Wall clock time and date at job start Wed Apr 1 2020 00:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.46989 * 2 1 4 4 N 1.40090 * 126.03481 * 269.97449 * 3 2 1 5 5 C 1.30837 * 108.20714 * 180.02562 * 4 3 2 6 6 C 1.50703 * 125.89875 * 180.02562 * 5 4 3 7 7 C 1.39872 * 108.19813 * 359.77731 * 5 4 3 8 8 S 1.76204 * 126.03500 * 180.23218 * 7 5 4 9 9 O 1.42098 * 106.40237 * 23.69573 * 8 7 5 10 10 O 1.42098 * 106.40094 * 156.61545 * 8 7 5 11 11 N 1.65605 * 107.21898 * 270.15453 * 8 7 5 12 12 C 1.46920 * 120.62900 * 269.72400 * 11 8 7 13 13 C 1.53630 * 108.54356 * 126.36769 * 12 11 8 14 14 C 1.53036 * 109.23955 * 54.85725 * 13 12 11 15 15 C 1.53046 * 109.53616 * 298.51007 * 14 13 12 16 16 H 1.09001 * 109.52536 * 301.39977 * 15 14 13 17 17 C 1.50704 * 109.49719 * 181.32144 * 15 14 13 18 18 H 1.07994 * 119.99614 * 240.16339 * 17 15 14 19 19 C 1.37871 * 119.99889 * 60.15872 * 17 15 14 20 20 N 1.31515 * 120.00627 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 119.99797 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46895 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46949 * 119.99977 * 21 19 17 24 24 H 1.48498 * 109.47454 * 240.00142 * 21 19 17 25 25 C 1.46924 * 120.62738 * 89.99941 * 11 8 7 26 26 C 1.34947 * 126.04434 * 89.99517 * 3 2 1 27 27 C 1.50706 * 126.12086 * 359.94562 * 26 3 2 28 28 H 1.08997 * 109.47557 * 60.00688 * 1 2 3 29 29 H 1.09000 * 109.47049 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47342 * 300.00088 * 1 2 3 31 31 H 1.08996 * 109.46976 * 239.99667 * 2 1 3 32 32 H 1.09002 * 109.46713 * 119.99542 * 2 1 3 33 33 H 1.08997 * 109.46821 * 89.97506 * 6 5 4 34 34 H 1.08997 * 109.46792 * 209.97657 * 6 5 4 35 35 H 1.08999 * 109.46853 * 329.97693 * 6 5 4 36 36 H 1.09003 * 109.58628 * 246.19745 * 12 11 8 37 37 H 1.09004 * 109.59248 * 6.62582 * 12 11 8 38 38 H 1.08993 * 109.63069 * 294.86314 * 13 12 11 39 39 H 1.09005 * 109.42968 * 174.71969 * 13 12 11 40 40 H 1.09005 * 109.46106 * 178.49441 * 14 13 12 41 41 H 1.09004 * 109.45345 * 58.52288 * 14 13 12 42 42 H 0.96996 * 120.00430 * 179.97438 * 20 19 17 43 43 H 1.08994 * 109.58800 * 353.37525 * 25 11 8 44 44 H 1.09001 * 109.57909 * 113.80149 * 25 11 8 45 45 H 1.08999 * 109.46995 * 90.02290 * 27 26 3 46 46 H 1.08994 * 109.46790 * 210.01977 * 27 26 3 47 47 H 1.08997 * 109.47305 * 330.02417 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2935 2.1580 -1.1328 5 6 2.7090 3.3322 -0.7323 6 6 3.1140 4.4777 -1.6239 7 6 2.7069 3.3426 0.6664 8 16 3.1769 4.6948 1.6937 9 8 3.0116 5.8695 0.9114 10 8 2.5283 4.4947 2.9421 11 7 4.8012 4.5498 1.9822 12 6 5.2908 3.7940 3.1430 13 6 6.2955 2.7407 2.6519 14 6 7.3955 3.4317 1.8429 15 6 6.7789 4.1156 0.6204 16 1 6.2631 3.3744 0.0099 17 6 7.8669 4.7682 -0.1929 18 1 7.8487 5.8347 -0.3619 19 6 8.8854 4.0038 -0.7212 20 7 8.9073 2.7049 -0.5158 21 14 10.2335 4.8127 -1.7300 22 1 9.9801 6.2736 -1.8139 23 1 11.5478 4.5752 -1.0807 24 1 10.2447 4.2325 -3.0970 25 6 5.7798 5.1797 1.0854 26 6 2.2829 2.1299 1.0911 27 6 2.1278 1.6951 2.5258 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.2427 5.0963 -1.8389 34 1 3.8715 5.0790 -1.1213 35 1 3.5206 4.0861 -2.5563 36 1 5.7809 4.4730 3.8409 37 1 4.4539 3.3003 3.6371 38 1 5.7842 2.0122 2.0227 39 1 6.7383 2.2343 3.5096 40 1 8.1250 2.6910 1.5151 41 1 7.8899 4.1775 2.4654 42 1 9.6237 2.1671 -0.8878 43 1 5.2658 5.6006 0.2213 44 1 6.3089 5.9693 1.6189 45 1 3.0592 1.2474 2.8724 46 1 1.8886 2.5605 3.1438 47 1 1.3236 0.9630 2.5987 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594804707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:04 Heat of formation + Delta-G solvation = -34.713943 kcal Electronic energy + Delta-G solvation = -30051.714784 eV Core-core repulsion = 26168.741081 eV Total energy + Delta-G solvation = -3882.973703 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.49324 -39.23559 -38.34718 -36.84947 -36.01489 -35.15525 -33.54729 -32.64549 -31.92810 -31.78314 -28.75843 -28.13944 -26.99123 -25.11248 -24.37445 -23.29372 -22.27424 -20.99492 -20.63512 -19.67652 -18.91277 -18.16083 -17.97711 -17.05897 -16.83834 -16.50577 -16.43407 -15.41498 -15.31926 -15.14286 -15.01345 -14.83112 -14.53540 -14.34467 -14.27591 -14.19865 -13.94947 -13.74425 -13.64368 -13.24807 -13.20075 -13.12499 -12.90808 -12.88071 -12.83197 -12.69379 -12.64472 -12.47559 -12.34659 -12.11283 -11.82620 -11.75919 -11.65286 -11.49215 -11.05206 -10.71341 -10.38534 -10.22884 -10.16342 -9.67774 -8.04680 -6.18067 -0.44325 0.52148 1.15864 1.39757 1.41955 1.45426 1.55756 2.17042 2.47277 2.85945 3.15923 3.23062 3.39626 3.55945 3.82968 3.90196 3.98244 4.04672 4.18226 4.27250 4.30690 4.41082 4.54426 4.59945 4.62418 4.65959 4.67210 4.68324 4.72502 4.85150 4.91424 4.93078 4.96994 5.07030 5.10366 5.15333 5.15723 5.34926 5.42624 5.43449 5.61186 5.69948 5.79275 5.91736 6.04411 6.21743 6.43415 6.43865 6.94198 7.49907 8.98996 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012550 B = 0.004458 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.586236 B = 6280.009927 C = 6822.665321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.106 3.894 3 N -0.358 5.358 4 N -0.326 5.326 5 C 0.150 3.850 6 C -0.092 4.092 7 C -0.839 4.839 8 S 2.734 3.266 9 O -0.985 6.985 10 O -0.973 6.973 11 N -0.994 5.994 12 C 0.121 3.879 13 C -0.124 4.124 14 C -0.105 4.105 15 C 0.042 3.958 16 H -0.007 1.007 17 C -0.530 4.530 18 H 0.057 0.943 19 C 0.018 3.982 20 N -0.915 5.915 21 Si 0.947 3.053 22 H -0.265 1.265 23 H -0.281 1.281 24 H -0.286 1.286 25 C 0.136 3.864 26 C 0.213 3.787 27 C -0.138 4.138 28 H 0.045 0.955 29 H 0.110 0.890 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.043 0.957 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.035 0.965 42 H 0.258 0.742 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.113 0.887 46 H 0.117 0.883 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.015 -6.433 7.474 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.013 4.013 3 N -0.137 5.137 4 N -0.147 5.147 5 C -0.019 4.019 6 C -0.150 4.150 7 C -0.939 4.939 8 S 2.824 3.176 9 O -0.975 6.975 10 O -0.963 6.963 11 N -0.832 5.832 12 C -0.003 4.003 13 C -0.163 4.163 14 C -0.143 4.143 15 C 0.022 3.978 16 H 0.011 0.989 17 C -0.569 4.569 18 H 0.076 0.924 19 C -0.181 4.181 20 N -0.555 5.555 21 Si 0.774 3.226 22 H -0.189 1.189 23 H -0.207 1.207 24 H -0.212 1.212 25 C 0.011 3.989 26 C 0.077 3.923 27 C -0.196 4.196 28 H 0.065 0.935 29 H 0.128 0.872 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.146 0.854 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.062 0.938 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.131 0.869 46 H 0.136 0.864 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.806 -6.869 6.695 18.489 hybrid contribution 1.408 0.075 -0.996 1.726 sum -14.398 -6.794 5.699 16.910 Atomic orbital electron populations 1.22170 0.92468 1.04927 1.02543 1.22290 0.96686 0.75762 1.06554 1.49431 1.48488 1.13029 1.02705 1.77252 1.24584 1.04114 1.08720 1.22058 0.93661 0.94280 0.91908 1.20545 1.03153 0.92988 0.98302 1.31281 1.34551 1.19677 1.08345 1.00367 0.71748 0.72917 0.72540 1.93492 1.85573 1.46258 1.72202 1.93429 1.73998 1.86899 1.41968 1.57622 1.23059 1.66326 1.36226 1.21717 0.98647 0.93859 0.86116 1.21954 0.97114 0.97466 0.99743 1.21386 0.97712 0.99379 0.95830 1.18862 0.92614 0.93031 0.93297 0.98863 1.21554 1.08844 0.94438 1.32060 0.92429 1.25618 0.99972 0.95248 0.97227 1.70026 1.33600 1.05756 1.46094 0.85668 0.79425 0.79161 0.78375 1.18939 1.20736 1.21242 1.21525 0.90002 0.95584 0.91756 1.21444 0.89498 0.88459 0.92903 1.21409 1.06266 1.06240 0.85689 0.93534 0.87195 0.91520 0.88284 0.85380 0.88111 0.90184 0.89925 0.89857 0.87742 0.93771 0.89916 0.92368 0.94593 0.93304 0.91038 0.91370 0.86919 0.86446 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 10.24 71.98 0.74 -1.39 16 2 C 0.11 1.80 6.78 86.38 0.59 2.39 16 3 N -0.36 -9.95 3.61 -334.70 -1.21 -11.16 16 4 N -0.33 -11.49 12.58 -47.38 -0.60 -12.08 16 5 C 0.15 5.46 7.21 43.10 0.31 5.77 16 6 C -0.09 -3.12 9.53 71.24 0.68 -2.44 16 7 C -0.84 -28.38 6.17 21.99 0.14 -28.24 16 8 S 2.73 93.35 5.66 -56.49 -0.32 93.03 16 9 O -0.98 -38.23 14.65 -128.00 -1.87 -40.10 16 10 O -0.97 -31.58 13.95 -128.00 -1.79 -33.37 16 11 N -0.99 -34.62 3.28 -512.30 -1.68 -36.30 16 12 C 0.12 3.57 6.41 86.51 0.55 4.12 16 13 C -0.12 -4.17 6.10 30.82 0.19 -3.99 16 14 C -0.10 -4.64 4.96 30.62 0.15 -4.49 16 15 C 0.04 2.02 2.25 -11.46 -0.03 1.99 16 16 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 17 C -0.53 -28.31 8.56 25.60 0.22 -28.09 16 18 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 19 C 0.02 0.98 5.30 84.65 0.45 1.43 16 20 N -0.91 -51.87 11.32 21.45 0.24 -51.63 16 21 Si 0.95 43.11 29.54 68.60 2.03 45.14 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 24 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 25 C 0.14 5.56 5.60 86.36 0.48 6.04 16 26 C 0.21 5.93 6.92 41.41 0.29 6.21 16 27 C -0.14 -2.54 9.58 71.24 0.68 -1.86 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.13 1.34 7.66 -2.39 -0.02 1.33 16 33 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 34 H 0.08 2.92 5.43 -2.39 -0.01 2.91 16 35 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.10 2.46 7.12 -2.38 -0.02 2.45 16 38 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 39 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 40 H 0.06 2.99 6.05 -2.38 -0.01 2.97 16 41 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 43 H 0.07 2.95 5.65 -2.39 -0.01 2.94 16 44 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.12 2.42 5.53 -2.39 -0.01 2.41 16 47 H 0.11 1.27 7.72 -2.39 -0.02 1.25 16 Total: -1.00 -71.71 378.58 1.21 -70.50 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.97 Total: 18.54 kcal Atomic # 6 Polarization: -48.00 SS G_CDS: 5.44 Total: -42.56 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -3.24 Total: -111.17 kcal Atomic # 8 Polarization: -69.81 SS G_CDS: -3.66 Total: -73.47 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 93.35 SS G_CDS: -0.32 Total: 93.03 kcal Total: -71.71 1.21 -70.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594804707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.786 kcal (2) G-P(sol) polarization free energy of solvation -71.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds