Wall clock time and date at job start Wed Apr 1 2020 01:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46926 * 2 1 4 4 C 1.46492 * 120.00308 * 274.25120 * 3 2 1 5 5 C 1.50701 * 109.47437 * 280.60313 * 4 3 2 6 6 H 1.08005 * 119.99528 * 4.21562 * 5 4 3 7 7 C 1.37874 * 120.00249 * 184.21072 * 5 4 3 8 8 N 1.31507 * 120.00129 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99859 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47159 * 59.99914 * 9 7 5 11 11 H 1.48497 * 109.47011 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47132 * 300.00234 * 9 7 5 13 13 S 1.65601 * 119.99748 * 94.25120 * 3 2 1 14 14 O 1.42099 * 106.40385 * 330.36592 * 13 3 2 15 15 O 1.42094 * 106.40255 * 197.44342 * 13 3 2 16 16 N 1.65606 * 107.21743 * 83.90299 * 13 3 2 17 17 C 1.46499 * 120.00092 * 64.95120 * 16 13 3 18 18 C 1.52994 * 109.47141 * 164.80774 * 17 16 13 19 19 C 1.50697 * 109.47304 * 180.02562 * 18 17 16 20 20 N 1.31893 * 119.61607 * 269.72765 * 19 18 17 21 21 C 1.31858 * 121.72254 * 179.70522 * 20 19 18 22 22 C 1.38221 * 120.76430 * 0.56951 * 21 20 19 23 23 C 1.50699 * 120.41872 * 179.74501 * 22 21 20 24 24 C 1.38627 * 119.16151 * 359.72120 * 22 21 20 25 25 C 1.38182 * 119.62146 * 89.99522 * 19 18 17 26 26 C 1.50699 * 120.41324 * 0.03080 * 25 19 18 27 27 H 1.09007 * 109.47010 * 65.08187 * 1 2 3 28 28 H 1.08996 * 109.46648 * 185.07933 * 1 2 3 29 29 H 1.08994 * 109.46945 * 305.08449 * 1 2 3 30 30 H 1.08993 * 109.47201 * 240.00496 * 2 1 3 31 31 H 1.08994 * 109.46871 * 120.00062 * 2 1 3 32 32 H 1.08999 * 109.47298 * 40.60182 * 4 3 2 33 33 H 1.08999 * 109.47179 * 160.60454 * 4 3 2 34 34 H 0.97006 * 120.00303 * 180.02562 * 8 7 5 35 35 H 0.97003 * 119.99674 * 244.95100 * 16 13 3 36 36 H 1.09004 * 109.47032 * 44.80469 * 17 16 13 37 37 H 1.09001 * 109.46930 * 284.80961 * 17 16 13 38 38 H 1.09004 * 109.47406 * 59.99924 * 18 17 16 39 39 H 1.09001 * 109.47361 * 299.99923 * 18 17 16 40 40 H 1.08000 * 119.61101 * 180.26848 * 21 20 19 41 41 H 1.08994 * 109.47410 * 269.97975 * 23 22 21 42 42 H 1.08998 * 109.46942 * 29.97764 * 23 22 21 43 43 H 1.09000 * 109.47163 * 149.97270 * 23 22 21 44 44 H 1.08009 * 120.78939 * 180.02562 * 24 22 21 45 45 H 1.09000 * 109.47749 * 89.99850 * 26 25 19 46 46 H 1.09010 * 109.46880 * 209.99712 * 26 25 19 47 47 H 1.08997 * 109.47381 * 329.98928 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1738 2.1033 -1.2651 5 6 3.4556 1.6765 -1.9329 6 1 4.0567 0.8923 -1.4966 7 6 3.8610 2.2869 -3.1008 8 7 3.1293 3.2419 -3.6318 9 14 5.4495 1.7573 -3.9289 10 1 5.3654 0.3184 -4.2865 11 1 5.6580 2.5614 -5.1597 12 1 6.5874 1.9704 -2.9989 13 16 2.3945 2.1264 1.4302 14 8 1.5513 1.5489 2.4175 15 8 2.4314 3.5207 1.1587 16 7 3.9421 1.6849 1.8208 17 6 5.0592 2.0990 0.9682 18 6 6.3760 1.9033 1.7222 19 6 7.5251 2.3298 0.8455 20 7 8.1048 1.4469 0.0554 21 6 9.1093 1.7761 -0.7328 22 6 9.6012 3.0677 -0.7493 23 6 10.7534 3.4339 -1.6490 24 6 9.0210 4.0220 0.0719 25 6 7.9629 3.6399 0.8826 26 6 7.2993 4.6405 1.7933 27 1 -0.3633 0.4330 -0.9321 28 1 -0.3632 -1.0236 0.0910 29 1 -0.3633 0.5907 0.8409 30 1 1.8934 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3311 1.8772 -1.9184 33 1 2.2052 3.1752 -1.0702 34 1 3.4143 3.6712 -4.4538 35 1 4.1089 1.1522 2.6141 36 1 4.9445 3.1503 0.7040 37 1 5.0669 1.4951 0.0608 38 1 6.4908 0.8520 1.9863 39 1 6.3683 2.5071 2.6296 40 1 9.5559 1.0265 -1.3693 41 1 11.6925 3.2802 -1.1176 42 1 10.7329 2.8057 -2.5395 43 1 10.6680 4.4806 -1.9408 44 1 9.3842 5.0392 0.0797 45 1 7.8006 4.6395 2.7611 46 1 7.3657 5.6345 1.3507 47 1 6.2515 4.3715 1.9265 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594474589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:26 Heat of formation + Delta-G solvation = -62.328553 kcal Electronic energy + Delta-G solvation = -29077.644946 eV Core-core repulsion = 25193.473784 eV Total energy + Delta-G solvation = -3884.171162 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.40036 -36.65791 -36.08781 -35.84266 -35.16955 -33.66768 -33.51866 -32.68242 -29.97398 -29.89493 -27.41496 -26.61848 -26.20778 -23.36933 -23.11922 -22.14653 -21.64409 -20.62582 -18.80345 -17.16080 -16.96589 -16.75573 -16.40330 -16.05667 -15.61590 -15.11160 -14.59950 -14.38405 -14.24112 -14.14461 -13.73747 -13.32468 -13.21837 -13.07423 -12.92342 -12.77356 -12.59433 -12.53517 -12.36114 -12.03287 -12.02574 -11.85976 -11.65071 -11.50396 -11.29007 -11.26831 -11.25873 -11.03549 -10.99787 -10.91999 -10.47556 -10.33898 -9.99919 -9.77353 -9.47413 -9.29737 -8.96041 -8.51725 -8.46806 -8.02656 -6.09042 -4.15120 1.13206 1.33999 1.39905 3.28804 3.32456 3.36978 3.54326 3.82868 4.18497 4.38690 4.42085 4.69963 4.77943 4.90911 5.01751 5.08659 5.17415 5.24735 5.32139 5.41594 5.43725 5.44653 5.47896 5.58513 5.61263 5.75948 5.78531 5.80190 5.84513 5.97746 6.00213 6.09073 6.16343 6.22315 6.30924 6.36579 6.43094 6.56972 6.70903 6.75492 6.82020 7.31559 7.41305 7.48624 7.71685 7.88433 8.13441 8.18363 8.89307 9.50869 10.98640 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010774 B = 0.004804 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.225479 B = 5826.964640 C = 7425.249400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.991 5.991 4 C 0.244 3.756 5 C -0.537 4.537 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.888 5.888 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.272 1.272 13 S 2.785 3.215 14 O -1.001 7.001 15 O -0.979 6.979 16 N -1.131 6.131 17 C 0.126 3.874 18 C -0.077 4.077 19 C 0.131 3.869 20 N -0.469 5.469 21 C 0.097 3.903 22 C -0.143 4.143 23 C -0.107 4.107 24 C -0.078 4.078 25 C -0.125 4.125 26 C -0.117 4.117 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.034 0.966 33 H 0.055 0.945 34 H 0.264 0.736 35 H 0.406 0.594 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.151 0.849 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.132 0.868 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.746 -1.498 8.644 13.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.833 5.833 4 C 0.122 3.878 5 C -0.576 4.576 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.526 5.526 9 Si 0.714 3.286 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.197 1.197 13 S 2.793 3.207 14 O -0.985 6.985 15 O -0.963 6.963 16 N -0.890 5.890 17 C -0.001 4.001 18 C -0.116 4.116 19 C -0.007 4.007 20 N -0.176 5.176 21 C -0.061 4.061 22 C -0.145 4.145 23 C -0.165 4.165 24 C -0.104 4.104 25 C -0.127 4.127 26 C -0.174 4.174 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.238 0.762 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.168 0.832 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.150 0.850 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.816 -1.520 8.798 13.269 hybrid contribution 1.627 0.085 -0.714 1.779 sum 11.444 -1.435 8.084 14.084 Atomic orbital electron populations 1.22210 0.96970 1.01281 1.02427 1.20946 0.93583 0.82880 1.02045 1.57705 1.78706 1.23007 1.23881 1.19207 0.97110 0.92631 0.78893 1.21488 1.07226 1.20459 1.08474 0.91853 1.24906 0.96934 0.94728 0.97001 1.69924 1.38127 1.24236 1.20345 0.86721 0.84256 0.78638 0.78970 1.20211 1.21414 1.19693 1.01727 0.72565 0.73744 0.72632 1.93548 1.65069 1.79786 1.60083 1.93572 1.86547 1.31023 1.85122 1.56001 1.25091 1.70701 1.37169 1.21302 0.83419 1.01882 0.93469 1.20739 0.90961 1.03063 0.96882 1.20882 0.95657 0.89284 0.94911 1.67460 1.08041 1.37173 1.04963 1.22564 0.92800 0.94508 0.96215 1.20882 0.99402 0.95100 0.99106 1.20688 0.95333 1.02289 0.98157 1.21323 0.94920 0.99440 0.94696 1.20718 0.97108 0.95732 0.99130 1.20850 1.01284 0.97394 0.97876 0.92199 0.92481 0.92475 0.90108 0.92217 0.94818 0.92661 0.92631 0.76184 0.90279 0.89131 0.89573 0.89794 0.83162 0.91152 0.91246 0.91410 0.85038 0.91020 0.91150 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 10.24 37.16 0.38 -2.35 16 2 C 0.13 2.31 6.01 -4.04 -0.02 2.29 16 3 N -0.99 -20.39 2.84 -115.67 -0.33 -20.71 16 4 C 0.24 6.02 5.47 -5.20 -0.03 5.99 16 5 C -0.54 -13.91 8.48 -34.44 -0.29 -14.20 16 6 H 0.06 1.59 6.51 -52.48 -0.34 1.25 16 7 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 8 N -0.89 -25.41 13.29 55.43 0.74 -24.68 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 S 2.79 54.87 6.07 -107.50 -0.65 54.22 16 14 O -1.00 -20.23 17.09 -57.17 -0.98 -21.20 16 15 O -0.98 -22.66 16.01 -57.17 -0.92 -23.57 16 16 N -1.13 -18.12 6.05 -10.61 -0.06 -18.19 16 17 C 0.13 2.16 6.05 -4.05 -0.02 2.14 16 18 C -0.08 -1.08 4.96 -27.89 -0.14 -1.21 16 19 C 0.13 2.04 6.03 -82.59 -0.50 1.55 16 20 N -0.47 -7.86 10.27 -9.47 -0.10 -7.96 16 21 C 0.10 1.42 10.86 -17.55 -0.19 1.23 16 22 C -0.14 -1.85 5.90 -104.49 -0.62 -2.47 16 23 C -0.11 -1.01 10.04 36.00 0.36 -0.65 16 24 C -0.08 -1.00 9.54 -39.28 -0.37 -1.38 16 25 C -0.12 -1.74 5.90 -104.48 -0.62 -2.36 16 26 C -0.12 -1.34 9.21 36.00 0.33 -1.01 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.96 7.88 -51.93 -0.41 0.55 16 30 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 31 H 0.06 0.92 7.80 -51.93 -0.41 0.52 16 32 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.51 6.77 -51.93 -0.35 1.16 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.41 5.17 8.66 -34.47 -0.30 4.88 16 36 H 0.08 1.50 7.02 -51.93 -0.36 1.13 16 37 H 0.09 1.80 5.93 -51.93 -0.31 1.49 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.08 0.97 6.69 -51.93 -0.35 0.62 16 40 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 43 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 44 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.74 8.10 -51.92 -0.42 0.32 16 47 H 0.08 0.99 5.87 -51.93 -0.31 0.69 16 LS Contribution 395.39 15.07 5.96 5.96 Total: -1.00 -33.26 395.39 -10.52 -43.78 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -7.33 Total: 7.01 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -1.83 Total: -10.69 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: 0.25 Total: -71.53 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -1.89 Total: -44.78 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 54.87 SS G_CDS: -0.65 Total: 54.22 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.26 -10.52 -43.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594474589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.547 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds