Wall clock time and date at job start Wed Apr 1 2020 00:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47567 * 2 1 4 4 N 1.40085 * 126.03983 * 90.01838 * 3 2 1 5 5 C 1.30834 * 108.20502 * 180.02562 * 4 3 2 6 6 C 1.50703 * 125.89652 * 179.97438 * 5 4 3 7 7 C 1.39869 * 108.20295 * 0.24404 * 5 4 3 8 8 S 1.76205 * 126.03703 * 179.71897 * 7 5 4 9 9 O 1.42098 * 106.39838 * 203.56583 * 8 7 5 10 10 O 1.42095 * 106.40357 * 336.48084 * 8 7 5 11 11 N 1.65600 * 107.21709 * 90.02871 * 8 7 5 12 12 C 1.46923 * 120.63399 * 89.99909 * 11 8 7 13 13 C 1.53190 * 108.77396 * 233.58686 * 12 11 8 14 14 C 1.53051 * 109.31135 * 305.36173 * 13 12 11 15 15 C 1.53042 * 109.53438 * 61.36685 * 14 13 12 16 16 H 1.09004 * 109.49565 * 58.58961 * 15 14 13 17 17 C 1.50700 * 109.49354 * 178.68047 * 15 14 13 18 18 H 1.08003 * 119.99415 * 119.99696 * 17 15 14 19 19 C 1.37875 * 120.00312 * 300.00378 * 17 15 14 20 20 N 1.31515 * 119.99731 * 180.02562 * 19 17 15 21 21 Si 1.86794 * 120.00084 * 359.97438 * 19 17 15 22 22 H 1.48502 * 109.47398 * 89.99804 * 21 19 17 23 23 H 1.48499 * 109.47498 * 210.00511 * 21 19 17 24 24 H 1.48505 * 109.47149 * 330.00416 * 21 19 17 25 25 C 1.46928 * 120.62573 * 269.71441 * 11 8 7 26 26 C 1.34949 * 126.03244 * 270.02795 * 3 2 1 27 27 C 1.50698 * 126.13332 * 359.97438 * 26 3 2 28 28 H 1.08998 * 109.47413 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47345 * 300.00156 * 1 2 3 30 30 H 1.09001 * 109.46870 * 60.00152 * 1 2 3 31 31 H 1.09005 * 109.47219 * 239.99388 * 2 1 3 32 32 H 1.09001 * 109.46870 * 119.99848 * 2 1 3 33 33 H 1.09002 * 109.47152 * 90.02599 * 6 5 4 34 34 H 1.09001 * 109.46980 * 330.02699 * 6 5 4 35 35 H 1.09004 * 109.47113 * 210.02680 * 6 5 4 36 36 H 1.09001 * 109.58618 * 353.36862 * 12 11 8 37 37 H 1.08999 * 109.58925 * 113.79775 * 12 11 8 38 38 H 1.08997 * 109.50187 * 65.31408 * 13 12 11 39 39 H 1.09002 * 109.49801 * 185.41221 * 13 12 11 40 40 H 1.08999 * 109.45636 * 181.38710 * 14 13 12 41 41 H 1.08993 * 109.45766 * 301.34716 * 14 13 12 42 42 H 0.97003 * 119.99350 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.58939 * 246.20360 * 25 11 8 44 44 H 1.08997 * 109.58746 * 6.63405 * 25 11 8 45 45 H 1.08996 * 109.47312 * 89.97269 * 27 26 3 46 46 H 1.08996 * 109.47322 * 209.98101 * 27 26 3 47 47 H 1.09008 * 109.46551 * 329.97959 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2935 2.1581 1.1327 5 6 2.7081 3.3325 0.7320 6 6 3.1128 4.4782 1.6235 7 6 2.7050 3.3431 -0.6666 8 16 3.1725 4.6962 -1.6940 9 8 2.5198 4.4976 -2.9405 10 8 3.0100 5.8701 -0.9101 11 7 4.7957 4.5507 -1.9878 12 6 5.2815 3.7907 -3.1476 13 6 6.2871 2.7414 -2.6634 14 6 7.3900 3.4315 -1.8573 15 6 6.7775 4.1148 -0.6326 16 1 6.2633 3.3731 -0.0213 17 6 7.8683 4.7665 0.1777 18 1 7.8497 5.8326 0.3496 19 6 8.8900 4.0018 0.6995 20 7 9.8416 4.5705 1.4071 21 14 8.9219 2.1578 0.4027 22 1 9.6768 1.8699 -0.8433 23 1 9.5826 1.4832 1.5489 24 1 7.5315 1.6542 0.2665 25 6 5.7773 5.1844 -1.0969 26 6 2.2826 2.1298 -1.0913 27 6 2.1285 1.6947 -2.5259 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 4.1795 4.4125 1.8380 34 1 2.5510 4.4287 2.5563 35 1 2.9006 5.4220 1.1212 36 1 4.4430 3.2949 -3.6367 37 1 5.7688 4.4672 -3.8497 38 1 5.7775 2.0127 -2.0330 39 1 6.7269 2.2353 -3.5227 40 1 8.1201 2.6902 -1.5324 41 1 7.8828 4.1774 -2.4808 42 1 10.5606 4.0325 1.7739 43 1 6.3042 5.9722 -1.6351 44 1 5.2662 5.6083 -0.2326 45 1 1.1223 1.9316 -2.8714 46 1 2.8577 2.2177 -3.1445 47 1 2.2942 0.6198 -2.5993 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594804708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:07 Heat of formation + Delta-G solvation = -5.604077 kcal Electronic energy + Delta-G solvation = -30193.709246 eV Core-core repulsion = 26311.997842 eV Total energy + Delta-G solvation = -3881.711404 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.44847 -38.00069 -37.05814 -35.54581 -35.12404 -33.28395 -32.65450 -31.54570 -30.92038 -30.53539 -27.76055 -27.19438 -25.15426 -24.06697 -23.60304 -21.59346 -21.18182 -19.61398 -19.57286 -18.42345 -17.64965 -16.94579 -16.66852 -16.10336 -15.57158 -15.41647 -14.83998 -14.63236 -14.14454 -14.01631 -13.69457 -13.48295 -13.40803 -13.36096 -13.16785 -13.01324 -12.80853 -12.67369 -12.53241 -12.47403 -12.12228 -12.03154 -11.88199 -11.73622 -11.63436 -11.35216 -11.27198 -11.19657 -11.12917 -10.64715 -10.40915 -10.25733 -10.16398 -9.85662 -9.46529 -9.16017 -9.07013 -9.00988 -8.58210 -8.36975 -6.10606 -4.10124 0.78174 1.53306 2.27284 2.37667 3.22200 3.34380 3.36021 3.40625 4.08501 4.18030 4.24796 4.37320 4.51176 4.57967 4.71821 4.82889 4.90407 5.04008 5.14349 5.20816 5.25028 5.27384 5.36814 5.38474 5.50963 5.61780 5.63846 5.73134 5.78919 5.94298 5.98901 6.03381 6.07015 6.15841 6.20347 6.39048 6.41712 6.51826 6.63758 6.73550 6.79766 6.84430 6.98914 7.12296 7.47885 7.55590 7.73836 8.46751 8.93807 9.51803 11.02361 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011880 B = 0.005041 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.285349 B = 5552.972404 C = 6169.990729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.120 3.880 3 N -0.361 5.361 4 N -0.299 5.299 5 C 0.173 3.827 6 C -0.112 4.112 7 C -0.814 4.814 8 S 2.720 3.280 9 O -0.973 6.973 10 O -0.958 6.958 11 N -0.996 5.996 12 C 0.128 3.872 13 C -0.139 4.139 14 C -0.119 4.119 15 C 0.005 3.995 16 H 0.029 0.971 17 C -0.514 4.514 18 H 0.078 0.922 19 C 0.074 3.926 20 N -0.898 5.898 21 Si 0.885 3.115 22 H -0.279 1.279 23 H -0.299 1.299 24 H -0.268 1.268 25 C 0.137 3.863 26 C 0.205 3.795 27 C -0.114 4.114 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.264 0.736 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.665 -8.947 -7.943 20.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.001 4.001 3 N -0.139 5.139 4 N -0.119 5.119 5 C 0.004 3.996 6 C -0.170 4.170 7 C -0.912 4.912 8 S 2.809 3.191 9 O -0.963 6.963 10 O -0.949 6.949 11 N -0.835 5.835 12 C 0.002 3.998 13 C -0.178 4.178 14 C -0.156 4.156 15 C -0.016 4.016 16 H 0.048 0.952 17 C -0.552 4.552 18 H 0.097 0.903 19 C -0.128 4.128 20 N -0.536 5.536 21 Si 0.716 3.284 22 H -0.206 1.206 23 H -0.227 1.227 24 H -0.193 1.193 25 C 0.013 3.987 26 C 0.071 3.929 27 C -0.172 4.172 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.116 0.884 46 H 0.119 0.881 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.390 -9.256 -7.089 20.936 hybrid contribution 0.589 -1.548 -0.248 1.675 sum -16.801 -10.804 -7.337 21.280 Atomic orbital electron populations 1.22185 0.93916 1.03238 1.03467 1.21787 0.95499 0.77929 1.04860 1.49065 1.49326 1.11959 1.03549 1.77386 1.24003 1.03860 1.06602 1.21909 0.92808 0.93821 0.91097 1.20841 1.03401 0.94433 0.98349 1.31353 1.32580 1.18463 1.08828 1.00935 0.72038 0.73274 0.72828 1.93501 1.73888 1.86964 1.41993 1.93492 1.85282 1.44734 1.71363 1.57736 1.23659 1.65822 1.36254 1.21364 0.97741 0.93822 0.86863 1.22009 0.98019 0.97802 0.99947 1.21921 0.96300 0.99107 0.98320 1.19548 0.94658 0.94382 0.92987 0.95247 1.20952 1.06345 0.96456 1.31479 0.90348 1.24954 0.95306 0.98015 0.94557 1.69892 1.12547 1.35911 1.35249 0.86882 0.78363 0.86595 0.76548 1.20645 1.22679 1.19285 1.21700 0.89525 0.95652 0.91808 1.20862 0.91397 0.89396 0.91246 1.20907 1.05725 1.02462 0.88109 0.90252 0.91416 0.91864 0.88655 0.88254 0.88591 0.90378 0.87059 0.90451 0.90905 0.92528 0.91935 0.93509 0.91802 0.92648 0.91113 0.89735 0.88364 0.88138 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 10.24 37.15 0.38 -0.84 16 2 C 0.12 1.07 6.96 -4.04 -0.03 1.04 16 3 N -0.36 -4.93 3.61 -57.14 -0.21 -5.13 16 4 N -0.30 -4.97 12.58 33.67 0.42 -4.55 16 5 C 0.17 2.94 7.21 -82.41 -0.59 2.34 16 6 C -0.11 -1.75 10.15 36.01 0.37 -1.38 16 7 C -0.81 -13.14 6.17 -40.01 -0.25 -13.38 16 8 S 2.72 44.83 5.64 -107.50 -0.61 44.23 16 9 O -0.97 -15.98 14.55 -57.18 -0.83 -16.81 16 10 O -0.96 -17.62 14.07 -57.18 -0.80 -18.42 16 11 N -1.00 -16.54 3.28 -113.28 -0.37 -16.91 16 12 C 0.13 1.83 6.37 -3.71 -0.02 1.81 16 13 C -0.14 -2.18 6.08 -26.61 -0.16 -2.35 16 14 C -0.12 -2.38 4.66 -26.68 -0.12 -2.51 16 15 C 0.00 0.10 1.85 -91.43 -0.17 -0.07 16 16 H 0.03 0.69 7.21 -51.93 -0.37 0.31 16 17 C -0.51 -13.68 9.15 -34.44 -0.31 -13.99 16 18 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 19 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 20 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 21 Si 0.89 21.61 24.39 -169.99 -4.15 17.46 16 22 H -0.28 -6.60 6.86 56.52 0.39 -6.21 16 23 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.27 -6.35 6.53 56.52 0.37 -5.98 16 25 C 0.14 2.61 5.63 -3.49 -0.02 2.59 16 26 C 0.21 2.84 6.92 -82.26 -0.57 2.27 16 27 C -0.11 -1.14 9.14 36.00 0.33 -0.81 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.60 7.05 -51.93 -0.37 0.23 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.11 1.75 5.65 -51.93 -0.29 1.46 16 36 H 0.08 0.93 5.57 -51.93 -0.29 0.64 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.05 1.02 3.25 -51.93 -0.17 0.85 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.08 1.61 7.12 -51.93 -0.37 1.24 16 45 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.10 1.05 5.25 -51.93 -0.27 0.78 16 47 H 0.08 0.55 7.08 -51.92 -0.37 0.19 16 LS Contribution 370.73 15.07 5.59 5.59 Total: -1.00 -33.94 370.73 -8.63 -42.57 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.18 Total: 1.32 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -1.27 Total: -23.32 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.62 Total: -52.61 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -1.64 Total: -35.24 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.15 Total: 17.46 kcal Atomic # 16 Polarization: 44.83 SS G_CDS: -0.61 Total: 44.23 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.94 -8.63 -42.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594804708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.965 kcal (2) G-P(sol) polarization free energy of solvation -33.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds