Wall clock time and date at job start Wed Apr 1 2020 01:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46926 * 2 1 4 4 C 1.46492 * 120.00308 * 274.25120 * 3 2 1 5 5 C 1.50701 * 109.47437 * 280.60313 * 4 3 2 6 6 H 1.08005 * 119.99528 * 4.21562 * 5 4 3 7 7 C 1.37874 * 120.00249 * 184.21072 * 5 4 3 8 8 N 1.31507 * 120.00129 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99859 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47159 * 59.99914 * 9 7 5 11 11 H 1.48497 * 109.47011 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47132 * 300.00234 * 9 7 5 13 13 S 1.65601 * 119.99748 * 94.25120 * 3 2 1 14 14 O 1.42099 * 106.40385 * 330.36592 * 13 3 2 15 15 O 1.42094 * 106.40255 * 197.44342 * 13 3 2 16 16 N 1.65606 * 107.21743 * 83.90299 * 13 3 2 17 17 C 1.46499 * 120.00092 * 64.95120 * 16 13 3 18 18 C 1.52994 * 109.47141 * 164.80774 * 17 16 13 19 19 C 1.50697 * 109.47304 * 180.02562 * 18 17 16 20 20 N 1.31893 * 119.61607 * 269.72765 * 19 18 17 21 21 C 1.31858 * 121.72254 * 179.70522 * 20 19 18 22 22 C 1.38221 * 120.76430 * 0.56951 * 21 20 19 23 23 C 1.50699 * 120.41872 * 179.74501 * 22 21 20 24 24 C 1.38627 * 119.16151 * 359.72120 * 22 21 20 25 25 C 1.38182 * 119.62146 * 89.99522 * 19 18 17 26 26 C 1.50699 * 120.41324 * 0.03080 * 25 19 18 27 27 H 1.09007 * 109.47010 * 65.08187 * 1 2 3 28 28 H 1.08996 * 109.46648 * 185.07933 * 1 2 3 29 29 H 1.08994 * 109.46945 * 305.08449 * 1 2 3 30 30 H 1.08993 * 109.47201 * 240.00496 * 2 1 3 31 31 H 1.08994 * 109.46871 * 120.00062 * 2 1 3 32 32 H 1.08999 * 109.47298 * 40.60182 * 4 3 2 33 33 H 1.08999 * 109.47179 * 160.60454 * 4 3 2 34 34 H 0.97006 * 120.00303 * 180.02562 * 8 7 5 35 35 H 0.97003 * 119.99674 * 244.95100 * 16 13 3 36 36 H 1.09004 * 109.47032 * 44.80469 * 17 16 13 37 37 H 1.09001 * 109.46930 * 284.80961 * 17 16 13 38 38 H 1.09004 * 109.47406 * 59.99924 * 18 17 16 39 39 H 1.09001 * 109.47361 * 299.99923 * 18 17 16 40 40 H 1.08000 * 119.61101 * 180.26848 * 21 20 19 41 41 H 1.08994 * 109.47410 * 269.97975 * 23 22 21 42 42 H 1.08998 * 109.46942 * 29.97764 * 23 22 21 43 43 H 1.09000 * 109.47163 * 149.97270 * 23 22 21 44 44 H 1.08009 * 120.78939 * 180.02562 * 24 22 21 45 45 H 1.09000 * 109.47749 * 89.99850 * 26 25 19 46 46 H 1.09010 * 109.46880 * 209.99712 * 26 25 19 47 47 H 1.08997 * 109.47381 * 329.98928 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1738 2.1033 -1.2651 5 6 3.4556 1.6765 -1.9329 6 1 4.0567 0.8923 -1.4966 7 6 3.8610 2.2869 -3.1008 8 7 3.1293 3.2419 -3.6318 9 14 5.4495 1.7573 -3.9289 10 1 5.3654 0.3184 -4.2865 11 1 5.6580 2.5614 -5.1597 12 1 6.5874 1.9704 -2.9989 13 16 2.3945 2.1264 1.4302 14 8 1.5513 1.5489 2.4175 15 8 2.4314 3.5207 1.1587 16 7 3.9421 1.6849 1.8208 17 6 5.0592 2.0990 0.9682 18 6 6.3760 1.9033 1.7222 19 6 7.5251 2.3298 0.8455 20 7 8.1048 1.4469 0.0554 21 6 9.1093 1.7761 -0.7328 22 6 9.6012 3.0677 -0.7493 23 6 10.7534 3.4339 -1.6490 24 6 9.0210 4.0220 0.0719 25 6 7.9629 3.6399 0.8826 26 6 7.2993 4.6405 1.7933 27 1 -0.3633 0.4330 -0.9321 28 1 -0.3632 -1.0236 0.0910 29 1 -0.3633 0.5907 0.8409 30 1 1.8934 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3311 1.8772 -1.9184 33 1 2.2052 3.1752 -1.0702 34 1 3.4143 3.6712 -4.4538 35 1 4.1089 1.1522 2.6141 36 1 4.9445 3.1503 0.7040 37 1 5.0669 1.4951 0.0608 38 1 6.4908 0.8520 1.9863 39 1 6.3683 2.5071 2.6296 40 1 9.5559 1.0265 -1.3693 41 1 11.6925 3.2802 -1.1176 42 1 10.7329 2.8057 -2.5395 43 1 10.6680 4.4806 -1.9408 44 1 9.3842 5.0392 0.0797 45 1 7.8006 4.6395 2.7611 46 1 7.3657 5.6345 1.3507 47 1 6.2515 4.3715 1.9265 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594474589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:26 Heat of formation + Delta-G solvation = -85.345467 kcal Electronic energy + Delta-G solvation = -29078.643034 eV Core-core repulsion = 25193.473784 eV Total energy + Delta-G solvation = -3885.169250 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.43119 -38.32467 -37.70344 -37.18511 -36.87668 -34.77036 -34.67805 -34.53295 -31.51216 -31.07652 -28.50381 -28.32507 -27.27176 -24.94194 -24.53168 -23.34901 -23.15739 -21.65512 -20.36767 -18.74893 -18.59804 -18.25644 -17.95646 -17.40765 -16.98788 -16.69465 -16.17593 -15.71528 -15.34366 -15.30282 -15.18738 -14.81149 -14.61790 -14.15584 -14.03585 -13.95376 -13.78335 -13.67381 -13.58389 -13.40715 -13.35886 -13.24585 -13.17690 -13.07589 -13.00902 -12.77134 -12.71336 -12.57491 -12.46809 -12.25104 -12.11088 -12.06051 -11.75991 -11.57213 -10.58963 -10.48075 -10.43405 -10.33754 -9.78607 -9.54329 -8.17723 -6.29197 -0.29166 0.13355 0.35269 1.37755 1.39843 1.46998 1.99035 2.39687 2.61033 2.76254 3.14555 3.37690 3.48671 3.73749 3.85058 3.93607 3.97834 4.05972 4.08771 4.24695 4.33031 4.41782 4.47513 4.51747 4.56348 4.64097 4.73614 4.76891 4.81005 4.81164 4.90454 5.00427 5.00851 5.12039 5.15823 5.18214 5.27656 5.30204 5.33386 5.34530 5.42836 5.53937 5.77881 5.83306 5.91611 6.11636 6.24566 6.82190 7.06218 7.40025 8.90121 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010774 B = 0.004804 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.225479 B = 5826.964640 C = 7425.249400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.122 3.878 3 N -0.997 5.997 4 C 0.260 3.740 5 C -0.532 4.532 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.925 5.925 9 Si 0.947 3.053 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.272 1.272 13 S 2.799 3.201 14 O -1.002 7.002 15 O -1.016 7.016 16 N -1.112 6.112 17 C 0.133 3.867 18 C -0.067 4.067 19 C 0.102 3.898 20 N -0.499 5.499 21 C 0.070 3.930 22 C -0.142 4.142 23 C -0.105 4.105 24 C -0.088 4.088 25 C -0.133 4.133 26 C -0.116 4.116 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.018 0.982 33 H 0.023 0.977 34 H 0.264 0.736 35 H 0.425 0.575 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.165 0.835 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.159 0.841 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.577 -2.216 9.539 15.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.838 5.838 4 C 0.136 3.864 5 C -0.571 4.571 6 H 0.088 0.912 7 C -0.181 4.181 8 N -0.565 5.565 9 Si 0.772 3.228 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.197 1.197 13 S 2.807 3.193 14 O -0.986 6.986 15 O -0.999 6.999 16 N -0.874 5.874 17 C 0.006 3.994 18 C -0.106 4.106 19 C -0.037 4.037 20 N -0.207 5.207 21 C -0.087 4.087 22 C -0.144 4.144 23 C -0.162 4.162 24 C -0.114 4.114 25 C -0.135 4.135 26 C -0.173 4.173 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.036 0.964 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.261 0.739 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.115 0.885 39 H 0.127 0.873 40 H 0.182 0.818 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.177 0.823 45 H 0.115 0.885 46 H 0.098 0.902 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.635 -2.275 9.724 15.333 hybrid contribution 1.069 0.294 -0.943 1.455 sum 12.703 -1.982 8.780 15.569 Atomic orbital electron populations 1.22191 0.95829 1.03165 1.01408 1.21238 0.94663 0.81237 1.03227 1.57623 1.79433 1.24183 1.22513 1.18722 0.96183 0.91238 0.80230 1.21727 1.07311 1.19940 1.08123 0.91240 1.25640 0.99760 0.94875 0.97859 1.70045 1.39874 1.25623 1.20920 0.85771 0.80642 0.78500 0.77847 1.19375 1.21259 1.19733 1.01158 0.73073 0.72868 0.72179 1.93539 1.65710 1.79571 1.59808 1.93528 1.87253 1.33571 1.85576 1.55558 1.23535 1.70695 1.37657 1.21112 0.85230 0.99825 0.93209 1.20686 0.88582 1.04282 0.97096 1.21118 0.96549 0.90154 0.95833 1.67404 1.09130 1.38314 1.05891 1.22969 0.93066 0.95991 0.96721 1.21290 0.99795 0.94384 0.98922 1.20766 0.94736 1.02932 0.97807 1.21739 0.94600 1.00811 0.94220 1.21053 0.97388 0.95606 0.99463 1.20900 1.00478 0.97119 0.98813 0.93362 0.89130 0.93355 0.90297 0.89614 0.96434 0.95903 0.92691 0.73921 0.92528 0.91884 0.88546 0.87273 0.81773 0.89099 0.90825 0.90376 0.82311 0.88492 0.90241 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.17 10.24 71.98 0.74 -4.44 16 2 C 0.12 4.14 6.01 86.38 0.52 4.66 16 3 N -1.00 -41.25 2.84 -519.87 -1.48 -42.73 16 4 C 0.26 13.24 5.47 85.63 0.47 13.70 16 5 C -0.53 -27.97 8.48 25.60 0.22 -27.75 16 6 H 0.07 3.52 6.51 -2.91 -0.02 3.50 16 7 C 0.02 1.01 5.46 84.66 0.46 1.47 16 8 N -0.92 -54.15 13.29 21.44 0.28 -53.86 16 9 Si 0.95 43.66 29.54 68.60 2.03 45.69 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 13 S 2.80 110.03 6.07 -56.49 -0.34 109.69 16 14 O -1.00 -39.33 17.09 -128.00 -2.19 -41.52 16 15 O -1.02 -48.13 16.01 -128.00 -2.05 -50.18 16 16 N -1.11 -34.71 6.05 -187.49 -1.14 -35.84 16 17 C 0.13 4.57 6.05 86.38 0.52 5.10 16 18 C -0.07 -1.81 4.96 29.85 0.15 -1.66 16 19 C 0.10 3.10 6.03 42.54 0.26 3.36 16 20 N -0.50 -16.53 10.27 -183.89 -1.89 -18.42 16 21 C 0.07 1.99 10.86 84.68 0.92 2.91 16 22 C -0.14 -3.43 5.90 -19.78 -0.12 -3.55 16 23 C -0.11 -1.70 10.04 71.24 0.72 -0.99 16 24 C -0.09 -2.10 9.54 22.47 0.21 -1.89 16 25 C -0.13 -3.55 5.90 -19.78 -0.12 -3.67 16 26 C -0.12 -2.48 9.21 71.24 0.66 -1.83 16 27 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.05 1.57 7.88 -2.39 -0.02 1.55 16 30 H 0.08 2.71 8.07 -2.39 -0.02 2.70 16 31 H 0.09 2.46 7.80 -2.39 -0.02 2.44 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.02 1.32 6.77 -2.39 -0.02 1.30 16 34 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 35 H 0.42 10.01 8.66 -96.74 -0.84 9.17 16 36 H 0.06 2.20 7.02 -2.38 -0.02 2.19 16 37 H 0.06 2.53 5.93 -2.39 -0.01 2.51 16 38 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 39 H 0.11 2.32 6.69 -2.39 -0.02 2.31 16 40 H 0.17 3.91 8.06 -2.91 -0.02 3.89 16 41 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 1.14 8.09 -2.39 -0.02 1.12 16 43 H 0.08 1.11 8.10 -2.39 -0.02 1.09 16 44 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 45 H 0.10 1.55 8.14 -2.39 -0.02 1.54 16 46 H 0.08 1.53 8.10 -2.38 -0.02 1.51 16 47 H 0.07 1.60 5.87 -2.39 -0.01 1.59 16 Total: -1.00 -72.94 395.39 -1.03 -73.97 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.14 Total: 27.77 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: 5.60 Total: -14.56 kcal Atomic # 7 Polarization: -146.64 SS G_CDS: -4.22 Total: -150.85 kcal Atomic # 8 Polarization: -87.46 SS G_CDS: -4.24 Total: -91.70 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 110.03 SS G_CDS: -0.34 Total: 109.69 kcal Total: -72.94 -1.03 -73.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594474589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.378 kcal (2) G-P(sol) polarization free energy of solvation -72.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds