Wall clock time and date at job start Wed Apr 1 2020 00:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47362 * 2 1 4 4 C 1.38211 * 119.51379 * 89.99753 * 3 2 1 5 5 N 1.31479 * 131.76017 * 0.02562 * 4 3 2 6 6 N 1.28523 * 109.89619 * 179.97438 * 5 4 3 7 7 C 1.30444 * 110.11295 * 359.97438 * 6 5 4 8 8 C 1.50699 * 126.43163 * 180.02562 * 7 6 5 9 9 N 1.46899 * 109.46706 * 96.95632 * 8 7 6 10 10 C 1.46907 * 110.99851 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.46894 * 325.00565 * 10 9 8 12 12 C 1.53004 * 109.46901 * 84.99986 * 10 9 8 13 13 C 1.50692 * 109.47250 * 205.00073 * 10 9 8 14 14 H 1.07999 * 120.00373 * 0.02562 * 13 10 9 15 15 C 1.37883 * 119.99974 * 180.02562 * 13 10 9 16 16 N 1.31514 * 120.00172 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 119.99907 * 359.97438 * 15 13 10 18 18 H 1.48504 * 109.46943 * 89.99947 * 17 15 13 19 19 H 1.48498 * 109.47406 * 210.00041 * 17 15 13 20 20 H 1.48503 * 109.47178 * 330.00011 * 17 15 13 21 21 N 1.36464 * 121.45814 * 179.97438 * 4 3 2 22 22 C 1.38905 * 120.92827 * 0.02562 * 21 4 3 23 23 C 1.38673 * 121.32478 * 179.97438 * 22 21 4 24 24 C 1.38064 * 119.87921 * 180.02562 * 23 22 21 25 25 C 1.38614 * 120.59754 * 359.97438 * 24 23 22 26 26 C 1.37892 * 120.34628 * 0.02562 * 25 24 23 27 27 C 1.39360 * 119.60671 * 359.97438 * 26 25 24 28 28 C 1.34941 * 119.51081 * 270.29208 * 3 2 1 29 29 O 1.21637 * 120.57294 * 0.02562 * 28 3 2 30 30 H 1.08993 * 109.47235 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46711 * 300.00471 * 1 2 3 32 32 H 1.09002 * 109.47076 * 60.00182 * 1 2 3 33 33 H 1.09001 * 109.46711 * 239.99529 * 2 1 3 34 34 H 1.09000 * 109.46923 * 120.00345 * 2 1 3 35 35 H 1.08993 * 109.46952 * 216.95406 * 8 7 6 36 36 H 1.08994 * 109.46851 * 336.96321 * 8 7 6 37 37 H 1.00902 * 111.00406 * 56.05379 * 9 8 7 38 38 H 1.08996 * 109.47102 * 300.00817 * 12 10 9 39 39 H 1.09007 * 109.46564 * 60.00138 * 12 10 9 40 40 H 1.08999 * 109.47026 * 179.97438 * 12 10 9 41 41 H 0.96999 * 119.99996 * 180.02562 * 16 15 13 42 42 H 1.07997 * 120.05730 * 0.03478 * 23 22 21 43 43 H 1.08004 * 119.69863 * 180.02562 * 24 23 22 44 44 H 1.07998 * 119.82508 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.19636 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2453 2.0231 1.2028 5 7 2.1050 1.6250 2.4480 6 7 2.4400 2.5716 3.2502 7 6 2.8121 3.6227 2.5732 8 6 3.2778 4.9369 3.1451 9 7 4.7462 4.9648 3.1752 10 6 5.2374 6.2344 3.7276 11 1 4.5721 7.0434 3.4258 12 6 5.2731 6.1462 5.2547 13 6 6.6255 6.5049 3.2074 14 1 7.0958 5.8041 2.5335 15 6 7.2954 7.6472 3.5918 16 7 8.5067 7.8835 3.1374 17 14 6.4817 8.8596 4.7568 18 1 6.8089 8.4947 6.1586 19 1 6.9797 10.2295 4.4727 20 1 5.0097 8.8185 4.5652 21 7 2.7005 3.3088 1.2491 22 6 2.9519 4.0195 0.0824 23 6 3.4140 5.3265 0.1199 24 6 3.6536 6.0053 -1.0582 25 6 3.4369 5.3923 -2.2824 26 6 2.9776 4.0933 -2.3394 27 6 2.7320 3.3974 -1.1573 28 6 2.2343 2.0098 -1.1743 29 8 2.0266 1.4398 -2.2286 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.9115 5.7538 2.5235 36 1 2.8914 5.0495 4.1580 37 1 5.1300 4.7978 2.2571 38 1 4.2690 5.9504 5.6309 39 1 5.9383 5.3371 5.5564 40 1 5.6380 7.0880 5.6645 41 1 8.9780 8.6869 3.4081 42 1 3.5863 5.8123 1.0689 43 1 4.0139 7.0230 -1.0256 44 1 3.6280 5.9351 -3.1963 45 1 2.8092 3.6182 -3.2945 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602867979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:09 Heat of formation + Delta-G solvation = 89.936648 kcal Electronic energy + Delta-G solvation = -30101.473268 eV Core-core repulsion = 26120.753621 eV Total energy + Delta-G solvation = -3980.719648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.93926 -41.88113 -40.12212 -38.24267 -37.76161 -36.32672 -34.82353 -33.43424 -32.39474 -31.72592 -31.22594 -30.39244 -27.48178 -26.72738 -26.14419 -24.84382 -24.55273 -23.63673 -21.96105 -21.81747 -20.85891 -20.25216 -18.95552 -18.55299 -18.36699 -17.80201 -17.32291 -17.05292 -16.50276 -16.06654 -15.96754 -15.64444 -15.55570 -15.42546 -15.03511 -14.95484 -14.72665 -14.63206 -14.01821 -13.95509 -13.71388 -13.44979 -13.21110 -13.01466 -12.90381 -12.83640 -12.62607 -12.60292 -12.48109 -12.25168 -12.14403 -12.03901 -11.96467 -11.47021 -11.40243 -11.08566 -10.75922 -10.44954 -9.91263 -9.69107 -9.32306 -8.28597 -6.34544 -0.74776 -0.40281 0.45903 0.54478 1.15021 1.19707 1.38034 1.39863 1.50873 1.60020 2.33845 2.50137 2.64654 2.76816 3.06629 3.07602 3.35316 3.41347 3.50710 3.71001 3.92596 3.96689 4.04004 4.06388 4.16012 4.28644 4.30923 4.36321 4.43942 4.60154 4.64042 4.69110 4.70305 4.74334 4.84727 4.87797 4.96555 5.01900 5.06187 5.11792 5.19747 5.24036 5.47435 5.52599 5.61214 5.71784 5.89213 6.29796 6.33591 6.51853 6.74622 7.24539 7.31840 8.87392 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.003540 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.405801 B = 7907.746904 C = 9260.837901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.101 3.899 3 N -0.506 5.506 4 C 0.403 3.597 5 N -0.309 5.309 6 N -0.268 5.268 7 C 0.208 3.792 8 C 0.140 3.860 9 N -0.677 5.677 10 C 0.191 3.809 11 H 0.019 0.981 12 C -0.141 4.141 13 C -0.523 4.523 14 H 0.038 0.962 15 C 0.020 3.980 16 N -0.944 5.944 17 Si 0.949 3.051 18 H -0.273 1.273 19 H -0.301 1.301 20 H -0.238 1.238 21 N -0.436 5.436 22 C 0.147 3.853 23 C -0.151 4.151 24 C -0.046 4.046 25 C -0.112 4.112 26 C -0.025 4.025 27 C -0.180 4.180 28 C 0.566 3.434 29 O -0.513 6.513 30 H 0.104 0.896 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.122 0.878 37 H 0.335 0.665 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.035 0.965 41 H 0.267 0.733 42 H 0.140 0.860 43 H 0.168 0.832 44 H 0.183 0.817 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.888 -5.901 -11.377 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.018 4.018 3 N -0.235 5.235 4 C 0.049 3.951 5 N -0.156 5.156 6 N -0.105 5.105 7 C -0.059 4.059 8 C 0.009 3.991 9 N -0.310 5.310 10 C 0.083 3.917 11 H 0.037 0.963 12 C -0.198 4.198 13 C -0.561 4.561 14 H 0.056 0.944 15 C -0.179 4.179 16 N -0.584 5.584 17 Si 0.776 3.224 18 H -0.199 1.199 19 H -0.229 1.229 20 H -0.161 1.161 21 N -0.127 5.127 22 C 0.051 3.949 23 C -0.171 4.171 24 C -0.065 4.065 25 C -0.130 4.130 26 C -0.044 4.044 27 C -0.186 4.186 28 C 0.358 3.642 29 O -0.387 6.387 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.090 0.910 36 H 0.140 0.860 37 H 0.154 0.846 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.158 0.842 43 H 0.186 0.814 44 H 0.200 0.800 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -17.174 -7.429 -10.131 21.278 hybrid contribution 0.545 1.637 -0.878 1.936 sum -16.629 -5.791 -11.009 20.766 Atomic orbital electron populations 1.22052 0.93154 1.04637 1.01721 1.22091 0.96694 0.77235 1.05781 1.44812 1.62114 1.16221 1.00380 1.21513 1.00680 0.82443 0.90445 1.74614 1.24604 1.22189 0.94184 1.74161 1.15227 0.96689 1.24383 1.24934 1.03655 1.00162 0.77100 1.20650 0.89966 0.86000 1.02445 1.60501 1.04027 1.36999 1.29469 1.19430 0.93736 0.85965 0.92604 0.96332 1.22054 1.00915 0.99758 0.97093 1.21252 1.00264 1.06164 1.28460 0.94394 1.25736 0.94983 0.99609 0.97526 1.70031 1.13812 1.27999 1.46537 0.85858 0.80621 0.76852 0.79084 1.19932 1.22858 1.16137 1.43719 1.49797 1.12083 1.07077 1.18069 1.00702 0.93371 0.82741 1.21319 1.01960 0.91650 1.02157 1.21795 0.92558 1.01442 0.90697 1.21776 0.97532 0.93956 0.99715 1.21409 0.92395 0.94126 0.96450 1.19670 1.10924 0.94449 0.93521 1.18274 0.77142 0.86471 0.82324 1.90829 1.51827 1.67524 1.28546 0.87721 0.93099 0.92784 0.87182 0.87973 0.90957 0.86011 0.84646 0.91859 0.93464 0.94687 0.92446 0.84218 0.81407 0.80018 0.81605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 10.24 71.98 0.74 -1.97 16 2 C 0.10 2.06 6.03 86.38 0.52 2.58 16 3 N -0.51 -13.33 2.66 -645.00 -1.71 -15.04 16 4 C 0.40 12.37 8.28 260.18 2.16 14.53 16 5 N -0.31 -10.45 11.99 -58.09 -0.70 -11.15 16 6 N -0.27 -9.46 12.18 -49.58 -0.60 -10.07 16 7 C 0.21 6.67 7.63 137.66 1.05 7.72 16 8 C 0.14 4.17 5.00 85.56 0.43 4.60 16 9 N -0.68 -25.02 6.18 -499.47 -3.09 -28.11 16 10 C 0.19 7.91 2.19 44.17 0.10 8.01 16 11 H 0.02 0.75 6.86 -2.38 -0.02 0.73 16 12 C -0.14 -5.53 8.89 71.98 0.64 -4.89 16 13 C -0.52 -27.31 9.17 25.60 0.23 -27.07 16 14 H 0.04 2.24 7.86 -2.91 -0.02 2.21 16 15 C 0.02 1.07 5.45 84.66 0.46 1.53 16 16 N -0.94 -55.70 13.96 21.45 0.30 -55.40 16 17 Si 0.95 41.31 24.37 68.60 1.67 42.99 16 18 H -0.27 -11.68 6.87 99.48 0.68 -11.00 16 19 H -0.30 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.24 -9.15 6.53 99.48 0.65 -8.50 16 21 N -0.44 -13.19 3.01 -338.26 -1.02 -14.21 16 22 C 0.15 3.88 6.65 38.66 0.26 4.14 16 23 C -0.15 -3.53 9.16 22.33 0.20 -3.32 16 24 C -0.05 -0.79 10.02 22.32 0.22 -0.56 16 25 C -0.11 -1.49 10.03 22.28 0.22 -1.27 16 26 C -0.02 -0.43 9.64 22.46 0.22 -0.21 16 27 C -0.18 -4.36 5.88 -20.05 -0.12 -4.48 16 28 C 0.57 14.94 7.64 86.64 0.66 15.60 16 29 O -0.51 -14.17 16.11 -4.15 -0.07 -14.23 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.11 2.02 7.42 -2.39 -0.02 2.00 16 34 H 0.10 2.02 7.88 -2.39 -0.02 2.00 16 35 H 0.07 1.85 5.83 -2.39 -0.01 1.84 16 36 H 0.12 3.38 7.44 -2.39 -0.02 3.37 16 37 H 0.34 12.90 7.44 -89.69 -0.67 12.23 16 38 H 0.06 2.06 7.45 -2.39 -0.02 2.04 16 39 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.03 1.40 3.27 -2.39 -0.01 1.39 16 41 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 42 H 0.14 3.52 4.08 -2.91 -0.01 3.51 16 43 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 44 H 0.18 1.04 8.06 -2.91 -0.02 1.02 16 45 H 0.17 2.30 7.76 -2.91 -0.02 2.28 16 Total: -1.00 -69.48 363.17 3.09 -66.39 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.31 Total: 23.91 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 7.99 Total: 14.93 kcal Atomic # 7 Polarization: -127.16 SS G_CDS: -6.82 Total: -133.98 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.07 Total: -14.23 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 1.67 Total: 42.99 kcal Total: -69.48 3.09 -66.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602867979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.323 kcal (2) G-P(sol) polarization free energy of solvation -69.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds