Wall clock time and date at job start Wed Apr 1 2020 00:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47006 * 2 1 4 4 C 1.38200 * 119.51645 * 89.99468 * 3 2 1 5 5 N 1.31485 * 131.76099 * 0.02562 * 4 3 2 6 6 N 1.28534 * 109.89638 * 179.97438 * 5 4 3 7 7 C 1.30445 * 110.10954 * 0.02562 * 6 5 4 8 8 C 1.50699 * 126.42853 * 180.02562 * 7 6 5 9 9 N 1.46896 * 109.47078 * 262.88978 * 8 7 6 10 10 C 1.46903 * 110.99644 * 179.97438 * 9 8 7 11 11 H 1.08993 * 109.47304 * 35.00078 * 10 9 8 12 12 C 1.52999 * 109.47050 * 274.99760 * 10 9 8 13 13 C 1.50706 * 109.46822 * 154.99750 * 10 9 8 14 14 H 1.07996 * 119.99918 * 0.02562 * 13 10 9 15 15 C 1.37873 * 119.99803 * 179.97438 * 13 10 9 16 16 N 1.31510 * 120.00141 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99996 * 180.02562 * 15 13 10 18 18 H 1.48493 * 109.47069 * 59.99914 * 17 15 13 19 19 H 1.48494 * 109.47105 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46954 * 300.00232 * 17 15 13 21 21 N 1.36469 * 121.46074 * 179.97438 * 4 3 2 22 22 C 1.38916 * 120.92393 * 0.02562 * 21 4 3 23 23 C 1.38661 * 121.31994 * 179.97438 * 22 21 4 24 24 C 1.38069 * 119.87752 * 180.02562 * 23 22 21 25 25 C 1.38615 * 120.59510 * 0.02562 * 24 23 22 26 26 C 1.37886 * 120.34670 * 0.02562 * 25 24 23 27 27 C 1.39362 * 119.60713 * 359.97428 * 26 25 24 28 28 C 1.34939 * 119.50768 * 270.28709 * 3 2 1 29 29 O 1.21640 * 120.57512 * 0.02562 * 28 3 2 30 30 H 1.08998 * 109.46658 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47117 * 300.00452 * 1 2 3 32 32 H 1.09000 * 109.46556 * 60.01046 * 1 2 3 33 33 H 1.08990 * 109.47829 * 239.99143 * 2 1 3 34 34 H 1.09005 * 109.46982 * 119.99117 * 2 1 3 35 35 H 1.09004 * 109.46796 * 22.89221 * 8 7 6 36 36 H 1.09003 * 109.46885 * 142.88304 * 8 7 6 37 37 H 1.00895 * 111.00034 * 56.04179 * 9 8 7 38 38 H 1.08999 * 109.47071 * 180.02562 * 12 10 9 39 39 H 1.09001 * 109.47183 * 300.00009 * 12 10 9 40 40 H 1.09000 * 109.47248 * 60.00266 * 12 10 9 41 41 H 0.97008 * 120.00321 * 179.97438 * 16 15 13 42 42 H 1.08002 * 120.06200 * 0.04398 * 23 22 21 43 43 H 1.08000 * 119.70292 * 180.02562 * 24 23 22 44 44 H 1.08009 * 119.82416 * 180.02562 * 25 24 23 45 45 H 1.08000 * 120.19512 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2452 2.0232 1.2026 5 7 2.1048 1.6252 2.4479 6 7 2.4398 2.5720 3.2501 7 6 2.8108 3.6234 2.5730 8 6 3.2760 4.9377 3.1448 9 7 2.1530 5.8842 3.1734 10 6 2.5702 7.1795 3.7268 11 1 3.5969 7.3891 3.4267 12 6 2.4845 7.1332 5.2536 13 6 1.6631 8.2642 3.2053 14 1 0.8571 8.0160 2.5307 15 6 1.8617 9.5731 3.5903 16 7 2.8429 9.8752 4.4121 17 14 0.7369 10.9175 2.9445 18 1 -0.6617 10.6314 3.3533 19 1 1.1587 12.2268 3.5037 20 1 0.8199 10.9628 1.4625 21 7 2.7003 3.3090 1.2489 22 6 2.9517 4.0197 0.0822 23 6 3.4137 5.3266 0.1196 24 6 3.6533 6.0054 -1.0585 25 6 3.4356 5.3926 -2.2827 26 6 2.9754 4.0941 -2.3396 27 6 2.7298 3.3982 -1.1575 28 6 2.2343 2.0098 -1.1743 29 8 2.0267 1.4398 -2.2286 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8901 33 1 1.8935 -0.5139 -0.8898 34 1 1.8934 -0.5137 0.8901 35 1 3.6462 4.7823 4.1582 36 1 4.0758 5.3413 2.5239 37 1 1.3735 5.5050 3.6897 38 1 2.7937 8.0944 5.6642 39 1 1.4578 6.9237 5.5537 40 1 3.1406 6.3487 5.6308 41 1 2.9828 10.7962 4.6827 42 1 3.5861 5.8125 1.0686 43 1 4.0135 7.0231 -1.0261 44 1 3.6275 5.9352 -3.1967 45 1 2.8063 3.6191 -3.2947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602867976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:07 Heat of formation + Delta-G solvation = 97.690613 kcal Electronic energy + Delta-G solvation = -30048.235338 eV Core-core repulsion = 26067.851928 eV Total energy + Delta-G solvation = -3980.383410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.68897 -40.76790 -39.04414 -36.77100 -36.35483 -35.17582 -33.12994 -32.11624 -30.97378 -30.33607 -30.14707 -28.36790 -25.61133 -25.25442 -24.97404 -23.60394 -23.39488 -22.64398 -20.72780 -20.40913 -19.67970 -19.13252 -17.46993 -17.16746 -16.82103 -16.40530 -15.98867 -15.31114 -15.07910 -14.87102 -14.62267 -14.52387 -14.40179 -14.09853 -13.83046 -13.69362 -13.28842 -12.92172 -12.77406 -12.40278 -12.38155 -12.02911 -11.82176 -11.66397 -11.50819 -11.45408 -11.34099 -11.06489 -10.94572 -10.92283 -10.87688 -10.62115 -10.27389 -10.26133 -10.05004 -9.40423 -9.19637 -8.81858 -8.47790 -8.46515 -7.57696 -6.10320 -4.14543 0.30621 0.69050 1.61654 1.71319 2.32029 2.34167 2.79160 3.26700 3.31879 3.34832 3.53209 3.75494 3.94130 4.29938 4.37429 4.50085 4.56798 4.76622 4.80470 4.88201 4.95603 5.01026 5.12262 5.20675 5.21774 5.25797 5.38168 5.48970 5.54064 5.61520 5.76281 5.85580 5.91697 5.94809 6.01197 6.07232 6.17386 6.34613 6.49761 6.55914 6.73763 6.87411 6.92658 7.10886 7.40998 7.61613 7.71331 8.06099 8.24965 8.39082 8.51473 8.91769 9.51391 10.96369 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013128 B = 0.003563 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.325257 B = 7856.683722 C = 9069.010824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.110 3.890 3 N -0.506 5.506 4 C 0.399 3.601 5 N -0.293 5.293 6 N -0.260 5.260 7 C 0.216 3.784 8 C 0.133 3.867 9 N -0.680 5.680 10 C 0.214 3.786 11 H 0.037 0.963 12 C -0.172 4.172 13 C -0.499 4.499 14 H 0.062 0.938 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.277 1.277 21 N -0.426 5.426 22 C 0.172 3.828 23 C -0.121 4.121 24 C -0.054 4.054 25 C -0.133 4.133 26 C -0.034 4.034 27 C -0.167 4.167 28 C 0.569 3.431 29 O -0.504 6.504 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.337 0.663 38 H 0.091 0.909 39 H 0.030 0.970 40 H 0.009 0.991 41 H 0.262 0.738 42 H 0.165 0.835 43 H 0.145 0.855 44 H 0.140 0.860 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.601 -12.972 -11.403 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.011 4.011 3 N -0.235 5.235 4 C 0.046 3.954 5 N -0.140 5.140 6 N -0.097 5.097 7 C -0.051 4.051 8 C 0.002 3.998 9 N -0.312 5.312 10 C 0.107 3.893 11 H 0.055 0.945 12 C -0.231 4.231 13 C -0.537 4.537 14 H 0.080 0.920 15 C -0.142 4.142 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.203 1.203 21 N -0.116 5.116 22 C 0.076 3.924 23 C -0.140 4.140 24 C -0.073 4.073 25 C -0.151 4.151 26 C -0.053 4.053 27 C -0.173 4.173 28 C 0.360 3.640 29 O -0.377 6.377 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.154 0.846 38 H 0.110 0.890 39 H 0.050 0.950 40 H 0.028 0.972 41 H 0.072 0.928 42 H 0.182 0.818 43 H 0.163 0.837 44 H 0.158 0.842 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.326 -13.901 -11.319 18.077 hybrid contribution -0.370 1.371 -0.253 1.442 sum 1.955 -12.530 -11.572 17.168 Atomic orbital electron populations 1.22116 0.94330 1.03157 1.02975 1.21820 0.95786 0.78454 1.04994 1.44570 1.62446 1.15437 1.01091 1.21371 1.01429 0.82510 0.90117 1.74660 1.23466 1.22184 0.93655 1.74240 1.14900 0.96790 1.23777 1.25078 1.03354 0.99631 0.77005 1.20548 0.95749 0.83927 0.99583 1.61011 1.06051 1.03763 1.60376 1.19228 0.96837 0.83634 0.89569 0.94533 1.22450 0.98277 1.01986 1.00416 1.21025 1.14629 0.90643 1.27429 0.91963 1.24910 0.95541 0.98609 0.95134 1.69858 1.30537 1.19015 1.33991 0.86573 0.80997 0.80765 0.79126 1.20350 1.21402 1.20284 1.43547 1.49625 1.11541 1.06898 1.17831 0.98918 0.92928 0.82737 1.21470 0.99271 0.91293 1.01991 1.21458 0.94489 1.00259 0.91108 1.21322 1.00418 0.94630 0.98749 1.21009 0.93965 0.93750 0.96611 1.19472 1.10175 0.94587 0.93026 1.18102 0.77335 0.86099 0.82438 1.90836 1.51262 1.67200 1.28444 0.90416 0.91710 0.92076 0.88245 0.88320 0.91231 0.89085 0.84589 0.89018 0.95047 0.97238 0.92849 0.81811 0.83676 0.84242 0.83590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 10.24 37.16 0.38 -1.28 16 2 C 0.11 1.18 6.03 -4.04 -0.02 1.16 16 3 N -0.51 -6.95 2.66 -117.87 -0.31 -7.26 16 4 C 0.40 6.27 8.28 -319.07 -2.64 3.62 16 5 N -0.29 -4.97 11.99 30.29 0.36 -4.60 16 6 N -0.26 -4.59 12.18 32.98 0.40 -4.19 16 7 C 0.22 3.56 7.63 -154.08 -1.18 2.38 16 8 C 0.13 2.15 4.97 -4.98 -0.02 2.13 16 9 N -0.68 -12.84 5.95 -109.22 -0.65 -13.49 16 10 C 0.21 4.77 2.57 -68.86 -0.18 4.59 16 11 H 0.04 0.86 7.80 -51.93 -0.41 0.46 16 12 C -0.17 -3.80 8.94 37.16 0.33 -3.47 16 13 C -0.50 -12.59 8.84 -34.44 -0.30 -12.90 16 14 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 15 C 0.06 1.53 5.30 -17.82 -0.09 1.43 16 16 N -0.89 -23.83 11.32 55.43 0.63 -23.21 16 17 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 N -0.43 -6.74 3.01 -58.27 -0.18 -6.91 16 22 C 0.17 2.49 6.65 -83.67 -0.56 1.93 16 23 C -0.12 -1.63 9.46 -39.49 -0.37 -2.00 16 24 C -0.05 -0.59 10.02 -39.50 -0.40 -0.98 16 25 C -0.13 -1.23 10.03 -39.57 -0.40 -1.63 16 26 C -0.03 -0.37 9.64 -39.29 -0.38 -0.75 16 27 C -0.17 -2.24 5.88 -104.91 -0.62 -2.86 16 28 C 0.57 8.03 7.64 -12.45 -0.10 7.94 16 29 O -0.50 -7.49 16.11 5.24 0.08 -7.41 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.96 7.42 -51.93 -0.39 0.58 16 34 H 0.10 0.99 7.88 -51.93 -0.41 0.58 16 35 H 0.07 1.11 7.44 -51.93 -0.39 0.72 16 36 H 0.09 1.35 5.84 -51.93 -0.30 1.05 16 37 H 0.34 6.51 8.46 -39.29 -0.33 6.17 16 38 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 39 H 0.03 0.68 8.13 -51.93 -0.42 0.26 16 40 H 0.01 0.17 7.45 -51.93 -0.39 -0.21 16 41 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 42 H 0.16 2.42 4.40 -52.49 -0.23 2.18 16 43 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 45 H 0.15 1.35 7.76 -52.49 -0.41 0.94 16 LS Contribution 371.51 15.07 5.60 5.60 Total: -1.00 -29.13 371.51 -11.27 -40.40 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.64 Total: 6.48 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -6.55 Total: -0.69 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: 0.25 Total: -59.67 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.08 Total: -7.41 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.13 -11.27 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602867976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.091 kcal (2) G-P(sol) polarization free energy of solvation -29.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds