Wall clock time and date at job start Wed Apr 1 2020 01:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46501 * 109.46930 * 2 1 4 4 C 1.46502 * 120.00012 * 274.99946 * 3 2 1 5 5 S 1.65603 * 119.99941 * 94.99684 * 3 2 1 6 6 O 1.42092 * 106.40460 * 336.46073 * 5 3 2 7 7 O 1.42100 * 106.40074 * 203.54037 * 5 3 2 8 8 C 1.76198 * 107.21550 * 90.00323 * 5 3 2 9 9 C 1.39876 * 126.03812 * 270.00114 * 8 5 3 10 10 C 1.50703 * 125.89794 * 359.97438 * 9 8 5 11 11 N 1.30838 * 108.20188 * 179.73943 * 9 8 5 12 12 N 1.40087 * 108.20467 * 0.40354 * 11 9 8 13 13 C 1.46499 * 126.03542 * 179.85349 * 12 11 9 14 14 C 1.52997 * 109.47376 * 276.02791 * 13 12 11 15 15 C 1.50693 * 115.55333 * 174.50119 * 14 13 12 16 16 H 1.08007 * 120.00295 * 219.86215 * 15 14 13 17 17 C 1.37872 * 119.99899 * 39.85908 * 15 14 13 18 18 N 1.31519 * 120.00287 * 8.34015 * 17 15 14 19 19 Si 1.86801 * 120.00144 * 188.33601 * 17 15 14 20 20 H 1.48503 * 109.47352 * 180.02562 * 19 17 15 21 21 H 1.48508 * 109.47240 * 300.00247 * 19 17 15 22 22 H 1.48506 * 109.47174 * 60.00070 * 19 17 15 23 23 C 1.53002 * 117.51540 * 320.20212 * 14 13 12 24 24 C 1.53000 * 60.00000 * 107.48058 * 23 14 13 25 25 C 1.34947 * 107.92633 * 359.58863 * 12 11 9 26 26 C 1.50696 * 126.12904 * 180.26244 * 25 12 11 27 27 H 1.08994 * 109.46774 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47226 * 300.00250 * 1 2 3 29 29 H 1.09003 * 109.46803 * 59.99930 * 1 2 3 30 30 H 1.08992 * 109.47106 * 240.00452 * 2 1 3 31 31 H 1.08994 * 109.46745 * 119.99482 * 2 1 3 32 32 H 1.08997 * 109.46859 * 269.99732 * 4 3 2 33 33 H 1.09009 * 109.47079 * 30.00212 * 4 3 2 34 34 H 1.09002 * 109.47030 * 149.99651 * 4 3 2 35 35 H 1.09007 * 109.46798 * 90.00269 * 10 9 8 36 36 H 1.09000 * 109.47172 * 210.00056 * 10 9 8 37 37 H 1.08997 * 109.47183 * 330.00947 * 10 9 8 38 38 H 1.09005 * 109.47093 * 156.02696 * 13 12 11 39 39 H 1.08996 * 109.47434 * 36.02858 * 13 12 11 40 40 H 0.97000 * 120.00258 * 174.99151 * 18 17 15 41 41 H 1.09002 * 117.50241 * 214.96473 * 23 14 13 42 42 H 1.08997 * 117.50181 * 359.97438 * 23 14 13 43 43 H 1.08998 * 117.50201 * 252.50603 * 24 23 14 44 44 H 1.08998 * 117.50071 * 107.48977 * 24 23 14 45 45 H 1.08997 * 109.46949 * 89.97389 * 26 25 12 46 46 H 1.08996 * 109.47048 * 209.97596 * 26 25 12 47 47 H 1.09008 * 109.47225 * 329.97832 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 16 2.4121 2.1203 1.4287 6 8 1.6869 1.4416 2.4448 7 8 2.3056 3.5187 1.1998 8 6 4.1169 1.7942 1.7320 9 6 4.6332 0.7020 2.4370 10 6 3.8264 -0.4020 3.0706 11 7 5.9377 0.8016 2.4469 12 7 6.2929 1.9670 1.7555 13 6 7.6560 2.4564 1.5346 14 6 8.1157 3.2545 2.7562 15 6 9.5505 3.7145 2.7299 16 1 10.1450 3.6810 3.6309 17 6 10.1042 4.1781 1.5554 18 7 9.3423 4.3742 0.5015 19 14 11.9368 4.5280 1.4611 20 1 12.2786 5.0135 0.0999 21 1 12.2947 5.5661 2.4608 22 1 12.6938 3.2829 1.7477 23 6 7.0918 4.1723 3.4272 24 6 7.5207 2.8739 4.1135 25 6 5.1581 2.5561 1.3240 26 6 5.0668 3.8335 0.5296 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.1582 1.9479 -1.6669 33 1 1.4169 1.7460 -1.9759 34 1 2.0038 3.1735 -1.0893 35 1 3.6838 -1.2073 2.3500 36 1 4.3563 -0.7846 3.9429 37 1 2.8555 -0.0126 3.3770 38 1 7.6732 3.0983 0.6537 39 1 8.3254 1.6101 1.3805 40 1 9.7173 4.7684 -0.3015 41 1 7.4559 5.1088 3.8496 42 1 6.0905 4.2080 2.9980 43 1 6.8016 2.0551 4.1360 44 1 8.1671 2.9562 4.9873 45 1 5.0973 3.6022 -0.5351 46 1 4.1313 4.3412 0.7645 47 1 5.9057 4.4810 0.7849 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596251995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:00 Heat of formation + Delta-G solvation = 24.183563 kcal Electronic energy + Delta-G solvation = -29667.852039 eV Core-core repulsion = 25787.432324 eV Total energy + Delta-G solvation = -3880.419715 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.07493 -37.17675 -36.82411 -36.72651 -35.60761 -33.18616 -32.37456 -31.60771 -30.82935 -28.89063 -26.97087 -26.20649 -26.07828 -24.76913 -22.75144 -21.42433 -20.79766 -19.79738 -18.70261 -18.65010 -17.57692 -16.81954 -16.54762 -16.06074 -15.37549 -15.23292 -14.68995 -14.46343 -14.18070 -14.00547 -13.67548 -13.63795 -13.28705 -13.02864 -12.75779 -12.65383 -12.58788 -12.35748 -12.23032 -12.20325 -12.00514 -11.89014 -11.82237 -11.61178 -11.44762 -11.36853 -11.12107 -11.01965 -10.93649 -10.87215 -10.61486 -10.37688 -10.04483 -9.90618 -9.29412 -9.14711 -8.96405 -8.68456 -8.47610 -8.27313 -6.35047 -4.36074 0.68636 2.06451 2.63741 3.02110 3.16222 3.21027 3.24421 3.29501 4.00935 4.17934 4.42283 4.67452 4.77586 4.85118 4.95167 5.07491 5.10121 5.28088 5.36305 5.40338 5.43244 5.51225 5.57222 5.68068 5.69689 5.73495 5.78941 5.86122 5.92669 6.02353 6.07197 6.10300 6.19451 6.26771 6.36086 6.41279 6.53546 6.56580 6.68318 6.77592 6.91307 7.00839 7.10597 7.27292 7.51225 7.65321 8.08332 8.15174 8.61548 9.25147 10.71120 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020823 B = 0.003480 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.345691 B = 8042.968026 C = 8492.813185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.121 3.879 3 N -1.005 6.005 4 C 0.084 3.916 5 S 2.727 3.273 6 O -0.963 6.963 7 O -0.966 6.966 8 C -0.838 4.838 9 C 0.141 3.859 10 C -0.101 4.101 11 N -0.292 5.292 12 N -0.326 5.326 13 C 0.149 3.851 14 C 0.039 3.961 15 C -0.484 4.484 16 H 0.067 0.933 17 C 0.068 3.932 18 N -0.892 5.892 19 Si 0.906 3.094 20 H -0.284 1.284 21 H -0.275 1.275 22 H -0.274 1.274 23 C -0.203 4.203 24 C -0.206 4.206 25 C 0.217 3.783 26 C -0.139 4.139 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.143 0.857 39 H 0.082 0.918 40 H 0.269 0.731 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.115 0.885 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.791 -6.973 -5.621 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.005 4.005 3 N -0.842 5.842 4 C -0.061 4.061 5 S 2.818 3.182 6 O -0.954 6.954 7 O -0.956 6.956 8 C -0.939 4.939 9 C -0.028 4.028 10 C -0.159 4.159 11 N -0.112 5.112 12 N -0.101 5.101 13 C 0.031 3.969 14 C 0.037 3.963 15 C -0.522 4.522 16 H 0.085 0.915 17 C -0.135 4.135 18 N -0.530 5.530 19 Si 0.733 3.267 20 H -0.210 1.210 21 H -0.200 1.200 22 H -0.199 1.199 23 C -0.241 4.241 24 C -0.243 4.243 25 C 0.079 3.921 26 C -0.197 4.197 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.160 0.840 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.104 0.896 46 H 0.134 0.866 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.981 -6.996 -4.984 16.409 hybrid contribution 1.141 0.309 -0.451 1.265 sum -12.840 -6.688 -5.435 15.464 Atomic orbital electron populations 1.22232 0.95974 1.02350 1.02694 1.21220 0.94445 0.81505 1.03280 1.57540 1.80245 1.23710 1.22722 1.21566 1.01829 0.97355 0.85380 1.00655 0.72949 0.72721 0.71884 1.93468 1.70829 1.75481 1.55578 1.93468 1.86812 1.30085 1.85272 1.30726 1.23319 1.11077 1.28755 1.21689 0.91487 0.94438 0.95205 1.20647 1.00158 0.94614 1.00526 1.77330 1.13416 1.03307 1.17186 1.49803 1.07830 1.15783 1.36712 1.22247 0.73988 0.98269 1.02430 1.19221 0.93577 0.95898 0.87557 1.20493 0.93269 1.42649 0.95757 0.91455 1.25019 0.98790 0.94416 0.95228 1.69610 1.35838 1.43274 1.04298 0.86417 0.84111 0.78854 0.77350 1.20977 1.20044 1.19926 1.23054 0.99287 0.94226 1.07503 1.23028 1.04485 0.98584 0.98222 1.20888 0.85551 0.93763 0.91886 1.21224 1.07357 0.92317 0.98808 0.91511 0.91719 0.92431 0.90622 0.89937 0.92770 0.90893 0.89820 0.90640 0.90478 0.87610 0.83990 0.90000 0.92103 0.90126 0.91694 0.90122 0.90641 0.89586 0.86635 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.24 37.16 0.38 -1.05 16 2 C 0.12 1.12 6.05 -4.04 -0.02 1.09 16 3 N -1.00 -11.35 3.18 -121.75 -0.39 -11.74 16 4 C 0.08 0.78 10.68 59.85 0.64 1.42 16 5 S 2.73 40.75 5.68 -107.50 -0.61 40.14 16 6 O -0.96 -15.39 14.34 -57.18 -0.82 -16.21 16 7 O -0.97 -16.05 13.86 -57.18 -0.79 -16.85 16 8 C -0.84 -14.51 6.17 -40.01 -0.25 -14.76 16 9 C 0.14 2.52 7.21 -82.40 -0.59 1.93 16 10 C -0.10 -1.40 10.15 36.01 0.37 -1.03 16 11 N -0.29 -5.98 10.93 33.67 0.37 -5.61 16 12 N -0.33 -6.76 2.54 -57.14 -0.14 -6.91 16 13 C 0.15 3.37 5.60 -4.04 -0.02 3.34 16 14 C 0.04 0.93 2.31 -155.66 -0.36 0.57 16 15 C -0.48 -12.52 9.02 -34.45 -0.31 -12.83 16 16 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 17 C 0.07 1.70 5.28 -17.82 -0.09 1.61 16 18 N -0.89 -22.32 10.89 55.43 0.60 -21.71 16 19 Si 0.91 19.73 29.55 -169.99 -5.02 14.71 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 C -0.20 -4.70 9.64 -26.73 -0.26 -4.96 16 24 C -0.21 -4.75 9.61 -26.73 -0.26 -5.01 16 25 C 0.22 4.06 5.66 -82.27 -0.47 3.59 16 26 C -0.14 -2.29 9.12 36.00 0.33 -1.96 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 31 H 0.08 0.77 7.61 -51.93 -0.40 0.37 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.50 8.07 -51.92 -0.42 0.08 16 34 H 0.08 0.80 7.02 -51.93 -0.36 0.44 16 35 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.11 1.45 5.66 -51.93 -0.29 1.16 16 38 H 0.14 3.27 5.27 -51.93 -0.27 3.00 16 39 H 0.08 1.91 8.14 -51.93 -0.42 1.48 16 40 H 0.27 6.43 8.32 -40.82 -0.34 6.09 16 41 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 42 H 0.06 1.46 5.75 -51.93 -0.30 1.16 16 43 H 0.08 1.87 6.04 -51.93 -0.31 1.55 16 44 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 45 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.12 1.83 5.55 -51.93 -0.29 1.54 16 47 H 0.10 1.80 7.15 -51.92 -0.37 1.42 16 LS Contribution 382.80 15.07 5.77 5.77 Total: -1.00 -29.67 382.80 -9.17 -38.84 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.21 Total: 7.62 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: -0.92 Total: -28.04 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.44 Total: -45.98 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -1.61 Total: -33.06 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: 40.75 SS G_CDS: -0.61 Total: 40.14 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.67 -9.17 -38.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596251995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.028 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds