Wall clock time and date at job start Wed Apr 1 2020 00:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47362 * 2 1 4 4 C 1.38211 * 119.51379 * 89.99753 * 3 2 1 5 5 N 1.31479 * 131.76017 * 0.02562 * 4 3 2 6 6 N 1.28523 * 109.89619 * 179.97438 * 5 4 3 7 7 C 1.30444 * 110.11295 * 359.97438 * 6 5 4 8 8 C 1.50699 * 126.43163 * 180.02562 * 7 6 5 9 9 N 1.46899 * 109.46706 * 96.95632 * 8 7 6 10 10 C 1.46907 * 110.99851 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.46894 * 325.00565 * 10 9 8 12 12 C 1.53004 * 109.46901 * 84.99986 * 10 9 8 13 13 C 1.50692 * 109.47250 * 205.00073 * 10 9 8 14 14 H 1.07999 * 120.00373 * 0.02562 * 13 10 9 15 15 C 1.37883 * 119.99974 * 180.02562 * 13 10 9 16 16 N 1.31514 * 120.00172 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 119.99907 * 359.97438 * 15 13 10 18 18 H 1.48504 * 109.46943 * 89.99947 * 17 15 13 19 19 H 1.48498 * 109.47406 * 210.00041 * 17 15 13 20 20 H 1.48503 * 109.47178 * 330.00011 * 17 15 13 21 21 N 1.36464 * 121.45814 * 179.97438 * 4 3 2 22 22 C 1.38905 * 120.92827 * 0.02562 * 21 4 3 23 23 C 1.38673 * 121.32478 * 179.97438 * 22 21 4 24 24 C 1.38064 * 119.87921 * 180.02562 * 23 22 21 25 25 C 1.38614 * 120.59754 * 359.97438 * 24 23 22 26 26 C 1.37892 * 120.34628 * 0.02562 * 25 24 23 27 27 C 1.39360 * 119.60671 * 359.97438 * 26 25 24 28 28 C 1.34941 * 119.51081 * 270.29208 * 3 2 1 29 29 O 1.21637 * 120.57294 * 0.02562 * 28 3 2 30 30 H 1.08993 * 109.47235 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46711 * 300.00471 * 1 2 3 32 32 H 1.09002 * 109.47076 * 60.00182 * 1 2 3 33 33 H 1.09001 * 109.46711 * 239.99529 * 2 1 3 34 34 H 1.09000 * 109.46923 * 120.00345 * 2 1 3 35 35 H 1.08993 * 109.46952 * 216.95406 * 8 7 6 36 36 H 1.08994 * 109.46851 * 336.96321 * 8 7 6 37 37 H 1.00902 * 111.00406 * 56.05379 * 9 8 7 38 38 H 1.08996 * 109.47102 * 300.00817 * 12 10 9 39 39 H 1.09007 * 109.46564 * 60.00138 * 12 10 9 40 40 H 1.08999 * 109.47026 * 179.97438 * 12 10 9 41 41 H 0.96999 * 119.99996 * 180.02562 * 16 15 13 42 42 H 1.07997 * 120.05730 * 0.03478 * 23 22 21 43 43 H 1.08004 * 119.69863 * 180.02562 * 24 23 22 44 44 H 1.07998 * 119.82508 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.19636 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2453 2.0231 1.2028 5 7 2.1050 1.6250 2.4480 6 7 2.4400 2.5716 3.2502 7 6 2.8121 3.6227 2.5732 8 6 3.2778 4.9369 3.1451 9 7 4.7462 4.9648 3.1752 10 6 5.2374 6.2344 3.7276 11 1 4.5721 7.0434 3.4258 12 6 5.2731 6.1462 5.2547 13 6 6.6255 6.5049 3.2074 14 1 7.0958 5.8041 2.5335 15 6 7.2954 7.6472 3.5918 16 7 8.5067 7.8835 3.1374 17 14 6.4817 8.8596 4.7568 18 1 6.8089 8.4947 6.1586 19 1 6.9797 10.2295 4.4727 20 1 5.0097 8.8185 4.5652 21 7 2.7005 3.3088 1.2491 22 6 2.9519 4.0195 0.0824 23 6 3.4140 5.3265 0.1199 24 6 3.6536 6.0053 -1.0582 25 6 3.4369 5.3923 -2.2824 26 6 2.9776 4.0933 -2.3394 27 6 2.7320 3.3974 -1.1573 28 6 2.2343 2.0098 -1.1743 29 8 2.0266 1.4398 -2.2286 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.9115 5.7538 2.5235 36 1 2.8914 5.0495 4.1580 37 1 5.1300 4.7978 2.2571 38 1 4.2690 5.9504 5.6309 39 1 5.9383 5.3371 5.5564 40 1 5.6380 7.0880 5.6645 41 1 8.9780 8.6869 3.4081 42 1 3.5863 5.8123 1.0689 43 1 4.0139 7.0230 -1.0256 44 1 3.6280 5.9351 -3.1963 45 1 2.8092 3.6182 -3.2945 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602867979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:10 Heat of formation + Delta-G solvation = 107.371825 kcal Electronic energy + Delta-G solvation = -30100.717222 eV Core-core repulsion = 26120.753621 eV Total energy + Delta-G solvation = -3979.963602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.78996 -40.85818 -39.19965 -36.86797 -36.56420 -35.28561 -33.16874 -32.19514 -31.17110 -30.66041 -30.28361 -29.01657 -26.02158 -25.34359 -24.92781 -23.72681 -23.47454 -22.78003 -20.82789 -20.15781 -19.81491 -19.26907 -17.53715 -17.28511 -17.13201 -16.62942 -16.13241 -15.74164 -15.40605 -15.16113 -14.70924 -14.59073 -14.27462 -14.06603 -13.94971 -13.83156 -13.74555 -13.03755 -12.95129 -12.50718 -12.47908 -12.38468 -12.21722 -11.83478 -11.64647 -11.60873 -11.43647 -11.35768 -11.17600 -11.01320 -10.90682 -10.73838 -10.38603 -10.23016 -9.63487 -9.57520 -9.21928 -8.95784 -8.74694 -8.54855 -7.85370 -6.22851 -4.24922 0.17858 0.52744 1.51784 1.59057 2.20801 2.24384 2.72673 3.18138 3.25928 3.29418 3.38384 3.64251 3.82012 4.16443 4.25964 4.36569 4.46557 4.62161 4.70998 4.81328 4.81988 4.86765 4.92208 5.05013 5.09400 5.13995 5.24907 5.33697 5.46927 5.49319 5.64873 5.66529 5.77472 5.86060 5.89436 5.94082 6.00125 6.19093 6.23002 6.36125 6.39760 6.53351 6.64140 6.76876 7.20938 7.32915 7.34555 7.64047 7.98643 8.40442 8.46433 8.79820 9.37446 10.89600 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.003540 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.405801 B = 7907.746904 C = 9260.837901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.109 3.891 3 N -0.505 5.505 4 C 0.402 3.598 5 N -0.291 5.291 6 N -0.243 5.243 7 C 0.213 3.787 8 C 0.135 3.865 9 N -0.669 5.669 10 C 0.185 3.815 11 H 0.005 0.995 12 C -0.141 4.141 13 C -0.525 4.525 14 H 0.079 0.921 15 C 0.075 3.925 16 N -0.893 5.893 17 Si 0.890 3.110 18 H -0.276 1.276 19 H -0.297 1.297 20 H -0.268 1.268 21 N -0.436 5.436 22 C 0.172 3.828 23 C -0.140 4.140 24 C -0.048 4.048 25 C -0.131 4.131 26 C -0.028 4.028 27 C -0.165 4.165 28 C 0.569 3.431 29 O -0.501 6.501 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.112 0.888 37 H 0.340 0.660 38 H 0.030 0.970 39 H 0.061 0.939 40 H 0.039 0.961 41 H 0.266 0.734 42 H 0.151 0.849 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.078 -6.940 -10.502 19.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.012 4.012 3 N -0.235 5.235 4 C 0.049 3.951 5 N -0.137 5.137 6 N -0.080 5.080 7 C -0.053 4.053 8 C 0.004 3.996 9 N -0.303 5.303 10 C 0.077 3.923 11 H 0.023 0.977 12 C -0.198 4.198 13 C -0.563 4.563 14 H 0.097 0.903 15 C -0.128 4.128 16 N -0.531 5.531 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.225 1.225 20 H -0.193 1.193 21 N -0.127 5.127 22 C 0.076 3.924 23 C -0.160 4.160 24 C -0.067 4.067 25 C -0.150 4.150 26 C -0.047 4.047 27 C -0.170 4.170 28 C 0.360 3.640 29 O -0.374 6.374 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.130 0.870 37 H 0.159 0.841 38 H 0.049 0.951 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.169 0.831 43 H 0.165 0.835 44 H 0.161 0.839 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.331 -8.447 -9.243 19.794 hybrid contribution -0.054 2.035 -0.977 2.258 sum -15.384 -6.411 -10.220 19.550 Atomic orbital electron populations 1.22111 0.94344 1.03239 1.02787 1.21845 0.95703 0.78369 1.05246 1.44578 1.62379 1.15470 1.01031 1.21382 1.01295 0.82227 0.90189 1.74708 1.23490 1.21957 0.93580 1.74241 1.14250 0.96054 1.23429 1.24962 1.03491 1.00294 0.76580 1.20622 0.92177 0.85479 1.01342 1.60608 1.01754 1.38325 1.29596 1.19602 0.96165 0.84476 0.92072 0.97717 1.22096 0.99274 1.00558 0.97901 1.21000 0.98299 1.07333 1.29698 0.90316 1.24908 0.94581 0.97532 0.95767 1.69879 1.11823 1.27028 1.44328 0.86823 0.79954 0.79776 0.81420 1.20306 1.22465 1.19278 1.43673 1.50199 1.12011 1.06836 1.17850 0.98788 0.92705 0.83086 1.21282 1.01263 0.91915 1.01529 1.21451 0.93543 1.00627 0.91048 1.21344 1.00156 0.94721 0.98779 1.21079 0.93239 0.93610 0.96749 1.19483 1.10053 0.94640 0.92874 1.18059 0.77404 0.86038 0.82509 1.90845 1.51098 1.67097 1.28406 0.90332 0.91796 0.92145 0.88127 0.88165 0.93225 0.86970 0.84147 0.95136 0.91976 0.94222 0.92385 0.83148 0.83475 0.83939 0.83314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.24 37.16 0.38 -1.11 16 2 C 0.11 1.13 6.03 -4.04 -0.02 1.10 16 3 N -0.51 -6.68 2.66 -117.88 -0.31 -6.99 16 4 C 0.40 6.12 8.28 -319.07 -2.64 3.48 16 5 N -0.29 -4.85 11.99 30.29 0.36 -4.49 16 6 N -0.24 -4.28 12.18 32.98 0.40 -3.87 16 7 C 0.21 3.43 7.63 -154.08 -1.18 2.25 16 8 C 0.14 2.10 5.00 -4.98 -0.02 2.07 16 9 N -0.67 -12.57 6.18 -109.22 -0.68 -13.24 16 10 C 0.18 3.95 2.19 -68.86 -0.15 3.80 16 11 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 12 C -0.14 -2.92 8.89 37.16 0.33 -2.59 16 13 C -0.53 -13.57 9.17 -34.44 -0.32 -13.89 16 14 H 0.08 2.23 7.86 -52.49 -0.41 1.82 16 15 C 0.08 2.02 5.45 -17.82 -0.10 1.93 16 16 N -0.89 -25.77 13.96 55.43 0.77 -24.99 16 17 Si 0.89 20.54 24.37 -169.99 -4.14 16.39 16 18 H -0.28 -6.33 6.87 56.52 0.39 -5.94 16 19 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -5.80 6.53 56.52 0.37 -5.43 16 21 N -0.44 -6.60 3.01 -58.27 -0.18 -6.77 16 22 C 0.17 2.33 6.65 -83.67 -0.56 1.77 16 23 C -0.14 -1.72 9.16 -39.48 -0.36 -2.08 16 24 C -0.05 -0.47 10.02 -39.51 -0.40 -0.86 16 25 C -0.13 -1.11 10.03 -39.57 -0.40 -1.51 16 26 C -0.03 -0.27 9.64 -39.29 -0.38 -0.65 16 27 C -0.17 -2.08 5.88 -104.91 -0.62 -2.69 16 28 C 0.57 7.66 7.64 -12.45 -0.10 7.57 16 29 O -0.50 -7.15 16.11 5.24 0.08 -7.07 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.96 7.42 -51.93 -0.39 0.57 16 34 H 0.10 0.99 7.88 -51.93 -0.41 0.58 16 35 H 0.05 0.69 5.83 -51.93 -0.30 0.38 16 36 H 0.11 1.68 7.44 -51.93 -0.39 1.29 16 37 H 0.34 6.46 7.44 -39.29 -0.29 6.17 16 38 H 0.03 0.54 7.45 -51.93 -0.39 0.15 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.04 0.85 3.27 -51.93 -0.17 0.68 16 41 H 0.27 7.22 8.31 -40.82 -0.34 6.89 16 42 H 0.15 1.97 4.08 -52.49 -0.21 1.76 16 43 H 0.15 1.18 8.06 -52.48 -0.42 0.75 16 44 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 45 H 0.15 1.25 7.76 -52.49 -0.41 0.84 16 LS Contribution 363.17 15.07 5.47 5.47 Total: -1.00 -31.28 363.17 -10.17 -41.45 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -5.44 Total: 5.52 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -6.52 Total: -1.41 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: 0.37 Total: -60.36 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: 0.08 Total: -7.07 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.14 Total: 16.39 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.28 -10.17 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602867979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.826 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds