Wall clock time and date at job start Wed Apr 1 2020 01:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.29103 * 126.00760 * 2 1 4 4 N 1.29016 * 110.25899 * 179.97438 * 3 2 1 5 5 C 1.32903 * 108.63446 * 359.97438 * 4 3 2 6 6 C 1.34394 * 126.00271 * 179.97438 * 2 1 3 7 7 C 1.50528 * 129.25990 * 0.13259 * 6 2 1 8 8 C 1.53443 * 108.32312 * 163.59660 * 7 6 2 9 9 C 1.53103 * 109.55304 * 49.72265 * 8 7 6 10 10 H 1.09007 * 109.45368 * 49.93994 * 9 8 7 11 11 N 1.46497 * 109.45435 * 169.90039 * 9 8 7 12 12 C 1.34779 * 119.99604 * 205.00005 * 11 9 8 13 13 O 1.21574 * 120.00566 * 359.97438 * 12 11 9 14 14 N 1.34776 * 119.99573 * 179.97438 * 12 11 9 15 15 C 1.39247 * 119.99877 * 185.33919 * 14 12 11 16 16 C 1.39477 * 119.83332 * 214.42875 * 15 14 12 17 17 C 1.36379 * 120.17103 * 180.02562 * 16 15 14 18 18 C 1.40871 * 119.82222 * 0.02562 * 17 16 15 19 19 C 1.41159 * 120.16116 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99691 * 23.09718 * 19 18 17 21 21 C 1.39896 * 120.00032 * 203.09733 * 19 18 17 22 22 N 1.30881 * 119.99806 * 216.52000 * 21 19 18 23 23 Si 1.86797 * 119.99923 * 36.51630 * 21 19 18 24 24 H 1.48499 * 109.47215 * 266.40374 * 23 21 19 25 25 H 1.48502 * 109.46977 * 146.40850 * 23 21 19 26 26 H 1.48498 * 109.47416 * 26.40552 * 23 21 19 27 27 C 1.40869 * 119.67419 * 0.25032 * 18 17 16 28 28 C 1.36369 * 119.82953 * 359.48544 * 27 18 17 29 29 C 1.50602 * 129.16048 * 180.24196 * 5 4 3 30 30 H 1.09003 * 109.47175 * 270.00037 * 1 2 3 31 31 H 1.08994 * 109.46827 * 30.00232 * 1 2 3 32 32 H 1.09003 * 109.47053 * 150.00022 * 1 2 3 33 33 H 1.09003 * 109.69357 * 43.89126 * 7 6 2 34 34 H 1.08995 * 109.69647 * 283.29961 * 7 6 2 35 35 H 1.09002 * 109.45872 * 289.69289 * 8 7 6 36 36 H 1.09003 * 109.44375 * 169.73741 * 8 7 6 37 37 H 0.96999 * 120.00549 * 24.99250 * 11 9 8 38 38 H 0.96998 * 120.00529 * 5.33887 * 14 12 11 39 39 H 1.07996 * 119.91680 * 0.05101 * 16 15 14 40 40 H 1.07994 * 120.09224 * 179.97438 * 17 16 15 41 41 H 0.96998 * 120.00257 * 5.10545 * 22 21 19 42 42 H 1.08005 * 120.08059 * 179.74805 * 27 18 17 43 43 H 1.08001 * 119.91725 * 180.25060 * 28 27 18 44 44 H 1.09004 * 109.69179 * 43.66040 * 29 5 4 45 45 H 1.08996 * 109.69255 * 283.07821 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2241 1.0444 0.0000 4 7 3.4658 0.6942 0.0005 5 6 3.5327 -0.6331 0.0015 6 6 2.2551 -1.0872 0.0005 7 6 1.8722 -2.5430 -0.0016 8 6 3.1016 -3.3646 -0.4114 9 6 4.3082 -2.9342 0.4270 10 1 4.0349 -2.9322 1.4823 11 7 5.4123 -3.8724 0.2107 12 6 6.3610 -4.0261 1.1556 13 8 6.3007 -3.3857 2.1873 14 7 7.3764 -4.8896 0.9568 15 6 8.2942 -5.1315 1.9757 16 6 9.6306 -5.3780 1.6616 17 6 10.5352 -5.6163 2.6540 18 6 10.1166 -5.6135 3.9991 19 6 11.0467 -5.8598 5.0319 20 1 12.0991 -5.6840 4.8641 21 6 10.6055 -6.3317 6.2727 22 7 11.1864 -5.9236 7.3723 23 14 9.1872 -7.5442 6.3603 24 1 7.9145 -6.8040 6.5540 25 1 9.3987 -8.4718 7.5005 26 1 9.1209 -8.3206 5.0962 27 6 8.7640 -5.3695 4.3080 28 6 7.8722 -5.1275 3.3051 29 6 4.7468 -1.5242 0.0073 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 1.0648 -2.7094 -0.7147 34 1 1.5485 -2.8391 0.9962 35 1 3.3147 -3.1973 -1.4672 36 1 2.9026 -4.4232 -0.2445 37 1 5.4606 -4.3832 -0.6125 38 1 7.4680 -5.3426 0.1040 39 1 9.9500 -5.3798 0.6300 40 1 11.5696 -5.8075 2.4094 41 1 11.8725 -5.2390 7.3330 42 1 8.4351 -5.3699 5.3367 43 1 6.8357 -4.9363 3.5406 44 1 5.4791 -1.1426 0.7189 45 1 5.1848 -1.5548 -0.9903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594059596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:32 Heat of formation + Delta-G solvation = 59.453233 kcal Electronic energy + Delta-G solvation = -28463.061407 eV Core-core repulsion = 24481.019899 eV Total energy + Delta-G solvation = -3982.041508 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.43898 -41.46270 -39.58450 -38.26102 -36.18557 -35.91109 -35.06751 -34.52012 -31.59236 -31.37597 -31.25450 -29.99725 -28.65092 -26.44431 -25.09217 -23.73589 -23.47476 -22.63705 -22.36788 -21.50504 -20.86518 -20.16564 -19.24294 -18.42926 -17.97150 -17.78829 -16.86123 -16.34761 -16.18524 -16.06594 -15.66384 -15.49052 -15.21407 -14.95840 -14.81389 -14.64237 -14.45127 -14.27940 -14.04763 -13.92987 -13.62502 -13.44211 -13.16646 -13.00687 -12.86306 -12.69644 -12.55595 -12.26468 -12.04912 -11.96532 -11.87919 -11.60839 -11.51086 -11.26725 -10.96298 -10.91656 -10.61118 -10.14002 -9.87532 -9.57874 -9.44443 -8.90485 -6.38360 0.55079 0.78494 0.96207 1.40596 1.42044 1.48627 1.53117 1.75619 1.77156 2.19592 2.21983 2.58700 3.13477 3.39458 3.54629 3.64995 3.75523 3.80550 3.82091 4.15889 4.24972 4.28940 4.32383 4.40574 4.44839 4.55889 4.58014 4.70330 4.75919 4.83645 4.91339 4.97890 5.02467 5.08251 5.11445 5.21528 5.23879 5.32775 5.44926 5.52147 5.56091 5.67133 5.68465 5.94605 6.00164 6.15473 6.25390 6.49750 6.71412 6.86307 7.23949 7.43800 7.72972 7.87008 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020267 B = 0.002153 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.225898 B =12999.294853 C =13262.190289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.277 5.277 3 N -0.134 5.134 4 N -0.310 5.310 5 C -0.038 4.038 6 C -0.007 4.007 7 C -0.035 4.035 8 C -0.112 4.112 9 C 0.171 3.829 10 H 0.067 0.933 11 N -0.718 5.718 12 C 0.692 3.308 13 O -0.626 6.626 14 N -0.656 5.656 15 C 0.026 3.974 16 C -0.085 4.085 17 C -0.221 4.221 18 C 0.069 3.931 19 C -0.561 4.561 20 H 0.054 0.946 21 C 0.027 3.973 22 N -0.815 5.815 23 Si 1.091 2.909 24 H -0.268 1.268 25 H -0.268 1.268 26 H -0.260 1.260 27 C -0.249 4.249 28 C -0.072 4.072 29 C -0.040 4.040 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.418 0.582 38 H 0.417 0.583 39 H 0.139 0.861 40 H 0.106 0.894 41 H 0.283 0.717 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.048 0.952 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.016 0.536 -21.144 33.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.069 5.069 3 N -0.112 5.112 4 N -0.174 5.174 5 C -0.180 4.180 6 C -0.143 4.143 7 C -0.074 4.074 8 C -0.150 4.150 9 C 0.065 3.935 10 H 0.085 0.915 11 N -0.375 5.375 12 C 0.393 3.607 13 O -0.506 6.506 14 N -0.305 5.305 15 C -0.068 4.068 16 C -0.105 4.105 17 C -0.241 4.241 18 C 0.066 3.934 19 C -0.589 4.589 20 H 0.073 0.927 21 C -0.192 4.192 22 N -0.436 5.436 23 Si 0.910 3.090 24 H -0.194 1.194 25 H -0.193 1.193 26 H -0.184 1.184 27 C -0.269 4.269 28 C -0.093 4.093 29 C -0.081 4.081 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.132 0.868 37 H 0.255 0.745 38 H 0.255 0.745 39 H 0.157 0.843 40 H 0.124 0.876 41 H 0.094 0.906 42 H 0.108 0.892 43 H 0.121 0.879 44 H 0.067 0.933 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -26.908 1.847 -19.137 33.071 hybrid contribution 1.900 0.471 -0.952 2.177 sum -25.008 2.318 -20.089 32.161 Atomic orbital electron populations 1.22814 0.69574 1.08161 1.06782 1.47293 1.10847 1.03816 1.44961 1.78485 0.96111 1.12978 1.23577 1.74746 1.10847 1.13915 1.17856 1.21836 0.96397 0.90907 1.08901 1.22415 0.90041 0.94079 1.07779 1.20369 0.99514 0.82251 1.05306 1.21861 0.90841 1.01734 1.00590 1.20799 0.86121 0.85839 1.00746 0.91502 1.44800 1.25363 1.46427 1.20884 1.16230 0.80710 0.79860 0.83896 1.90937 1.78331 1.51436 1.29893 1.41821 1.26811 1.45252 1.16600 1.16937 0.89008 1.13655 0.87194 1.20441 0.90517 1.00259 0.99302 1.20738 0.99089 1.12077 0.92156 1.17874 0.92049 0.90194 0.93281 1.20429 0.95107 1.44731 0.98629 0.92745 1.28264 1.01960 0.98185 0.90800 1.70633 1.19849 1.22206 1.30898 0.83438 0.72928 0.74895 0.77726 1.19366 1.19333 1.18364 1.20692 0.94600 1.13939 0.97692 1.20428 0.98362 0.97987 0.92476 1.20322 0.92301 0.92839 1.02641 0.87546 0.87262 0.84549 0.85346 0.87994 0.88665 0.86833 0.74459 0.74498 0.84295 0.87585 0.90624 0.89160 0.87853 0.93298 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.24 11.27 127.77 1.44 1.68 16 2 N -0.28 -4.61 3.73 -356.40 -1.33 -5.94 16 3 N -0.13 -3.58 13.19 37.02 0.49 -3.09 16 4 N -0.31 -9.73 12.40 -48.99 -0.61 -10.33 16 5 C -0.04 -0.95 7.11 41.75 0.30 -0.66 16 6 C -0.01 -0.12 6.76 41.50 0.28 0.16 16 7 C -0.04 -0.20 5.97 29.94 0.18 -0.02 16 8 C -0.11 -0.74 5.37 30.78 0.17 -0.58 16 9 C 0.17 3.06 2.43 45.20 0.11 3.17 16 10 H 0.07 1.62 7.55 -2.38 -0.02 1.60 16 11 N -0.72 -13.08 5.08 -456.83 -2.32 -15.41 16 12 C 0.69 21.23 8.24 179.05 1.48 22.71 16 13 O -0.63 -26.62 13.74 -3.95 -0.05 -26.67 16 14 N -0.66 -19.15 5.31 -316.79 -1.68 -20.83 16 15 C 0.03 1.05 6.27 38.56 0.24 1.29 16 16 C -0.09 -3.33 9.90 22.13 0.22 -3.11 16 17 C -0.22 -10.31 9.74 22.48 0.22 -10.09 16 18 C 0.07 3.68 5.17 -21.27 -0.11 3.57 16 19 C -0.56 -31.94 9.26 23.39 0.22 -31.73 16 20 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 21 C 0.03 1.46 5.08 85.24 0.43 1.89 16 22 N -0.81 -45.53 13.66 21.82 0.30 -45.23 16 23 Si 1.09 49.60 25.90 68.60 1.78 51.38 16 24 H -0.27 -11.89 6.55 99.48 0.65 -11.24 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 26 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 27 C -0.25 -13.00 7.65 22.48 0.17 -12.83 16 28 C -0.07 -3.41 8.57 22.13 0.19 -3.22 16 29 C -0.04 -0.94 5.88 29.99 0.18 -0.76 16 30 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.14 -0.53 7.72 -2.39 -0.02 -0.55 16 33 H 0.13 -0.23 7.87 -2.39 -0.02 -0.25 16 34 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.09 0.37 8.11 -2.39 -0.02 0.35 16 36 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.42 3.89 8.62 -92.71 -0.80 3.09 16 38 H 0.42 8.01 8.83 -92.71 -0.82 7.20 16 39 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 40 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 41 H 0.28 15.68 8.73 -92.71 -0.81 14.87 16 42 H 0.09 4.82 5.15 -2.91 -0.01 4.81 16 43 H 0.10 4.90 6.47 -2.91 -0.02 4.88 16 44 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -86.25 370.53 1.62 -84.63 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -0.66 Total: 20.02 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 5.71 Total: -28.52 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -5.15 Total: -100.83 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.05 Total: -26.67 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 1.78 Total: 51.38 kcal Total: -86.25 1.62 -84.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594059596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.085 kcal (2) G-P(sol) polarization free energy of solvation -86.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds