Wall clock time and date at job start Wed Apr 1 2020 01:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46501 * 109.46930 * 2 1 4 4 C 1.46502 * 120.00012 * 274.99946 * 3 2 1 5 5 S 1.65603 * 119.99941 * 94.99684 * 3 2 1 6 6 O 1.42092 * 106.40460 * 336.46073 * 5 3 2 7 7 O 1.42100 * 106.40074 * 203.54037 * 5 3 2 8 8 C 1.76198 * 107.21550 * 90.00323 * 5 3 2 9 9 C 1.39876 * 126.03812 * 270.00114 * 8 5 3 10 10 C 1.50703 * 125.89794 * 359.97438 * 9 8 5 11 11 N 1.30838 * 108.20188 * 179.73943 * 9 8 5 12 12 N 1.40087 * 108.20467 * 0.40354 * 11 9 8 13 13 C 1.46499 * 126.03542 * 179.85349 * 12 11 9 14 14 C 1.52997 * 109.47376 * 276.02791 * 13 12 11 15 15 C 1.50693 * 115.55333 * 174.50119 * 14 13 12 16 16 H 1.08007 * 120.00295 * 219.86215 * 15 14 13 17 17 C 1.37872 * 119.99899 * 39.85908 * 15 14 13 18 18 N 1.31519 * 120.00287 * 8.34015 * 17 15 14 19 19 Si 1.86801 * 120.00144 * 188.33601 * 17 15 14 20 20 H 1.48503 * 109.47352 * 180.02562 * 19 17 15 21 21 H 1.48508 * 109.47240 * 300.00247 * 19 17 15 22 22 H 1.48506 * 109.47174 * 60.00070 * 19 17 15 23 23 C 1.53002 * 117.51540 * 320.20212 * 14 13 12 24 24 C 1.53000 * 60.00000 * 107.48058 * 23 14 13 25 25 C 1.34947 * 107.92633 * 359.58863 * 12 11 9 26 26 C 1.50696 * 126.12904 * 180.26244 * 25 12 11 27 27 H 1.08994 * 109.46774 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47226 * 300.00250 * 1 2 3 29 29 H 1.09003 * 109.46803 * 59.99930 * 1 2 3 30 30 H 1.08992 * 109.47106 * 240.00452 * 2 1 3 31 31 H 1.08994 * 109.46745 * 119.99482 * 2 1 3 32 32 H 1.08997 * 109.46859 * 269.99732 * 4 3 2 33 33 H 1.09009 * 109.47079 * 30.00212 * 4 3 2 34 34 H 1.09002 * 109.47030 * 149.99651 * 4 3 2 35 35 H 1.09007 * 109.46798 * 90.00269 * 10 9 8 36 36 H 1.09000 * 109.47172 * 210.00056 * 10 9 8 37 37 H 1.08997 * 109.47183 * 330.00947 * 10 9 8 38 38 H 1.09005 * 109.47093 * 156.02696 * 13 12 11 39 39 H 1.08996 * 109.47434 * 36.02858 * 13 12 11 40 40 H 0.97000 * 120.00258 * 174.99151 * 18 17 15 41 41 H 1.09002 * 117.50241 * 214.96473 * 23 14 13 42 42 H 1.08997 * 117.50181 * 359.97438 * 23 14 13 43 43 H 1.08998 * 117.50201 * 252.50603 * 24 23 14 44 44 H 1.08998 * 117.50071 * 107.48977 * 24 23 14 45 45 H 1.08997 * 109.46949 * 89.97389 * 26 25 12 46 46 H 1.08996 * 109.47048 * 209.97596 * 26 25 12 47 47 H 1.09008 * 109.47225 * 329.97832 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 16 2.4121 2.1203 1.4287 6 8 1.6869 1.4416 2.4448 7 8 2.3056 3.5187 1.1998 8 6 4.1169 1.7942 1.7320 9 6 4.6332 0.7020 2.4370 10 6 3.8264 -0.4020 3.0706 11 7 5.9377 0.8016 2.4469 12 7 6.2929 1.9670 1.7555 13 6 7.6560 2.4564 1.5346 14 6 8.1157 3.2545 2.7562 15 6 9.5505 3.7145 2.7299 16 1 10.1450 3.6810 3.6309 17 6 10.1042 4.1781 1.5554 18 7 9.3423 4.3742 0.5015 19 14 11.9368 4.5280 1.4611 20 1 12.2786 5.0135 0.0999 21 1 12.2947 5.5661 2.4608 22 1 12.6938 3.2829 1.7477 23 6 7.0918 4.1723 3.4272 24 6 7.5207 2.8739 4.1135 25 6 5.1581 2.5561 1.3240 26 6 5.0668 3.8335 0.5296 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.1582 1.9479 -1.6669 33 1 1.4169 1.7460 -1.9759 34 1 2.0038 3.1735 -1.0893 35 1 3.6838 -1.2073 2.3500 36 1 4.3563 -0.7846 3.9429 37 1 2.8555 -0.0126 3.3770 38 1 7.6732 3.0983 0.6537 39 1 8.3254 1.6101 1.3805 40 1 9.7173 4.7684 -0.3015 41 1 7.4559 5.1088 3.8496 42 1 6.0905 4.2080 2.9980 43 1 6.8016 2.0551 4.1360 44 1 8.1671 2.9562 4.9873 45 1 5.0973 3.6022 -0.5351 46 1 4.1313 4.3412 0.7645 47 1 5.9057 4.4810 0.7849 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596251995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:59 Heat of formation + Delta-G solvation = 7.129859 kcal Electronic energy + Delta-G solvation = -29668.591543 eV Core-core repulsion = 25787.432324 eV Total energy + Delta-G solvation = -3881.159219 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.53692 -38.66621 -38.35365 -37.54878 -36.83656 -34.65570 -34.27099 -33.04800 -31.53172 -30.28799 -28.35819 -27.91698 -26.97111 -26.38333 -23.50903 -23.22921 -22.30467 -21.38482 -20.30075 -19.76451 -18.64102 -18.57177 -17.97209 -17.04577 -16.97371 -16.84912 -16.27948 -15.60286 -15.34263 -15.03594 -15.01088 -14.77831 -14.61942 -14.46840 -14.20509 -13.91306 -13.65513 -13.61685 -13.53444 -13.30744 -13.15573 -13.14167 -13.06916 -12.88678 -12.86496 -12.81555 -12.55409 -12.43863 -12.31060 -12.22462 -12.18515 -11.75527 -11.65159 -11.43760 -11.16862 -10.83110 -10.20453 -10.13596 -10.06377 -9.90266 -8.25627 -6.34294 -0.46688 0.63814 1.28190 1.40319 1.44272 1.51359 1.54660 2.21919 2.35938 2.82322 2.86598 3.18899 3.43749 3.51273 3.71080 3.90651 4.01375 4.07504 4.23023 4.32373 4.39450 4.40116 4.42456 4.53695 4.65088 4.66708 4.68610 4.76681 4.77203 4.79593 4.83640 4.87923 4.97620 5.02308 5.03649 5.05843 5.09458 5.21122 5.32211 5.32733 5.38172 5.45811 5.61960 5.70834 5.74725 5.92250 6.25074 6.63206 6.65001 7.29154 8.79315 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020823 B = 0.003480 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.345691 B = 8042.968026 C = 8492.813185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.110 3.890 3 N -0.997 5.997 4 C 0.074 3.926 5 S 2.741 3.259 6 O -0.974 6.974 7 O -0.984 6.984 8 C -0.841 4.841 9 C 0.141 3.859 10 C -0.102 4.102 11 N -0.327 5.327 12 N -0.344 5.344 13 C 0.167 3.833 14 C 0.025 3.975 15 C -0.515 4.515 16 H 0.056 0.944 17 C 0.035 3.965 18 N -0.902 5.902 19 Si 0.963 3.037 20 H -0.276 1.276 21 H -0.276 1.276 22 H -0.274 1.274 23 C -0.198 4.198 24 C -0.200 4.200 25 C 0.207 3.793 26 C -0.136 4.136 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.136 0.864 39 H 0.064 0.936 40 H 0.273 0.727 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.113 0.887 46 H 0.121 0.879 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.023 -7.832 -7.031 19.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.015 4.015 3 N -0.837 5.837 4 C -0.071 4.071 5 S 2.829 3.171 6 O -0.964 6.964 7 O -0.975 6.975 8 C -0.939 4.939 9 C -0.028 4.028 10 C -0.160 4.160 11 N -0.148 5.148 12 N -0.120 5.120 13 C 0.047 3.953 14 C 0.024 3.976 15 C -0.553 4.553 16 H 0.074 0.926 17 C -0.167 4.167 18 N -0.539 5.539 19 Si 0.788 3.212 20 H -0.201 1.201 21 H -0.201 1.201 22 H -0.199 1.199 23 C -0.236 4.236 24 C -0.238 4.238 25 C 0.070 3.930 26 C -0.193 4.193 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.101 0.899 37 H 0.126 0.874 38 H 0.153 0.847 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.132 0.868 46 H 0.140 0.860 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.211 -7.857 -6.383 18.271 hybrid contribution 1.381 0.527 -0.056 1.480 sum -13.830 -7.330 -6.439 16.925 Atomic orbital electron populations 1.22241 0.95130 1.03565 1.02269 1.21535 0.95207 0.80263 1.04485 1.57333 1.79508 1.24757 1.22115 1.21820 1.03302 0.97096 0.84835 1.00277 0.71892 0.72349 0.72537 1.93447 1.70447 1.75583 1.56961 1.93438 1.86640 1.31585 1.85800 1.31205 1.24429 1.10357 1.27897 1.22367 0.90990 0.95185 0.94249 1.20825 0.99467 0.94303 1.01382 1.77287 1.14992 1.03845 1.18645 1.49582 1.07460 1.16660 1.38274 1.21764 0.75054 0.97142 1.01356 1.19315 0.93251 0.96484 0.88521 1.20662 0.94344 1.44290 0.95992 0.92574 1.25629 1.02267 0.93999 0.94782 1.69690 1.37015 1.42786 1.04427 0.85525 0.79666 0.78473 0.77489 1.20074 1.20117 1.19885 1.22984 0.99290 0.93928 1.07360 1.22975 1.04316 0.98466 0.98010 1.21321 0.85311 0.94414 0.91957 1.21270 1.06644 0.91164 1.00265 0.89528 0.93620 0.91385 0.88127 0.90087 0.92149 0.87892 0.90353 0.87566 0.89899 0.87355 0.84702 0.91729 0.91738 0.90622 0.91278 0.90198 0.90560 0.86848 0.86034 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 10.24 71.99 0.74 -1.61 16 2 C 0.11 1.69 6.05 86.38 0.52 2.21 16 3 N -1.00 -20.11 3.18 -539.11 -1.72 -21.82 16 4 C 0.07 1.16 10.68 127.77 1.36 2.53 16 5 S 2.74 78.17 5.68 -56.49 -0.32 77.85 16 6 O -0.97 -29.80 14.34 -128.00 -1.84 -31.64 16 7 O -0.98 -31.73 13.86 -128.00 -1.77 -33.50 16 8 C -0.84 -28.47 6.17 21.99 0.14 -28.34 16 9 C 0.14 4.93 7.21 43.10 0.31 5.24 16 10 C -0.10 -2.64 10.15 71.24 0.72 -1.92 16 11 N -0.33 -13.46 10.93 -47.38 -0.52 -13.98 16 12 N -0.34 -14.46 2.54 -334.71 -0.85 -15.31 16 13 C 0.17 7.72 5.60 86.38 0.48 8.20 16 14 C 0.03 1.26 2.31 -52.93 -0.12 1.14 16 15 C -0.52 -27.22 9.02 25.60 0.23 -26.99 16 16 H 0.06 3.00 7.83 -2.91 -0.02 2.98 16 17 C 0.03 1.75 5.28 84.65 0.45 2.20 16 18 N -0.90 -45.26 10.89 21.45 0.23 -45.03 16 19 Si 0.96 40.42 29.55 68.60 2.03 42.45 16 20 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 21 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 23 C -0.20 -9.36 9.64 30.59 0.30 -9.06 16 24 C -0.20 -9.46 9.61 30.59 0.29 -9.16 16 25 C 0.21 7.69 5.66 41.40 0.23 7.92 16 26 C -0.14 -4.42 9.12 71.23 0.65 -3.77 16 27 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 1.08 8.11 -2.39 -0.02 1.06 16 31 H 0.08 1.28 7.61 -2.39 -0.02 1.26 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 1.02 8.07 -2.38 -0.02 1.00 16 34 H 0.08 1.33 7.02 -2.39 -0.02 1.32 16 35 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.11 2.79 5.66 -2.39 -0.01 2.78 16 38 H 0.14 6.38 5.27 -2.38 -0.01 6.37 16 39 H 0.06 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.27 12.93 8.32 -92.71 -0.77 12.16 16 41 H 0.08 3.59 8.14 -2.39 -0.02 3.58 16 42 H 0.07 3.17 5.75 -2.39 -0.01 3.15 16 43 H 0.08 3.78 6.04 -2.39 -0.01 3.76 16 44 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 45 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 46 H 0.12 3.80 5.55 -2.39 -0.01 3.78 16 47 H 0.08 2.91 7.15 -2.38 -0.02 2.89 16 Total: -1.00 -63.90 382.80 2.53 -61.37 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.97 Total: 31.02 kcal Atomic # 6 Polarization: -57.71 SS G_CDS: 6.31 Total: -51.40 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -2.85 Total: -96.14 kcal Atomic # 8 Polarization: -61.53 SS G_CDS: -3.61 Total: -65.13 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Atomic # 16 Polarization: 78.17 SS G_CDS: -0.32 Total: 77.85 kcal Total: -63.90 2.53 -61.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596251995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.501 kcal (2) G-P(sol) polarization free energy of solvation -63.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds