Wall clock time and date at job start Wed Apr 1 2020 00:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47006 * 2 1 4 4 C 1.38200 * 119.51645 * 89.99468 * 3 2 1 5 5 N 1.31485 * 131.76099 * 0.02562 * 4 3 2 6 6 N 1.28534 * 109.89638 * 179.97438 * 5 4 3 7 7 C 1.30445 * 110.10954 * 0.02562 * 6 5 4 8 8 C 1.50699 * 126.42853 * 180.02562 * 7 6 5 9 9 N 1.46896 * 109.47078 * 262.88978 * 8 7 6 10 10 C 1.46903 * 110.99644 * 179.97438 * 9 8 7 11 11 H 1.08993 * 109.47304 * 35.00078 * 10 9 8 12 12 C 1.52999 * 109.47050 * 274.99760 * 10 9 8 13 13 C 1.50706 * 109.46822 * 154.99750 * 10 9 8 14 14 H 1.07996 * 119.99918 * 0.02562 * 13 10 9 15 15 C 1.37873 * 119.99803 * 179.97438 * 13 10 9 16 16 N 1.31510 * 120.00141 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99996 * 180.02562 * 15 13 10 18 18 H 1.48493 * 109.47069 * 59.99914 * 17 15 13 19 19 H 1.48494 * 109.47105 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46954 * 300.00232 * 17 15 13 21 21 N 1.36469 * 121.46074 * 179.97438 * 4 3 2 22 22 C 1.38916 * 120.92393 * 0.02562 * 21 4 3 23 23 C 1.38661 * 121.31994 * 179.97438 * 22 21 4 24 24 C 1.38069 * 119.87752 * 180.02562 * 23 22 21 25 25 C 1.38615 * 120.59510 * 0.02562 * 24 23 22 26 26 C 1.37886 * 120.34670 * 0.02562 * 25 24 23 27 27 C 1.39362 * 119.60713 * 359.97428 * 26 25 24 28 28 C 1.34939 * 119.50768 * 270.28709 * 3 2 1 29 29 O 1.21640 * 120.57512 * 0.02562 * 28 3 2 30 30 H 1.08998 * 109.46658 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47117 * 300.00452 * 1 2 3 32 32 H 1.09000 * 109.46556 * 60.01046 * 1 2 3 33 33 H 1.08990 * 109.47829 * 239.99143 * 2 1 3 34 34 H 1.09005 * 109.46982 * 119.99117 * 2 1 3 35 35 H 1.09004 * 109.46796 * 22.89221 * 8 7 6 36 36 H 1.09003 * 109.46885 * 142.88304 * 8 7 6 37 37 H 1.00895 * 111.00034 * 56.04179 * 9 8 7 38 38 H 1.08999 * 109.47071 * 180.02562 * 12 10 9 39 39 H 1.09001 * 109.47183 * 300.00009 * 12 10 9 40 40 H 1.09000 * 109.47248 * 60.00266 * 12 10 9 41 41 H 0.97008 * 120.00321 * 179.97438 * 16 15 13 42 42 H 1.08002 * 120.06200 * 0.04398 * 23 22 21 43 43 H 1.08000 * 119.70292 * 180.02562 * 24 23 22 44 44 H 1.08009 * 119.82416 * 180.02562 * 25 24 23 45 45 H 1.08000 * 120.19512 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2452 2.0232 1.2026 5 7 2.1048 1.6252 2.4479 6 7 2.4398 2.5720 3.2501 7 6 2.8108 3.6234 2.5730 8 6 3.2760 4.9377 3.1448 9 7 2.1530 5.8842 3.1734 10 6 2.5702 7.1795 3.7268 11 1 3.5969 7.3891 3.4267 12 6 2.4845 7.1332 5.2536 13 6 1.6631 8.2642 3.2053 14 1 0.8571 8.0160 2.5307 15 6 1.8617 9.5731 3.5903 16 7 2.8429 9.8752 4.4121 17 14 0.7369 10.9175 2.9445 18 1 -0.6617 10.6314 3.3533 19 1 1.1587 12.2268 3.5037 20 1 0.8199 10.9628 1.4625 21 7 2.7003 3.3090 1.2489 22 6 2.9517 4.0197 0.0822 23 6 3.4137 5.3266 0.1196 24 6 3.6533 6.0054 -1.0585 25 6 3.4356 5.3926 -2.2827 26 6 2.9754 4.0941 -2.3396 27 6 2.7298 3.3982 -1.1575 28 6 2.2343 2.0098 -1.1743 29 8 2.0267 1.4398 -2.2286 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8901 33 1 1.8935 -0.5139 -0.8898 34 1 1.8934 -0.5137 0.8901 35 1 3.6462 4.7823 4.1582 36 1 4.0758 5.3413 2.5239 37 1 1.3735 5.5050 3.6897 38 1 2.7937 8.0944 5.6642 39 1 1.4578 6.9237 5.5537 40 1 3.1406 6.3487 5.6308 41 1 2.9828 10.7962 4.6827 42 1 3.5861 5.8125 1.0686 43 1 4.0135 7.0231 -1.0261 44 1 3.6275 5.9352 -3.1967 45 1 2.8063 3.6191 -3.2947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602867976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:06 Heat of formation + Delta-G solvation = 84.217528 kcal Electronic energy + Delta-G solvation = -30048.819575 eV Core-core repulsion = 26067.851928 eV Total energy + Delta-G solvation = -3980.967647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.89106 -41.84209 -40.02169 -38.11977 -37.69731 -36.26638 -34.79860 -33.28794 -32.12694 -31.53056 -31.15240 -29.87513 -27.23775 -26.77479 -26.07812 -24.77592 -24.49874 -23.57008 -22.17918 -21.86881 -20.77194 -20.17125 -18.64071 -18.42007 -18.24809 -17.68757 -17.07653 -16.69882 -16.51078 -16.05437 -15.87071 -15.65670 -15.44653 -15.36413 -14.94573 -14.70201 -14.61142 -14.34662 -13.91032 -13.68047 -13.56971 -13.25665 -13.18731 -12.87949 -12.81988 -12.76166 -12.57527 -12.53428 -12.38589 -12.22351 -12.13781 -12.05336 -11.99592 -11.83071 -11.40041 -11.06173 -10.44004 -10.35344 -9.85061 -9.61982 -9.15478 -8.06327 -6.16086 -0.68516 -0.31632 0.51165 0.62189 1.18348 1.24499 1.46991 1.48836 1.55467 1.63102 2.46695 2.58490 2.69858 2.83519 3.15640 3.23565 3.37213 3.58256 3.70915 3.77225 3.95269 4.04148 4.08923 4.13070 4.22300 4.30380 4.37190 4.42906 4.54507 4.67984 4.70320 4.76848 4.82988 4.94146 4.96227 5.00451 5.11114 5.11544 5.13157 5.27390 5.32634 5.37352 5.59512 5.72823 5.77158 5.82362 6.24879 6.33149 6.53436 6.61152 6.94749 7.25021 7.53120 8.98656 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013128 B = 0.003563 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.325257 B = 7856.683722 C = 9069.010824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.103 3.897 3 N -0.506 5.506 4 C 0.401 3.599 5 N -0.309 5.309 6 N -0.279 5.279 7 C 0.211 3.789 8 C 0.142 3.858 9 N -0.677 5.677 10 C 0.223 3.777 11 H 0.023 0.977 12 C -0.162 4.162 13 C -0.510 4.510 14 H 0.052 0.948 15 C 0.018 3.982 16 N -0.917 5.917 17 Si 0.951 3.049 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.270 1.270 21 N -0.427 5.427 22 C 0.146 3.854 23 C -0.135 4.135 24 C -0.052 4.052 25 C -0.112 4.112 26 C -0.030 4.030 27 C -0.182 4.182 28 C 0.567 3.433 29 O -0.514 6.514 30 H 0.105 0.895 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.334 0.666 38 H 0.065 0.935 39 H 0.027 0.973 40 H 0.029 0.971 41 H 0.261 0.739 42 H 0.148 0.852 43 H 0.165 0.835 44 H 0.181 0.819 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.654 -12.882 -13.625 18.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.016 4.016 3 N -0.236 5.236 4 C 0.047 3.953 5 N -0.156 5.156 6 N -0.117 5.117 7 C -0.056 4.056 8 C 0.011 3.989 9 N -0.308 5.308 10 C 0.115 3.885 11 H 0.041 0.959 12 C -0.222 4.222 13 C -0.549 4.549 14 H 0.071 0.929 15 C -0.181 4.181 16 N -0.557 5.557 17 Si 0.778 3.222 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.195 1.195 21 N -0.117 5.117 22 C 0.051 3.949 23 C -0.155 4.155 24 C -0.071 4.071 25 C -0.130 4.130 26 C -0.049 4.049 27 C -0.187 4.187 28 C 0.359 3.641 29 O -0.389 6.389 30 H 0.124 0.876 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.151 0.849 38 H 0.084 0.916 39 H 0.046 0.954 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.165 0.835 43 H 0.183 0.817 44 H 0.198 0.802 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.379 -13.827 -13.563 19.514 hybrid contribution -0.364 1.313 0.336 1.403 sum 2.015 -12.514 -13.227 18.320 Atomic orbital electron populations 1.22068 0.93638 1.04576 1.01529 1.22079 0.96346 0.77262 1.05920 1.44802 1.62148 1.16240 1.00380 1.21507 1.00748 0.82638 0.90427 1.74577 1.24461 1.22364 0.94186 1.74169 1.15560 0.97348 1.24590 1.24932 1.03736 0.99401 0.77527 1.20493 0.94961 0.83351 1.00130 1.60832 1.06847 1.03289 1.59810 1.18963 0.95426 0.84581 0.89520 0.95877 1.22300 0.98392 1.01202 1.00278 1.21279 1.14671 0.91732 1.27181 0.92932 1.25539 0.96684 1.00446 0.95415 1.69970 1.31704 1.19213 1.34857 0.85716 0.79152 0.78446 0.78877 1.20557 1.21301 1.19520 1.43603 1.49286 1.11700 1.07101 1.18049 1.00792 0.93524 0.82538 1.21456 1.00380 0.91191 1.02474 1.21779 0.93543 1.00992 0.90760 1.21752 0.97747 0.93873 0.99612 1.21357 0.92985 0.94233 0.96348 1.19673 1.10974 0.94499 0.93568 1.18284 0.77098 0.86456 0.82301 1.90821 1.51937 1.67571 1.28549 0.87601 0.93471 0.93009 0.86942 0.87711 0.90823 0.87868 0.84904 0.91605 0.95398 0.95153 0.92998 0.83503 0.81708 0.80154 0.81744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 10.24 71.98 0.74 -2.31 16 2 C 0.10 2.14 6.03 86.38 0.52 2.66 16 3 N -0.51 -13.73 2.66 -644.99 -1.71 -15.44 16 4 C 0.40 12.66 8.28 260.18 2.16 14.81 16 5 N -0.31 -10.60 11.99 -58.09 -0.70 -11.30 16 6 N -0.28 -10.00 12.18 -49.58 -0.60 -10.61 16 7 C 0.21 7.05 7.63 137.66 1.05 8.10 16 8 C 0.14 4.59 4.97 85.56 0.42 5.02 16 9 N -0.68 -25.71 5.95 -499.46 -2.97 -28.68 16 10 C 0.22 9.99 2.57 44.17 0.11 10.10 16 11 H 0.02 1.11 7.80 -2.39 -0.02 1.09 16 12 C -0.16 -7.21 8.94 71.98 0.64 -6.56 16 13 C -0.51 -25.82 8.84 25.60 0.23 -25.59 16 14 H 0.05 2.72 7.81 -2.91 -0.02 2.69 16 15 C 0.02 0.93 5.30 84.65 0.45 1.38 16 16 N -0.92 -49.09 11.32 21.45 0.24 -48.85 16 17 Si 0.95 41.34 29.54 68.60 2.03 43.37 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 19 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 21 N -0.43 -13.60 3.01 -338.27 -1.02 -14.62 16 22 C 0.15 4.17 6.65 38.66 0.26 4.42 16 23 C -0.14 -3.54 9.46 22.33 0.21 -3.33 16 24 C -0.05 -1.00 10.02 22.32 0.22 -0.77 16 25 C -0.11 -1.66 10.03 22.28 0.22 -1.44 16 26 C -0.03 -0.56 9.64 22.46 0.22 -0.35 16 27 C -0.18 -4.66 5.88 -20.05 -0.12 -4.78 16 28 C 0.57 15.51 7.64 86.64 0.66 16.17 16 29 O -0.51 -14.61 16.11 -4.16 -0.07 -14.68 16 30 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.11 2.04 7.42 -2.39 -0.02 2.02 16 34 H 0.10 2.03 7.88 -2.38 -0.02 2.01 16 35 H 0.07 2.33 7.44 -2.39 -0.02 2.31 16 36 H 0.10 3.09 5.84 -2.39 -0.01 3.07 16 37 H 0.33 13.02 8.46 -89.70 -0.76 12.26 16 38 H 0.07 3.29 6.07 -2.39 -0.01 3.28 16 39 H 0.03 1.21 8.13 -2.39 -0.02 1.19 16 40 H 0.03 1.18 7.45 -2.39 -0.02 1.16 16 41 H 0.26 13.47 8.31 -92.70 -0.77 12.70 16 42 H 0.15 4.33 4.40 -2.91 -0.01 4.32 16 43 H 0.17 2.48 8.06 -2.91 -0.02 2.45 16 44 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 45 H 0.17 2.48 7.76 -2.91 -0.02 2.45 16 Total: -1.00 -62.79 371.51 3.48 -59.30 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.29 Total: 23.97 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 8.00 Total: 17.53 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -6.76 Total: -129.50 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.07 Total: -14.68 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -62.79 3.48 -59.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602867976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.521 kcal (2) G-P(sol) polarization free energy of solvation -62.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds