Wall clock time and date at job start Wed Apr 1 2020 01:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.29113 * 126.00641 * 2 1 4 4 N 1.29014 * 110.25989 * 179.91654 * 3 2 1 5 5 C 1.32910 * 108.63645 * 359.97438 * 4 3 2 6 6 C 1.34396 * 126.01046 * 179.97438 * 2 1 3 7 7 C 1.50531 * 129.25463 * 0.25359 * 6 2 1 8 8 C 1.53432 * 108.32369 * 163.45148 * 7 6 2 9 9 C 1.53110 * 109.55665 * 49.72406 * 8 7 6 10 10 H 1.09001 * 109.43583 * 49.94904 * 9 8 7 11 11 N 1.46490 * 109.45705 * 169.90157 * 9 8 7 12 12 C 1.34776 * 120.00224 * 205.10624 * 11 9 8 13 13 O 1.21591 * 119.99733 * 359.97438 * 12 11 9 14 14 N 1.34775 * 120.00671 * 179.72486 * 12 11 9 15 15 C 1.39956 * 120.00343 * 174.91117 * 14 12 11 16 16 C 1.39289 * 119.94569 * 145.77633 * 15 14 12 17 17 C 1.38484 * 120.42833 * 179.97438 * 16 15 14 18 18 C 1.37684 * 120.31980 * 0.02562 * 17 16 15 19 19 C 1.40738 * 119.88682 * 359.97438 * 18 17 16 20 20 C 1.41409 * 120.21123 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99527 * 205.17308 * 20 19 18 22 22 C 1.39926 * 120.00091 * 25.16786 * 20 19 18 23 23 N 1.30821 * 120.00078 * 16.80319 * 22 20 19 24 24 Si 1.86804 * 120.00112 * 196.79968 * 22 20 19 25 25 H 1.48500 * 109.46896 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47349 * 120.00003 * 24 22 20 27 27 H 1.48501 * 109.47183 * 240.00477 * 24 22 20 28 28 C 1.38234 * 119.94680 * 325.50418 * 15 14 12 29 29 C 1.50602 * 129.16211 * 180.10729 * 5 4 3 30 30 H 1.08995 * 109.47236 * 270.02609 * 1 2 3 31 31 H 1.09004 * 109.47281 * 30.03102 * 1 2 3 32 32 H 1.09004 * 109.46772 * 150.03114 * 1 2 3 33 33 H 1.09007 * 109.69489 * 283.16487 * 7 6 2 34 34 H 1.08997 * 109.69520 * 43.74986 * 7 6 2 35 35 H 1.08995 * 109.46345 * 289.68966 * 8 7 6 36 36 H 1.09011 * 109.45719 * 169.74138 * 8 7 6 37 37 H 0.96999 * 120.00679 * 25.10988 * 11 9 8 38 38 H 0.97005 * 119.99602 * 354.91201 * 14 12 11 39 39 H 1.07995 * 119.78509 * 0.02562 * 16 15 14 40 40 H 1.07998 * 119.84182 * 180.02562 * 17 16 15 41 41 H 1.08009 * 120.05571 * 180.02562 * 18 17 16 42 42 H 0.97008 * 120.00014 * 179.97438 * 23 22 20 43 43 H 1.07999 * 120.15908 * 359.97438 * 28 15 14 44 44 H 1.08997 * 109.68821 * 43.78263 * 29 5 4 45 45 H 1.08996 * 109.69276 * 283.20555 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0445 0.0000 4 7 3.4657 0.6943 0.0018 5 6 3.5327 -0.6331 0.0035 6 6 2.2551 -1.0871 0.0005 7 6 1.8723 -2.5429 -0.0040 8 6 3.1013 -3.3637 -0.4163 9 6 4.3087 -2.9349 0.4221 10 1 4.0359 -2.9351 1.4774 11 7 5.4126 -3.8726 0.2031 12 6 6.3608 -4.0297 1.1479 13 8 6.3003 -3.3927 2.1818 14 7 7.3735 -4.8965 0.9488 15 6 8.4145 -4.9824 1.8804 16 6 9.0262 -6.2089 2.1283 17 6 10.0575 -6.3053 3.0475 18 6 10.4892 -5.1885 3.7274 19 6 9.8806 -3.9425 3.4873 20 6 10.3189 -2.7910 4.1812 21 1 9.6458 -1.9588 4.3257 22 6 11.6245 -2.7299 4.6808 23 7 12.5328 -3.5624 4.2412 24 14 12.0706 -1.4594 5.9756 25 1 10.8735 -0.6432 6.3013 26 1 12.5489 -2.1483 7.2010 27 1 13.1440 -0.5761 5.4533 28 6 8.8376 -3.8488 2.5488 29 6 4.7469 -1.5241 0.0082 30 1 -0.3633 0.0005 1.0276 31 1 -0.3634 0.8897 -0.5143 32 1 -0.3633 -0.8903 -0.5134 33 1 1.5492 -2.8409 0.9935 34 1 1.0645 -2.7081 -0.7169 35 1 3.3137 -3.1944 -1.4718 36 1 2.9027 -4.4228 -0.2514 37 1 5.4612 -4.3805 -0.6219 38 1 7.3808 -5.4608 0.1599 39 1 8.6947 -7.0904 1.5996 40 1 10.5254 -7.2610 3.2321 41 1 11.2941 -5.2685 4.4431 42 1 13.4380 -3.5198 4.5873 43 1 8.3671 -2.8965 2.3537 44 1 5.4792 -1.1431 0.7199 45 1 5.1846 -1.5535 -0.9896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594117446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:38 Heat of formation + Delta-G solvation = 90.071725 kcal Electronic energy + Delta-G solvation = -28593.024987 eV Core-core repulsion = 24612.311197 eV Total energy + Delta-G solvation = -3980.713790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.58963 -40.06694 -37.99114 -36.84485 -35.17405 -34.35594 -33.67883 -32.87938 -30.59248 -29.74929 -29.63065 -28.13635 -27.58928 -25.23119 -24.44084 -22.95917 -21.61282 -21.49618 -20.79292 -20.21262 -19.82630 -17.97191 -17.65380 -17.27820 -17.05588 -15.95483 -15.43644 -15.33593 -14.73114 -14.56243 -14.40814 -14.33295 -14.12514 -14.06214 -13.90189 -13.46094 -13.13744 -12.98232 -12.86884 -12.51064 -12.32976 -12.08796 -11.81382 -11.59159 -11.55757 -11.20898 -11.12849 -11.05938 -10.84916 -10.73484 -10.39361 -10.16271 -10.15578 -9.64501 -9.43806 -9.09737 -9.04672 -8.96482 -8.93530 -7.37516 -6.83020 -6.63996 -4.26298 1.33515 2.06803 2.40266 2.75240 2.87921 3.04799 3.15357 3.22834 3.26834 3.71096 3.89302 4.03136 4.13459 4.32545 4.39333 4.49673 4.53296 4.65587 4.72414 4.79690 4.85501 4.91471 5.12253 5.18637 5.32072 5.44876 5.56087 5.73732 5.78542 5.89142 5.95935 6.18950 6.29565 6.33237 6.45674 6.56609 6.82904 6.85265 7.11154 7.16379 7.31061 7.40709 7.75291 7.88901 8.06182 8.18693 8.31379 8.34529 8.48605 8.74012 8.96476 9.04565 9.09929 10.28406 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014047 B = 0.002485 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.770233 B =11266.156720 C =12932.370971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.287 5.287 3 N -0.098 5.098 4 N -0.257 5.257 5 C -0.004 4.004 6 C -0.028 4.028 7 C -0.037 4.037 8 C -0.122 4.122 9 C 0.169 3.831 10 H 0.095 0.905 11 N -0.746 5.746 12 C 0.698 3.302 13 O -0.562 6.562 14 N -0.681 5.681 15 C 0.169 3.831 16 C -0.264 4.264 17 C -0.092 4.092 18 C -0.174 4.174 19 C 0.120 3.880 20 C -0.456 4.456 21 H 0.079 0.921 22 C 0.075 3.925 23 N -0.796 5.796 24 Si 0.906 3.094 25 H -0.260 1.260 26 H -0.273 1.273 27 H -0.275 1.275 28 C -0.208 4.208 29 C -0.048 4.048 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.394 0.606 38 H 0.394 0.606 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.118 0.882 42 H 0.278 0.722 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.290 -1.511 -11.877 25.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.079 5.079 3 N -0.076 5.076 4 N -0.122 5.122 5 C -0.144 4.144 6 C -0.162 4.162 7 C -0.077 4.077 8 C -0.161 4.161 9 C 0.063 3.937 10 H 0.113 0.887 11 N -0.402 5.402 12 C 0.399 3.601 13 O -0.437 6.437 14 N -0.327 5.327 15 C 0.077 3.923 16 C -0.285 4.285 17 C -0.111 4.111 18 C -0.194 4.194 19 C 0.117 3.883 20 C -0.486 4.486 21 H 0.097 0.903 22 C -0.141 4.141 23 N -0.422 5.422 24 Si 0.731 3.269 25 H -0.183 1.183 26 H -0.198 1.198 27 H -0.201 1.201 28 C -0.230 4.230 29 C -0.089 4.089 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.227 0.773 38 H 0.227 0.773 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.136 0.864 42 H 0.089 0.911 43 H 0.125 0.875 44 H 0.114 0.886 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -22.110 0.656 -10.896 24.658 hybrid contribution 0.073 -0.989 -0.310 1.039 sum -22.038 -0.333 -11.206 24.725 Atomic orbital electron populations 1.22245 0.72952 1.05759 1.05067 1.46825 1.09056 1.04708 1.47296 1.78608 0.96183 1.11276 1.21505 1.74850 1.09324 1.12055 1.15941 1.21604 0.94690 0.91347 1.06801 1.21822 0.91266 0.92250 1.10840 1.20076 0.98578 0.85781 1.03227 1.21854 0.93260 1.00308 1.00681 1.20703 0.84838 0.86976 1.01204 0.88711 1.45093 1.27234 1.47023 1.20894 1.15976 0.79556 0.80997 0.83589 1.90998 1.76603 1.49630 1.26482 1.42578 1.22533 1.41602 1.25965 1.17212 0.88199 0.94267 0.92668 1.19994 1.05739 0.94116 1.08680 1.20436 0.96462 0.97261 0.96980 1.21337 1.03396 0.91611 1.03009 1.17498 0.89321 0.92900 0.88628 1.19616 0.96779 1.01967 1.30261 0.90332 1.25892 0.96158 0.96366 0.95732 1.69838 1.03067 1.33760 1.35537 0.86288 0.79235 0.80727 0.80655 1.18333 1.19773 1.20063 1.21002 1.03418 0.95993 1.02606 1.20426 0.93124 0.91767 1.03563 0.88986 0.88018 0.88430 0.89216 0.89711 0.90538 0.89518 0.77271 0.77296 0.89425 0.89132 0.86377 0.91083 0.87493 0.88591 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.32 11.27 59.85 0.67 0.99 16 2 N -0.29 -2.81 3.73 -64.01 -0.24 -3.05 16 3 N -0.10 -1.36 13.19 60.35 0.80 -0.56 16 4 N -0.26 -4.07 12.40 33.17 0.41 -3.66 16 5 C 0.00 -0.05 7.11 -83.12 -0.59 -0.64 16 6 C -0.03 -0.28 6.76 -82.50 -0.56 -0.84 16 7 C -0.04 -0.21 5.97 -27.74 -0.17 -0.38 16 8 C -0.12 -0.77 5.37 -26.45 -0.14 -0.91 16 9 C 0.17 1.81 2.42 -67.66 -0.16 1.65 16 10 H 0.09 1.25 7.55 -51.93 -0.39 0.86 16 11 N -0.75 -8.57 5.08 -58.41 -0.30 -8.87 16 12 C 0.70 12.16 8.25 -86.92 -0.72 11.45 16 13 O -0.56 -12.66 13.77 5.29 0.07 -12.59 16 14 N -0.68 -11.88 5.34 -14.27 -0.08 -11.95 16 15 C 0.17 3.84 6.25 -83.76 -0.52 3.31 16 16 C -0.26 -5.82 9.97 -39.10 -0.39 -6.21 16 17 C -0.09 -2.18 10.02 -39.69 -0.40 -2.57 16 18 C -0.17 -4.63 8.69 -38.84 -0.34 -4.97 16 19 C 0.12 3.35 5.57 -106.85 -0.59 2.75 16 20 C -0.46 -12.82 9.05 -37.74 -0.34 -13.16 16 21 H 0.08 2.20 7.90 -52.49 -0.41 1.78 16 22 C 0.08 1.97 5.16 -17.35 -0.09 1.89 16 23 N -0.80 -21.11 10.94 55.55 0.61 -20.50 16 24 Si 0.91 19.61 29.59 -169.99 -5.03 14.58 16 25 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 27 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 28 C -0.21 -5.49 8.39 -38.69 -0.32 -5.82 16 29 C -0.05 -0.61 5.88 -27.71 -0.16 -0.77 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.11 7.71 -51.93 -0.40 -0.29 16 33 H 0.09 0.47 8.14 -51.92 -0.42 0.04 16 34 H 0.08 0.27 7.87 -51.93 -0.41 -0.14 16 35 H 0.08 0.42 8.12 -51.93 -0.42 -0.01 16 36 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 37 H 0.39 3.09 8.62 -40.82 -0.35 2.73 16 38 H 0.39 5.16 8.84 -40.82 -0.36 4.80 16 39 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 40 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 41 H 0.12 3.23 6.17 -52.48 -0.32 2.91 16 42 H 0.28 6.68 8.30 -40.82 -0.34 6.35 16 43 H 0.11 2.93 6.49 -52.49 -0.34 2.59 16 44 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 45 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 374.02 15.07 5.64 5.64 Total: -1.00 -36.65 374.02 -8.87 -45.53 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -5.93 Total: 9.65 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -4.83 Total: -14.22 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 1.20 Total: -48.59 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.07 Total: -12.59 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.65 -8.87 -45.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594117446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.600 kcal (2) G-P(sol) polarization free energy of solvation -36.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds