5.9060 38 1 5.0185 -1.6590 4.4618 39 1 2.6015 -2.9914 5.0343 40 1 0.7194 0.0282 6.4642 41 1 -0.1867 -1.4558 6.0839 42 1 -0.2463 2.8759 8.3830 43 1 -1.1421 -2.9355 7.9135 44 1 -1.1158 -2.3270 9.6545 45 1 -2.2407 -0.1750 8.9193 46 1 -2.2670 -0.7826 7.1783 47 1 3.1121 -3.2393 2.8796 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574842186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:59 Heat of formation + Delta-G solvation = -1.438697 kcal Electronic energy + Delta-G solvation = -28663.358625 eV Core-core repulsion = 24781.827845 eV Total energy + Delta-G solvation = -3881.530780 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.27354 -38.54587 -38.01780 -37.54277 -36.71038 -36.14666 -34.05390 -31.66653 -31.00938 -29.83659 -29.42008 -28.19036 -27.45639 -24.52521 -23.53404 -22.98358 -21.55547 -21.18233 -20.95022 -20.01043 -18.63181 -18.26672 -17.90899 -16.80206 -16.72311 -16.58811 -16.23754 -15.87947 -15.72171 -15.45471 -15.17289 -14.88145 -14.62040 -14.39176 -13.80272 -13.73147 -13.71560 -13.61109 -13.27258 -13.13831 -13.09226 -13.02317 -12.87070 -12.84037 -12.83314 -12.50201 -12.41119 -12.35411 -12.30527 -12.19308 -11.97884 -11.87897 -11.54907 -11.40203 -10.84771 -10.57655 -10.50394 -10.33764 -9.85333 -9.33785 -8.16309 -6.30513 -0.44731 0.95991 1.41314 1.43850 1.52185 1.59607 1.77228 2.17672 2.42576 2.99262 3.11222 3.40243 3.47183 3.54748 3.87353 3.93061 3.95673 4.03171 4.12191 4.19489 4.25966 4.33956 4.48105 4.50317 4.56186 4.61385 4.64787 4.67564 4.81270 4.83081 4.86743 4.90872 4.94655 4.98551 5.07764 5.19184 5.22084 5.22987 5.39411 5.45107 5.49004 5.59526 5.69707 5.75023 6.15859 6.23998 6.26060 6.75163 6.76885 7.41491 8.90905 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012279 B = 0.003572 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.706701 B = 7837.957008 C = 8328.100260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 C -0.161 4.161 4 N -0.365 5.365 5 C 0.069 3.931 6 C -0.250 4.250 7 C 0.230 3.770 8 H 0.083 0.917 9 C -0.162 4.162 10 N -1.107 6.107 11 S 2.625 3.375 12 O -0.999 6.999 13 O -0.985 6.985 14 C -0.552 4.552 15 C 0.014 3.986 16 C -0.534 4.534 17 H 0.048 0.952 18 C 0.046 3.954 19 N -0.891 5.891 20 Si 0.933 3.067 21 H -0.275 1.275 22 H -0.274 1.274 23 H -0.271 1.271 24 C -0.199 4.199 25 C -0.138 4.138 26 C 0.053 3.947 27 N -0.326 5.326 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.047 0.953 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.195 0.805 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.420 0.580 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.266 0.734 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.383 -0.556 -19.593 19.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.047 3.953 3 C -0.219 4.219 4 N -0.148 5.148 5 C -0.079 4.079 6 C -0.263 4.263 7 C 0.122 3.878 8 H 0.101 0.899 9 C -0.221 4.221 10 N -0.867 5.867 11 S 2.722 3.278 12 O -0.989 6.989 13 O -0.975 6.975 14 C -0.684 4.684 15 C 0.012 3.988 16 C -0.571 4.571 17 H 0.066 0.934 18 C -0.157 4.157 19 N -0.527 5.527 20 Si 0.759 3.241 21 H -0.201 1.201 22 H -0.199 1.199 23 H -0.196 1.196 24 C -0.237 4.237 25 C -0.178 4.178 26 C -0.133 4.133 27 N -0.147 5.147 28 H 0.078 0.922 29 H 0.119 0.881 30 H 0.067 0.933 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.089 0.911 35 H 0.212 0.788 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.256 0.744 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.101 0.899 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 3.474 -0.968 -20.083 20.404 hybrid contribution -0.046 0.810 1.230 1.473 sum 3.428 -0.158 -18.853 19.162 Atomic orbital electron populations 1.22228 0.93067 1.02499 1.04161 1.21569 0.95246 0.93711 0.84755 1.22207 1.02008 0.92614 1.05032 1.49077 1.49772 1.06833 1.09103 1.22599 0.99207 1.00670 0.85404 1.20047 1.15198 0.94608 0.96463 1.18892 0.95481 0.86592 0.86836 0.89902 1.22270 0.94473 1.03156 1.02197 1.55590 1.80567 1.15868 1.34636 1.04324 0.76694 0.73997 0.72791 1.93460 1.86655 1.37432 1.81356 1.93492 1.56829 1.74050 1.73123 1.29873 1.18887 1.14342 1.05346 1.18410 0.91489 0.98007 0.90935 1.20683 1.30141 0.92388 1.13929 0.93358 1.25471 0.94345 0.98022 0.97842 1.70020 1.41965 1.07606 1.33101 0.85926 0.78823 0.78519 0.80857 1.20060 1.19880 1.19609 1.23243 1.07274 0.91891 1.01258 1.22499 0.96046 0.98486 1.00723 1.23921 0.99106 0.99864 0.90397 1.77282 1.21877 0.94604 1.20891 0.92231 0.88051 0.93340 0.87829 0.91882 0.87790 0.91103 0.78827 0.90266 0.92948 0.91251 0.74438 0.85678 0.85520 0.92508 0.88569 0.89937 0.91476 0.89603 0.78819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.52 71.98 0.69 -1.34 16 2 C 0.15 2.01 3.93 44.99 0.18 2.19 16 3 C -0.16 -1.44 8.83 71.98 0.64 -0.81 16 4 N -0.37 -7.42 3.53 -327.49 -1.15 -8.57 16 5 C 0.07 1.41 10.50 83.54 0.88 2.29 16 6 C -0.25 -5.76 5.09 -20.14 -0.10 -5.87 16 7 C 0.23 6.04 3.11 44.24 0.14 6.17 16 8 H 0.08 2.28 7.29 -2.38 -0.02 2.26 16 9 C -0.16 -4.05 9.50 71.98 0.68 -3.37 16 10 N -1.11 -32.03 5.34 -172.51 -0.92 -32.95 16 11 S 2.63 104.51 5.11 -56.49 -0.29 104.22 16 12 O -1.00 -43.59 18.08 -127.65 -2.31 -45.90 16 13 O -0.99 -46.48 16.79 -127.65 -2.14 -48.62 16 14 C -0.55 -22.57 5.76 71.98 0.41 -22.16 16 15 C 0.01 0.66 1.32 -52.93 -0.07 0.59 16 16 C -0.53 -29.35 8.19 25.60 0.21 -29.14 16 17 H 0.05 2.77 7.83 -2.91 -0.02 2.74 16 18 C 0.05 2.50 5.38 84.65 0.46 2.95 16 19 N -0.89 -47.94 12.98 21.45 0.28 -47.66 16 20 Si 0.93 43.37 29.55 68.60 2.03 45.40 16 21 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 24 C -0.20 -8.66 9.96 30.62 0.30 -8.36 16 25 C -0.14 -6.21 9.49 30.62 0.29 -5.92 16 26 C 0.05 1.21 11.28 85.24 0.96 2.17 16 27 N -0.33 -7.99 12.58 -57.02 -0.72 -8.71 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.07 0.64 7.16 -2.39 -0.02 0.62 16 35 H 0.19 2.98 7.26 -2.91 -0.02 2.96 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.05 1.58 7.43 -2.39 -0.02 1.56 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.42 10.11 7.84 -96.74 -0.76 9.35 16 40 H 0.12 5.28 7.64 -2.39 -0.02 5.26 16 41 H 0.13 4.34 8.09 -2.39 -0.02 4.32 16 42 H 0.27 13.54 8.32 -92.71 -0.77 12.76 16 43 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 44 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 45 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 46 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 47 H 0.20 3.53 7.68 -2.91 -0.02 3.50 16 Total: -1.00 -72.14 401.36 0.64 -71.51 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 0.20 Total: 31.88 kcal Atomic # 6 Polarization: -66.26 SS G_CDS: 5.66 Total: -60.60 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -2.52 Total: -97.90 kcal Atomic # 8 Polarization: -90.07 SS G_CDS: -4.45 Total: -94.52 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 104.51 SS G_CDS: -0.29 Total: 104.22 kcal Total: -72.14 0.64 -71.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574842186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.070 kcal (2) G-P(sol) polarization free energy of solvation -72.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds