Wall clock time and date at job start Wed Apr 1 2020 01:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.29103 * 126.00760 * 2 1 4 4 N 1.29016 * 110.25899 * 179.97438 * 3 2 1 5 5 C 1.32903 * 108.63446 * 359.97438 * 4 3 2 6 6 C 1.34394 * 126.00271 * 179.97438 * 2 1 3 7 7 C 1.50528 * 129.25990 * 0.13259 * 6 2 1 8 8 C 1.53443 * 108.32312 * 163.59660 * 7 6 2 9 9 C 1.53103 * 109.55304 * 49.72265 * 8 7 6 10 10 H 1.09007 * 109.45368 * 49.93994 * 9 8 7 11 11 N 1.46497 * 109.45435 * 169.90039 * 9 8 7 12 12 C 1.34779 * 119.99604 * 205.00005 * 11 9 8 13 13 O 1.21574 * 120.00566 * 359.97438 * 12 11 9 14 14 N 1.34776 * 119.99573 * 179.97438 * 12 11 9 15 15 C 1.39247 * 119.99877 * 185.33919 * 14 12 11 16 16 C 1.39477 * 119.83332 * 214.42875 * 15 14 12 17 17 C 1.36379 * 120.17103 * 180.02562 * 16 15 14 18 18 C 1.40871 * 119.82222 * 0.02562 * 17 16 15 19 19 C 1.41159 * 120.16116 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99691 * 23.09718 * 19 18 17 21 21 C 1.39896 * 120.00032 * 203.09733 * 19 18 17 22 22 N 1.30881 * 119.99806 * 216.52000 * 21 19 18 23 23 Si 1.86797 * 119.99923 * 36.51630 * 21 19 18 24 24 H 1.48499 * 109.47215 * 266.40374 * 23 21 19 25 25 H 1.48502 * 109.46977 * 146.40850 * 23 21 19 26 26 H 1.48498 * 109.47416 * 26.40552 * 23 21 19 27 27 C 1.40869 * 119.67419 * 0.25032 * 18 17 16 28 28 C 1.36369 * 119.82953 * 359.48544 * 27 18 17 29 29 C 1.50602 * 129.16048 * 180.24196 * 5 4 3 30 30 H 1.09003 * 109.47175 * 270.00037 * 1 2 3 31 31 H 1.08994 * 109.46827 * 30.00232 * 1 2 3 32 32 H 1.09003 * 109.47053 * 150.00022 * 1 2 3 33 33 H 1.09003 * 109.69357 * 43.89126 * 7 6 2 34 34 H 1.08995 * 109.69647 * 283.29961 * 7 6 2 35 35 H 1.09002 * 109.45872 * 289.69289 * 8 7 6 36 36 H 1.09003 * 109.44375 * 169.73741 * 8 7 6 37 37 H 0.96999 * 120.00549 * 24.99250 * 11 9 8 38 38 H 0.96998 * 120.00529 * 5.33887 * 14 12 11 39 39 H 1.07996 * 119.91680 * 0.05101 * 16 15 14 40 40 H 1.07994 * 120.09224 * 179.97438 * 17 16 15 41 41 H 0.96998 * 120.00257 * 5.10545 * 22 21 19 42 42 H 1.08005 * 120.08059 * 179.74805 * 27 18 17 43 43 H 1.08001 * 119.91725 * 180.25060 * 28 27 18 44 44 H 1.09004 * 109.69179 * 43.66040 * 29 5 4 45 45 H 1.08996 * 109.69255 * 283.07821 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2241 1.0444 0.0000 4 7 3.4658 0.6942 0.0005 5 6 3.5327 -0.6331 0.0015 6 6 2.2551 -1.0872 0.0005 7 6 1.8722 -2.5430 -0.0016 8 6 3.1016 -3.3646 -0.4114 9 6 4.3082 -2.9342 0.4270 10 1 4.0349 -2.9322 1.4823 11 7 5.4123 -3.8724 0.2107 12 6 6.3610 -4.0261 1.1556 13 8 6.3007 -3.3857 2.1873 14 7 7.3764 -4.8896 0.9568 15 6 8.2942 -5.1315 1.9757 16 6 9.6306 -5.3780 1.6616 17 6 10.5352 -5.6163 2.6540 18 6 10.1166 -5.6135 3.9991 19 6 11.0467 -5.8598 5.0319 20 1 12.0991 -5.6840 4.8641 21 6 10.6055 -6.3317 6.2727 22 7 11.1864 -5.9236 7.3723 23 14 9.1872 -7.5442 6.3603 24 1 7.9145 -6.8040 6.5540 25 1 9.3987 -8.4718 7.5005 26 1 9.1209 -8.3206 5.0962 27 6 8.7640 -5.3695 4.3080 28 6 7.8722 -5.1275 3.3051 29 6 4.7468 -1.5242 0.0073 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 1.0648 -2.7094 -0.7147 34 1 1.5485 -2.8391 0.9962 35 1 3.3147 -3.1973 -1.4672 36 1 2.9026 -4.4232 -0.2445 37 1 5.4606 -4.3832 -0.6125 38 1 7.4680 -5.3426 0.1040 39 1 9.9500 -5.3798 0.6300 40 1 11.5696 -5.8075 2.4094 41 1 11.8725 -5.2390 7.3330 42 1 8.4351 -5.3699 5.3367 43 1 6.8357 -4.9363 3.5406 44 1 5.4791 -1.1426 0.7189 45 1 5.1848 -1.5548 -0.9903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594059596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:33 Heat of formation + Delta-G solvation = 86.116422 kcal Electronic energy + Delta-G solvation = -28461.905204 eV Core-core repulsion = 24481.019899 eV Total energy + Delta-G solvation = -3980.885305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.64748 -40.11444 -38.14014 -37.03975 -35.22596 -34.46694 -33.73716 -33.04942 -30.64794 -29.89162 -29.71986 -28.76887 -28.09049 -24.89302 -24.13264 -22.79328 -21.66272 -21.65733 -21.10319 -20.23157 -19.81107 -18.27961 -17.88970 -17.50155 -17.15361 -16.64536 -15.80817 -15.04825 -14.84288 -14.49063 -14.40454 -14.24660 -14.11584 -14.04083 -13.90001 -13.61094 -13.42543 -13.14955 -12.68964 -12.53172 -12.42815 -12.37436 -12.02175 -11.89931 -11.62218 -11.54889 -11.24050 -10.99212 -10.80055 -10.71357 -10.23106 -10.21307 -10.15624 -9.76071 -9.65262 -9.17260 -9.07249 -8.99445 -8.73281 -7.71355 -7.43996 -7.10125 -4.37694 1.28209 2.01755 2.33978 2.61025 2.84821 2.90750 3.25568 3.34004 3.54607 3.63427 3.83651 4.06385 4.09266 4.28812 4.35966 4.44948 4.48077 4.49422 4.63841 4.76123 4.80115 4.86888 5.07992 5.13711 5.26882 5.39840 5.47711 5.51041 5.68579 5.82581 5.89859 6.02596 6.11003 6.25085 6.27757 6.52643 6.60659 6.72589 6.90581 7.10835 7.12879 7.44108 7.51481 7.71916 7.81411 7.91125 8.06408 8.28560 8.42077 8.45553 8.64766 8.80745 9.05175 9.88853 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020267 B = 0.002153 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.225898 B =12999.294853 C =13262.190289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.286 5.286 3 N -0.098 5.098 4 N -0.259 5.259 5 C -0.005 4.005 6 C -0.027 4.027 7 C -0.037 4.037 8 C -0.123 4.123 9 C 0.170 3.830 10 H 0.095 0.905 11 N -0.747 5.747 12 C 0.694 3.306 13 O -0.574 6.574 14 N -0.665 5.665 15 C -0.003 4.003 16 C -0.090 4.090 17 C -0.214 4.214 18 C 0.092 3.908 19 C -0.524 4.524 20 H 0.078 0.922 21 C 0.056 3.944 22 N -0.791 5.791 23 Si 1.060 2.940 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.265 1.265 27 C -0.236 4.236 28 C -0.055 4.055 29 C -0.047 4.047 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.394 0.606 38 H 0.391 0.609 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.291 0.709 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.179 2.479 -17.381 28.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.078 5.078 3 N -0.076 5.076 4 N -0.123 5.123 5 C -0.146 4.146 6 C -0.161 4.161 7 C -0.077 4.077 8 C -0.161 4.161 9 C 0.063 3.937 10 H 0.113 0.887 11 N -0.403 5.403 12 C 0.395 3.605 13 O -0.451 6.451 14 N -0.311 5.311 15 C -0.096 4.096 16 C -0.111 4.111 17 C -0.234 4.234 18 C 0.089 3.911 19 C -0.551 4.551 20 H 0.096 0.904 21 C -0.168 4.168 22 N -0.411 5.411 23 Si 0.884 3.116 24 H -0.198 1.198 25 H -0.212 1.212 26 H -0.189 1.189 27 C -0.256 4.256 28 C -0.075 4.075 29 C -0.088 4.088 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.227 0.773 38 H 0.224 0.776 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.112 0.888 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.027 3.783 -15.287 27.897 hybrid contribution 0.893 -0.265 -1.865 2.085 sum -22.134 3.518 -17.152 28.222 Atomic orbital electron populations 1.22258 0.72888 1.05798 1.05112 1.46828 1.09090 1.04692 1.47213 1.78603 0.96164 1.11291 1.21513 1.74837 1.09385 1.12047 1.16021 1.21601 0.94715 0.91347 1.06943 1.21833 0.91257 0.92273 1.10699 1.20085 0.98612 0.85738 1.03284 1.21856 0.93255 1.00357 1.00649 1.20717 0.84905 0.86918 1.01164 0.88737 1.45076 1.26949 1.46990 1.21308 1.16018 0.80284 0.80493 0.83747 1.90946 1.77242 1.49568 1.27295 1.42046 1.27664 1.44820 1.16596 1.16807 0.88002 1.17801 0.86950 1.20077 0.91359 1.02033 0.97582 1.20477 0.97883 1.12509 0.92503 1.17689 0.91926 0.89267 0.92220 1.20490 0.95977 1.41460 0.97202 0.90351 1.27295 1.00605 0.97658 0.91231 1.70568 1.18743 1.21133 1.30636 0.83816 0.74862 0.75935 0.76967 1.19755 1.21185 1.18940 1.20682 0.94317 1.13042 0.97565 1.20311 0.98619 0.97220 0.91345 1.20435 0.93079 0.91875 1.03379 0.88946 0.87993 0.88391 0.89676 0.89180 0.90563 0.89471 0.77297 0.77587 0.88944 0.88467 0.89783 0.87974 0.87684 0.88789 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.29 11.27 59.85 0.67 0.96 16 2 N -0.29 -2.67 3.73 -64.00 -0.24 -2.90 16 3 N -0.10 -1.30 13.19 60.35 0.80 -0.50 16 4 N -0.26 -3.90 12.40 33.16 0.41 -3.49 16 5 C -0.01 -0.07 7.11 -83.12 -0.59 -0.66 16 6 C -0.03 -0.25 6.76 -82.50 -0.56 -0.81 16 7 C -0.04 -0.20 5.97 -27.74 -0.17 -0.37 16 8 C -0.12 -0.72 5.37 -26.45 -0.14 -0.86 16 9 C 0.17 1.71 2.43 -67.61 -0.16 1.55 16 10 H 0.09 1.19 7.55 -51.93 -0.39 0.80 16 11 N -0.75 -8.04 5.08 -58.36 -0.30 -8.34 16 12 C 0.69 11.41 8.24 -86.92 -0.72 10.70 16 13 O -0.57 -12.27 13.74 5.30 0.07 -12.19 16 14 N -0.67 -10.87 5.31 -14.10 -0.07 -10.95 16 15 C 0.00 -0.07 6.27 -83.57 -0.52 -0.59 16 16 C -0.09 -1.90 9.90 -39.79 -0.39 -2.30 16 17 C -0.21 -5.08 9.74 -39.26 -0.38 -5.46 16 18 C 0.09 2.41 5.17 -106.80 -0.55 1.86 16 19 C -0.52 -14.24 9.26 -37.85 -0.35 -14.59 16 20 H 0.08 2.18 8.06 -52.48 -0.42 1.75 16 21 C 0.06 1.47 5.08 -17.34 -0.09 1.39 16 22 N -0.79 -21.10 13.66 55.55 0.76 -20.34 16 23 Si 1.06 24.12 25.90 -169.99 -4.40 19.72 16 24 H -0.27 -6.03 6.55 56.52 0.37 -5.66 16 25 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 C -0.24 -6.06 7.65 -39.26 -0.30 -6.36 16 28 C -0.05 -1.31 8.57 -39.79 -0.34 -1.65 16 29 C -0.05 -0.55 5.88 -27.66 -0.16 -0.72 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 0.08 7.72 -51.93 -0.40 -0.32 16 33 H 0.08 0.24 7.87 -51.93 -0.41 -0.17 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.38 8.11 -51.93 -0.42 -0.04 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.39 2.84 8.62 -40.82 -0.35 2.48 16 38 H 0.39 4.76 8.83 -40.82 -0.36 4.40 16 39 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 41 H 0.29 7.57 8.73 -40.82 -0.36 7.21 16 42 H 0.10 2.64 5.15 -52.48 -0.27 2.37 16 43 H 0.11 2.49 6.47 -52.49 -0.34 2.15 16 44 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 370.53 15.07 5.58 5.58 Total: -1.00 -35.57 370.53 -8.08 -43.65 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.93 Total: 7.68 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -4.76 Total: -17.91 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 1.36 Total: -46.53 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.07 Total: -12.19 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -4.40 Total: 19.72 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.57 -8.08 -43.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594059596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.769 kcal (2) G-P(sol) polarization free energy of solvation -35.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds