Wall clock time and date at job start Wed Apr 1 2020 00:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47567 * 2 1 4 4 N 1.40085 * 126.03983 * 90.01838 * 3 2 1 5 5 C 1.30834 * 108.20502 * 180.02562 * 4 3 2 6 6 C 1.50703 * 125.89652 * 179.97438 * 5 4 3 7 7 C 1.39869 * 108.20295 * 0.24404 * 5 4 3 8 8 S 1.76205 * 126.03703 * 179.71897 * 7 5 4 9 9 O 1.42098 * 106.39838 * 203.56583 * 8 7 5 10 10 O 1.42095 * 106.40357 * 336.48084 * 8 7 5 11 11 N 1.65600 * 107.21709 * 90.02871 * 8 7 5 12 12 C 1.46923 * 120.63399 * 89.99909 * 11 8 7 13 13 C 1.53190 * 108.77396 * 233.58686 * 12 11 8 14 14 C 1.53051 * 109.31135 * 305.36173 * 13 12 11 15 15 C 1.53042 * 109.53438 * 61.36685 * 14 13 12 16 16 H 1.09004 * 109.49565 * 58.58961 * 15 14 13 17 17 C 1.50700 * 109.49354 * 178.68047 * 15 14 13 18 18 H 1.08003 * 119.99415 * 119.99696 * 17 15 14 19 19 C 1.37875 * 120.00312 * 300.00378 * 17 15 14 20 20 N 1.31515 * 119.99731 * 180.02562 * 19 17 15 21 21 Si 1.86794 * 120.00084 * 359.97438 * 19 17 15 22 22 H 1.48502 * 109.47398 * 89.99804 * 21 19 17 23 23 H 1.48499 * 109.47498 * 210.00511 * 21 19 17 24 24 H 1.48505 * 109.47149 * 330.00416 * 21 19 17 25 25 C 1.46928 * 120.62573 * 269.71441 * 11 8 7 26 26 C 1.34949 * 126.03244 * 270.02795 * 3 2 1 27 27 C 1.50698 * 126.13332 * 359.97438 * 26 3 2 28 28 H 1.08998 * 109.47413 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47345 * 300.00156 * 1 2 3 30 30 H 1.09001 * 109.46870 * 60.00152 * 1 2 3 31 31 H 1.09005 * 109.47219 * 239.99388 * 2 1 3 32 32 H 1.09001 * 109.46870 * 119.99848 * 2 1 3 33 33 H 1.09002 * 109.47152 * 90.02599 * 6 5 4 34 34 H 1.09001 * 109.46980 * 330.02699 * 6 5 4 35 35 H 1.09004 * 109.47113 * 210.02680 * 6 5 4 36 36 H 1.09001 * 109.58618 * 353.36862 * 12 11 8 37 37 H 1.08999 * 109.58925 * 113.79775 * 12 11 8 38 38 H 1.08997 * 109.50187 * 65.31408 * 13 12 11 39 39 H 1.09002 * 109.49801 * 185.41221 * 13 12 11 40 40 H 1.08999 * 109.45636 * 181.38710 * 14 13 12 41 41 H 1.08993 * 109.45766 * 301.34716 * 14 13 12 42 42 H 0.97003 * 119.99350 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.58939 * 246.20360 * 25 11 8 44 44 H 1.08997 * 109.58746 * 6.63405 * 25 11 8 45 45 H 1.08996 * 109.47312 * 89.97269 * 27 26 3 46 46 H 1.08996 * 109.47322 * 209.98101 * 27 26 3 47 47 H 1.09008 * 109.46551 * 329.97959 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2935 2.1581 1.1327 5 6 2.7081 3.3325 0.7320 6 6 3.1128 4.4782 1.6235 7 6 2.7050 3.3431 -0.6666 8 16 3.1725 4.6962 -1.6940 9 8 2.5198 4.4976 -2.9405 10 8 3.0100 5.8701 -0.9101 11 7 4.7957 4.5507 -1.9878 12 6 5.2815 3.7907 -3.1476 13 6 6.2871 2.7414 -2.6634 14 6 7.3900 3.4315 -1.8573 15 6 6.7775 4.1148 -0.6326 16 1 6.2633 3.3731 -0.0213 17 6 7.8683 4.7665 0.1777 18 1 7.8497 5.8326 0.3496 19 6 8.8900 4.0018 0.6995 20 7 9.8416 4.5705 1.4071 21 14 8.9219 2.1578 0.4027 22 1 9.6768 1.8699 -0.8433 23 1 9.5826 1.4832 1.5489 24 1 7.5315 1.6542 0.2665 25 6 5.7773 5.1844 -1.0969 26 6 2.2826 2.1298 -1.0913 27 6 2.1285 1.6947 -2.5259 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 4.1795 4.4125 1.8380 34 1 2.5510 4.4287 2.5563 35 1 2.9006 5.4220 1.1212 36 1 4.4430 3.2949 -3.6367 37 1 5.7688 4.4672 -3.8497 38 1 5.7775 2.0127 -2.0330 39 1 6.7269 2.2353 -3.5227 40 1 8.1201 2.6902 -1.5324 41 1 7.8828 4.1774 -2.4808 42 1 10.5606 4.0325 1.7739 43 1 6.3042 5.9722 -1.6351 44 1 5.2662 5.6083 -0.2326 45 1 1.1223 1.9316 -2.8714 46 1 2.8577 2.2177 -3.1445 47 1 2.2942 0.6198 -2.5993 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594804708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:06 Heat of formation + Delta-G solvation = -29.683149 kcal Electronic energy + Delta-G solvation = -30194.753393 eV Core-core repulsion = 26311.997842 eV Total energy + Delta-G solvation = -3882.755551 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.51891 -39.45686 -38.36862 -36.86718 -36.02174 -35.15186 -33.58454 -33.15428 -32.14334 -31.89362 -28.77669 -28.15644 -27.00817 -25.48577 -24.40513 -23.11891 -22.30164 -21.11824 -20.63176 -19.75504 -19.02784 -18.53155 -18.09318 -17.13533 -16.84946 -16.65320 -16.48607 -15.50843 -15.40003 -15.34368 -15.04439 -14.89864 -14.58661 -14.47412 -14.32088 -14.26104 -14.12871 -13.98723 -13.68223 -13.30635 -13.23864 -13.21177 -13.15132 -12.98539 -12.84647 -12.70792 -12.62716 -12.40893 -12.31095 -12.15357 -12.02727 -11.82837 -11.58223 -11.46008 -11.14899 -10.90432 -10.65371 -10.25975 -10.18830 -9.77344 -8.27472 -6.30063 -0.48016 0.50384 1.13243 1.27167 1.34331 1.36729 1.43400 2.14309 2.32384 2.84442 3.08490 3.12508 3.37035 3.55025 3.80543 3.83319 3.97920 3.99712 4.08751 4.14453 4.24213 4.28679 4.44196 4.46184 4.56261 4.61147 4.65541 4.67444 4.69712 4.70336 4.77590 4.90469 4.92443 5.01595 5.03735 5.05678 5.12400 5.16450 5.23295 5.28959 5.41732 5.49384 5.61728 5.73422 5.83716 5.89388 6.33443 6.41827 6.77717 7.35041 8.89066 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011880 B = 0.005041 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.285349 B = 5552.972404 C = 6169.990729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.106 3.894 3 N -0.357 5.357 4 N -0.326 5.326 5 C 0.152 3.848 6 C -0.111 4.111 7 C -0.839 4.839 8 S 2.732 3.268 9 O -0.970 6.970 10 O -0.986 6.986 11 N -0.996 5.996 12 C 0.118 3.882 13 C -0.131 4.131 14 C -0.122 4.122 15 C 0.007 3.993 16 H 0.017 0.983 17 C -0.513 4.513 18 H 0.042 0.958 19 C 0.017 3.983 20 N -0.948 5.948 21 Si 0.946 3.054 22 H -0.262 1.262 23 H -0.306 1.306 24 H -0.256 1.256 25 C 0.146 3.854 26 C 0.212 3.788 27 C -0.120 4.120 28 H 0.109 0.891 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.131 0.869 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.098 0.902 40 H 0.032 0.968 41 H 0.064 0.936 42 H 0.264 0.736 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.114 0.886 46 H 0.099 0.901 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.465 -12.119 -10.897 24.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.013 4.013 3 N -0.135 5.135 4 N -0.147 5.147 5 C -0.017 4.017 6 C -0.170 4.170 7 C -0.939 4.939 8 S 2.823 3.177 9 O -0.960 6.960 10 O -0.976 6.976 11 N -0.835 5.835 12 C -0.006 4.006 13 C -0.170 4.170 14 C -0.159 4.159 15 C -0.014 4.014 16 H 0.035 0.965 17 C -0.552 4.552 18 H 0.061 0.939 19 C -0.180 4.180 20 N -0.588 5.588 21 Si 0.774 3.226 22 H -0.188 1.188 23 H -0.235 1.235 24 H -0.181 1.181 25 C 0.021 3.979 26 C 0.076 3.924 27 C -0.177 4.177 28 H 0.127 0.873 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.149 0.851 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.117 0.883 40 H 0.050 0.950 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.133 0.867 46 H 0.117 0.883 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.214 -12.432 -10.075 25.005 hybrid contribution 1.068 -0.549 0.696 1.388 sum -18.146 -12.981 -9.379 24.202 Atomic orbital electron populations 1.22160 0.92611 1.04878 1.02502 1.22304 0.96605 0.75718 1.06648 1.49434 1.48357 1.13078 1.02671 1.77281 1.24551 1.04139 1.08705 1.22042 0.93619 0.94196 0.91879 1.20794 1.02711 0.94359 0.99120 1.31263 1.34707 1.19590 1.08319 1.00425 0.71758 0.72939 0.72564 1.93494 1.73649 1.87009 1.41838 1.93457 1.85617 1.46557 1.71993 1.57682 1.23143 1.66143 1.36485 1.21694 0.98825 0.93857 0.86237 1.21970 0.96714 0.97821 1.00505 1.21836 0.97458 0.98917 0.97706 1.19445 0.93735 0.94719 0.93467 0.96473 1.21293 1.07368 0.95134 1.31403 0.93936 1.25740 0.95041 1.02662 0.94541 1.70043 1.13756 1.37736 1.37303 0.85890 0.78947 0.81038 0.76683 1.18761 1.23493 1.18062 1.21368 0.89497 0.94846 0.92224 1.21444 0.89496 0.88489 0.92946 1.21172 1.06622 1.04856 0.85054 0.87274 0.93663 0.91514 0.85116 0.88251 0.89981 0.88957 0.87649 0.87310 0.89334 0.92608 0.88350 0.95019 0.91707 0.92718 0.91072 0.90663 0.86733 0.88264 0.86607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 10.24 71.98 0.74 -1.10 16 2 C 0.11 1.52 6.96 86.38 0.60 2.12 16 3 N -0.36 -8.92 3.61 -334.70 -1.21 -10.13 16 4 N -0.33 -10.69 12.58 -47.38 -0.60 -11.29 16 5 C 0.15 5.17 7.21 43.10 0.31 5.48 16 6 C -0.11 -3.65 10.15 71.24 0.72 -2.92 16 7 C -0.84 -26.09 6.17 21.99 0.14 -25.95 16 8 S 2.73 86.87 5.64 -56.49 -0.32 86.55 16 9 O -0.97 -29.30 14.55 -128.00 -1.86 -31.16 16 10 O -0.99 -36.69 14.07 -128.00 -1.80 -38.49 16 11 N -1.00 -31.55 3.28 -512.30 -1.68 -33.23 16 12 C 0.12 2.96 6.37 86.36 0.55 3.51 16 13 C -0.13 -3.62 6.08 30.67 0.19 -3.43 16 14 C -0.12 -4.64 4.66 30.63 0.14 -4.50 16 15 C 0.01 0.30 1.85 -11.32 -0.02 0.28 16 16 H 0.02 0.80 7.21 -2.39 -0.02 0.79 16 17 C -0.51 -28.31 9.15 25.60 0.23 -28.08 16 18 H 0.04 2.57 7.99 -2.91 -0.02 2.55 16 19 C 0.02 0.99 5.45 84.65 0.46 1.45 16 20 N -0.95 -58.69 13.96 21.45 0.30 -58.40 16 21 Si 0.95 44.85 24.39 68.60 1.67 46.52 16 22 H -0.26 -11.57 6.86 99.48 0.68 -10.89 16 23 H -0.31 -14.78 7.11 99.48 0.71 -14.07 16 24 H -0.26 -11.52 6.53 99.48 0.65 -10.87 16 25 C 0.15 5.61 5.63 86.51 0.49 6.10 16 26 C 0.21 5.27 6.92 41.41 0.29 5.55 16 27 C -0.12 -1.82 9.14 71.24 0.65 -1.17 16 28 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.13 0.95 7.05 -2.38 -0.02 0.94 16 32 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.11 3.52 5.65 -2.38 -0.01 3.51 16 36 H 0.11 2.09 5.57 -2.39 -0.01 2.08 16 37 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.03 1.30 3.25 -2.39 -0.01 1.29 16 41 H 0.06 2.42 8.14 -2.39 -0.02 2.41 16 42 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.07 3.00 7.12 -2.39 -0.02 2.98 16 45 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.10 1.58 5.25 -2.39 -0.01 1.57 16 47 H 0.12 0.90 7.08 -2.38 -0.02 0.89 16 Total: -1.00 -76.91 370.73 0.89 -76.02 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.90 Total: 16.26 kcal Atomic # 6 Polarization: -48.15 SS G_CDS: 5.49 Total: -42.66 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -3.19 Total: -113.04 kcal Atomic # 8 Polarization: -65.99 SS G_CDS: -3.66 Total: -69.65 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.67 Total: 46.52 kcal Atomic # 16 Polarization: 86.87 SS G_CDS: -0.32 Total: 86.55 kcal Total: -76.91 0.89 -76.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594804708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.337 kcal (2) G-P(sol) polarization free energy of solvation -76.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds