Wall clock time and date at job start Wed Apr 1 2020 01:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.29113 * 126.00641 * 2 1 4 4 N 1.29014 * 110.25989 * 179.91654 * 3 2 1 5 5 C 1.32910 * 108.63645 * 359.97438 * 4 3 2 6 6 C 1.34396 * 126.01046 * 179.97438 * 2 1 3 7 7 C 1.50531 * 129.25463 * 0.25359 * 6 2 1 8 8 C 1.53432 * 108.32369 * 163.45148 * 7 6 2 9 9 C 1.53110 * 109.55665 * 49.72406 * 8 7 6 10 10 H 1.09001 * 109.43583 * 49.94904 * 9 8 7 11 11 N 1.46490 * 109.45705 * 169.90157 * 9 8 7 12 12 C 1.34776 * 120.00224 * 205.10624 * 11 9 8 13 13 O 1.21591 * 119.99733 * 359.97438 * 12 11 9 14 14 N 1.34775 * 120.00671 * 179.72486 * 12 11 9 15 15 C 1.39956 * 120.00343 * 174.91117 * 14 12 11 16 16 C 1.39289 * 119.94569 * 145.77633 * 15 14 12 17 17 C 1.38484 * 120.42833 * 179.97438 * 16 15 14 18 18 C 1.37684 * 120.31980 * 0.02562 * 17 16 15 19 19 C 1.40738 * 119.88682 * 359.97438 * 18 17 16 20 20 C 1.41409 * 120.21123 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99527 * 205.17308 * 20 19 18 22 22 C 1.39926 * 120.00091 * 25.16786 * 20 19 18 23 23 N 1.30821 * 120.00078 * 16.80319 * 22 20 19 24 24 Si 1.86804 * 120.00112 * 196.79968 * 22 20 19 25 25 H 1.48500 * 109.46896 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47349 * 120.00003 * 24 22 20 27 27 H 1.48501 * 109.47183 * 240.00477 * 24 22 20 28 28 C 1.38234 * 119.94680 * 325.50418 * 15 14 12 29 29 C 1.50602 * 129.16211 * 180.10729 * 5 4 3 30 30 H 1.08995 * 109.47236 * 270.02609 * 1 2 3 31 31 H 1.09004 * 109.47281 * 30.03102 * 1 2 3 32 32 H 1.09004 * 109.46772 * 150.03114 * 1 2 3 33 33 H 1.09007 * 109.69489 * 283.16487 * 7 6 2 34 34 H 1.08997 * 109.69520 * 43.74986 * 7 6 2 35 35 H 1.08995 * 109.46345 * 289.68966 * 8 7 6 36 36 H 1.09011 * 109.45719 * 169.74138 * 8 7 6 37 37 H 0.96999 * 120.00679 * 25.10988 * 11 9 8 38 38 H 0.97005 * 119.99602 * 354.91201 * 14 12 11 39 39 H 1.07995 * 119.78509 * 0.02562 * 16 15 14 40 40 H 1.07998 * 119.84182 * 180.02562 * 17 16 15 41 41 H 1.08009 * 120.05571 * 180.02562 * 18 17 16 42 42 H 0.97008 * 120.00014 * 179.97438 * 23 22 20 43 43 H 1.07999 * 120.15908 * 359.97438 * 28 15 14 44 44 H 1.08997 * 109.68821 * 43.78263 * 29 5 4 45 45 H 1.08996 * 109.69276 * 283.20555 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0445 0.0000 4 7 3.4657 0.6943 0.0018 5 6 3.5327 -0.6331 0.0035 6 6 2.2551 -1.0871 0.0005 7 6 1.8723 -2.5429 -0.0040 8 6 3.1013 -3.3637 -0.4163 9 6 4.3087 -2.9349 0.4221 10 1 4.0359 -2.9351 1.4774 11 7 5.4126 -3.8726 0.2031 12 6 6.3608 -4.0297 1.1479 13 8 6.3003 -3.3927 2.1818 14 7 7.3735 -4.8965 0.9488 15 6 8.4145 -4.9824 1.8804 16 6 9.0262 -6.2089 2.1283 17 6 10.0575 -6.3053 3.0475 18 6 10.4892 -5.1885 3.7274 19 6 9.8806 -3.9425 3.4873 20 6 10.3189 -2.7910 4.1812 21 1 9.6458 -1.9588 4.3257 22 6 11.6245 -2.7299 4.6808 23 7 12.5328 -3.5624 4.2412 24 14 12.0706 -1.4594 5.9756 25 1 10.8735 -0.6432 6.3013 26 1 12.5489 -2.1483 7.2010 27 1 13.1440 -0.5761 5.4533 28 6 8.8376 -3.8488 2.5488 29 6 4.7469 -1.5241 0.0082 30 1 -0.3633 0.0005 1.0276 31 1 -0.3634 0.8897 -0.5143 32 1 -0.3633 -0.8903 -0.5134 33 1 1.5492 -2.8409 0.9935 34 1 1.0645 -2.7081 -0.7169 35 1 3.3137 -3.1944 -1.4718 36 1 2.9027 -4.4228 -0.2514 37 1 5.4612 -4.3805 -0.6219 38 1 7.3808 -5.4608 0.1599 39 1 8.6947 -7.0904 1.5996 40 1 10.5254 -7.2610 3.2321 41 1 11.2941 -5.2685 4.4431 42 1 13.4380 -3.5198 4.5873 43 1 8.3671 -2.8965 2.3537 44 1 5.4792 -1.1431 0.7199 45 1 5.1846 -1.5535 -0.9896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594117446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:37 Heat of formation + Delta-G solvation = 62.838815 kcal Electronic energy + Delta-G solvation = -28594.205895 eV Core-core repulsion = 24612.311197 eV Total energy + Delta-G solvation = -3981.894698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.44558 -41.47966 -39.41458 -38.21342 -36.13020 -35.91863 -35.00743 -34.46681 -31.71817 -31.34036 -30.75754 -29.28113 -28.63201 -27.22886 -25.30923 -23.95253 -23.01816 -22.64473 -22.37810 -21.59523 -20.88075 -19.58056 -19.12557 -18.14932 -17.85559 -17.44522 -16.99822 -16.59300 -16.42785 -16.06063 -15.59400 -15.47642 -15.10243 -14.91772 -14.72579 -14.66083 -14.63653 -14.07814 -13.96407 -13.60976 -13.50886 -13.23547 -13.07020 -12.96337 -12.88492 -12.78131 -12.70389 -12.27232 -12.16950 -11.98110 -11.89476 -11.62581 -11.52267 -11.21132 -10.96538 -10.95081 -10.75306 -10.18163 -9.88491 -9.35975 -8.70235 -8.55918 -6.35090 0.54487 0.95032 1.05729 1.35135 1.40930 1.47138 1.48791 1.50645 1.70919 2.21276 2.23381 2.75716 3.10942 3.33952 3.63418 3.72871 3.76353 3.80755 3.81042 4.15209 4.22957 4.29273 4.43380 4.50954 4.55332 4.57794 4.68226 4.69734 4.79749 4.89898 4.97090 5.07752 5.09995 5.13598 5.15645 5.18122 5.22240 5.27926 5.35787 5.52061 5.67336 5.77425 5.86939 6.09424 6.14782 6.24834 6.40152 6.71930 6.96746 7.04099 7.18704 7.43189 7.67040 8.34467 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014047 B = 0.002485 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.770233 B =11266.156720 C =12932.370971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.276 5.276 3 N -0.133 5.133 4 N -0.312 5.312 5 C -0.039 4.039 6 C -0.006 4.006 7 C -0.034 4.034 8 C -0.111 4.111 9 C 0.171 3.829 10 H 0.067 0.933 11 N -0.716 5.716 12 C 0.694 3.306 13 O -0.619 6.619 14 N -0.668 5.668 15 C 0.179 3.821 16 C -0.248 4.248 17 C -0.090 4.090 18 C -0.200 4.200 19 C 0.088 3.912 20 C -0.503 4.503 21 H 0.057 0.943 22 C 0.039 3.961 23 N -0.821 5.821 24 Si 0.978 3.022 25 H -0.269 1.269 26 H -0.256 1.256 27 H -0.262 1.262 28 C -0.237 4.237 29 C -0.042 4.042 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.137 0.863 33 H 0.103 0.897 34 H 0.131 0.869 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.418 0.582 38 H 0.420 0.580 39 H 0.136 0.864 40 H 0.125 0.875 41 H 0.103 0.897 42 H 0.289 0.711 43 H 0.079 0.921 44 H 0.044 0.956 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.033 -4.615 -13.802 28.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.069 5.069 3 N -0.111 5.111 4 N -0.175 5.175 5 C -0.181 4.181 6 C -0.142 4.142 7 C -0.073 4.073 8 C -0.149 4.149 9 C 0.065 3.935 10 H 0.085 0.915 11 N -0.373 5.373 12 C 0.395 3.605 13 O -0.498 6.498 14 N -0.317 5.317 15 C 0.084 3.916 16 C -0.269 4.269 17 C -0.109 4.109 18 C -0.220 4.220 19 C 0.085 3.915 20 C -0.533 4.533 21 H 0.075 0.925 22 C -0.176 4.176 23 N -0.448 5.448 24 Si 0.799 3.201 25 H -0.193 1.193 26 H -0.180 1.180 27 H -0.186 1.186 28 C -0.259 4.259 29 C -0.083 4.083 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.156 0.844 33 H 0.122 0.878 34 H 0.149 0.851 35 H 0.113 0.887 36 H 0.135 0.865 37 H 0.256 0.744 38 H 0.258 0.742 39 H 0.153 0.847 40 H 0.143 0.857 41 H 0.121 0.879 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.063 0.937 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -24.913 -2.469 -12.918 28.171 hybrid contribution 0.750 -0.104 0.171 0.776 sum -24.163 -2.572 -12.747 27.440 Atomic orbital electron populations 1.22824 0.69474 1.08209 1.06815 1.47303 1.10871 1.03760 1.44942 1.78481 0.96048 1.12990 1.23535 1.74756 1.10921 1.13966 1.17869 1.21791 0.96372 0.90905 1.09030 1.22413 0.89898 0.94168 1.07699 1.20381 0.99460 0.82076 1.05428 1.21865 0.90649 1.01904 1.00493 1.20805 0.86144 0.85672 1.00883 0.91479 1.44810 1.25709 1.46454 1.20333 1.16238 0.80204 0.80237 0.83827 1.90983 1.77905 1.51491 1.29375 1.42301 1.21227 1.42197 1.25973 1.17252 0.88608 0.93414 0.92280 1.20456 1.04078 0.95057 1.07351 1.20836 0.96391 0.97567 0.96102 1.21294 1.04019 0.92298 1.04367 1.17830 0.90444 0.93727 0.89496 1.19719 0.98022 1.02197 1.33367 0.92479 1.26643 0.95222 0.98552 0.97186 1.69856 1.03617 1.35007 1.36281 0.85230 0.78655 0.78078 0.78132 1.19334 1.18029 1.18608 1.20935 1.04178 0.96508 1.04305 1.20300 0.92410 0.93103 1.02496 0.87504 0.87256 0.84444 0.87839 0.85101 0.88682 0.86525 0.74386 0.74243 0.84665 0.85745 0.87858 0.90034 0.90269 0.93732 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 11.27 127.77 1.44 1.75 16 2 N -0.28 -5.02 3.73 -356.42 -1.33 -6.34 16 3 N -0.13 -3.81 13.19 37.02 0.49 -3.32 16 4 N -0.31 -10.58 12.40 -48.99 -0.61 -11.18 16 5 C -0.04 -1.07 7.11 41.75 0.30 -0.77 16 6 C -0.01 -0.11 6.76 41.50 0.28 0.17 16 7 C -0.03 -0.24 5.97 29.94 0.18 -0.06 16 8 C -0.11 -0.91 5.37 30.78 0.17 -0.74 16 9 C 0.17 3.52 2.42 45.17 0.11 3.63 16 10 H 0.07 1.80 7.55 -2.39 -0.02 1.78 16 11 N -0.72 -15.34 5.08 -456.98 -2.32 -17.66 16 12 C 0.69 24.26 8.25 179.06 1.48 25.74 16 13 O -0.62 -29.52 13.77 -4.00 -0.06 -29.57 16 14 N -0.67 -22.41 5.34 -317.32 -1.70 -24.11 16 15 C 0.18 8.08 6.25 38.10 0.24 8.32 16 16 C -0.25 -10.31 9.97 22.58 0.23 -10.09 16 17 C -0.09 -4.13 10.02 22.20 0.22 -3.91 16 18 C -0.20 -10.97 8.69 22.75 0.20 -10.77 16 19 C 0.09 5.22 5.57 -21.31 -0.12 5.10 16 20 C -0.50 -30.45 9.05 23.46 0.21 -30.24 16 21 H 0.06 3.53 7.90 -2.91 -0.02 3.51 16 22 C 0.04 2.11 5.16 85.25 0.44 2.55 16 23 N -0.82 -45.05 10.94 21.82 0.24 -44.81 16 24 Si 0.98 41.92 29.59 68.60 2.03 43.95 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 26 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 27 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 28 C -0.24 -13.23 8.39 22.85 0.19 -13.04 16 29 C -0.04 -1.14 5.88 29.96 0.18 -0.96 16 30 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.14 -0.43 7.71 -2.38 -0.02 -0.45 16 33 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.13 -0.13 7.87 -2.39 -0.02 -0.15 16 35 H 0.09 0.53 8.12 -2.39 -0.02 0.51 16 36 H 0.12 0.41 8.14 -2.38 -0.02 0.39 16 37 H 0.42 5.05 8.62 -92.71 -0.80 4.25 16 38 H 0.42 9.57 8.84 -92.70 -0.82 8.75 16 39 H 0.14 4.37 8.06 -2.91 -0.02 4.34 16 40 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 41 H 0.10 5.88 6.17 -2.91 -0.02 5.86 16 42 H 0.29 14.14 8.30 -92.70 -0.77 13.37 16 43 H 0.08 4.76 6.49 -2.91 -0.02 4.74 16 44 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -92.14 374.02 1.92 -90.23 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: -0.56 Total: 26.16 kcal Atomic # 6 Polarization: -29.07 SS G_CDS: 5.73 Total: -23.34 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -5.23 Total: -107.42 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.06 Total: -29.57 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -92.14 1.92 -90.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594117446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.065 kcal (2) G-P(sol) polarization free energy of solvation -92.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds