Wall clock time and date at job start Wed Apr 1 2020 00:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46819 * 2 1 4 4 C 1.50704 * 109.46926 * 240.00446 * 2 1 3 5 5 O 1.21292 * 119.99944 * 264.60658 * 4 2 1 6 6 N 1.34781 * 120.00086 * 84.61343 * 4 2 1 7 7 C 1.46531 * 124.97973 * 354.86652 * 6 4 2 8 8 C 1.53737 * 105.20032 * 179.97438 * 7 6 4 9 9 C 1.51216 * 104.58137 * 359.97438 * 8 7 6 10 10 C 1.38182 * 130.97593 * 180.02562 * 9 8 7 11 11 C 1.38227 * 120.15573 * 179.97438 * 10 9 8 12 12 C 1.38302 * 119.82349 * 359.97438 * 11 10 9 13 13 C 1.37837 * 120.22192 * 0.02562 * 12 11 10 14 14 C 1.38561 * 108.55687 * 0.02562 * 9 8 7 15 15 N 1.46498 * 109.47239 * 120.00614 * 2 1 3 16 16 C 1.35317 * 125.86619 * 34.99707 * 15 2 1 17 17 C 1.35348 * 106.16964 * 180.02562 * 16 15 2 18 18 C 1.50709 * 126.74726 * 180.02562 * 17 16 15 19 19 N 1.46499 * 109.46831 * 94.99873 * 18 17 16 20 20 C 1.36942 * 119.99764 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99694 * 0.02562 * 20 19 18 22 22 C 1.38807 * 119.99749 * 179.97438 * 20 19 18 23 23 N 1.31620 * 120.00416 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99883 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47115 * 89.99850 * 24 22 20 26 26 H 1.48495 * 109.47056 * 210.00223 * 24 22 20 27 27 H 1.48502 * 109.46854 * 330.00023 * 24 22 20 28 28 N 1.33767 * 106.50342 * 0.02562 * 17 16 15 29 29 N 1.28643 * 108.88347 * 359.73408 * 28 17 16 30 30 H 1.09008 * 109.47295 * 54.53721 * 1 2 3 31 31 H 1.09003 * 109.47421 * 174.53250 * 1 2 3 32 32 H 1.08995 * 109.47177 * 294.53566 * 1 2 3 33 33 H 1.09000 * 110.29704 * 61.03668 * 7 6 4 34 34 H 1.09003 * 110.29635 * 298.89850 * 7 6 4 35 35 H 1.09001 * 110.41115 * 241.22764 * 8 7 6 36 36 H 1.08995 * 110.42031 * 118.77589 * 8 7 6 37 37 H 1.08007 * 119.92371 * 359.95549 * 10 9 8 38 38 H 1.07994 * 120.08727 * 180.02562 * 11 10 9 39 39 H 1.07996 * 119.88671 * 179.97438 * 12 11 10 40 40 H 1.08004 * 119.85198 * 179.97438 * 13 12 11 41 41 H 1.07997 * 126.91466 * 359.97438 * 16 15 2 42 42 H 1.09000 * 109.46787 * 214.99302 * 18 17 16 43 43 H 1.08996 * 109.46922 * 334.99800 * 18 17 16 44 44 H 0.96998 * 120.00607 * 0.02562 * 19 18 17 45 45 H 0.97000 * 119.99971 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.3275 -1.8854 -1.1744 6 7 2.1536 -0.0398 -2.3934 7 6 1.7303 1.3458 -2.6122 8 6 2.0773 1.6464 -4.0795 9 6 2.6917 0.3647 -4.5956 10 6 3.1933 0.0376 -5.8410 11 6 3.7122 -1.2227 -6.0714 12 6 3.7288 -2.1567 -5.0516 13 6 3.2295 -1.8349 -3.8078 14 6 2.7028 -0.5642 -3.5676 15 7 2.0184 -0.6907 1.1961 16 6 1.4357 -1.7589 1.7882 17 6 2.2125 -2.0705 2.8518 18 6 1.9880 -3.1904 3.8351 19 7 2.7597 -4.3651 3.4219 20 6 2.7125 -5.5124 4.1680 21 1 2.1060 -5.5513 5.0608 22 6 3.4432 -6.6256 3.7761 23 7 4.1819 -6.5783 2.6878 24 14 3.3783 -8.1910 4.7935 25 1 2.2725 -9.0534 4.3048 26 1 4.6667 -8.9181 4.6658 27 1 3.1439 -7.8457 6.2187 28 7 3.2187 -1.1891 2.8588 29 7 3.0776 -0.3884 1.8619 30 1 -0.3634 0.5963 -0.8371 31 1 -0.3634 -1.0230 -0.0979 32 1 -0.3633 0.4267 0.9348 33 1 2.2762 2.0171 -1.9493 34 1 0.6568 1.4434 -2.4501 35 1 2.7961 2.4636 -4.1404 36 1 1.1756 1.8894 -4.6414 37 1 3.1796 0.7683 -6.6362 38 1 4.1043 -1.4770 -7.0450 39 1 4.1336 -3.1418 -5.2307 40 1 3.2451 -2.5690 -3.0158 41 1 0.5322 -2.2612 1.4754 42 1 2.3115 -2.8736 4.8266 43 1 0.9280 -3.4430 3.8621 44 1 3.3046 -4.3300 2.6202 45 1 4.6922 -7.3563 2.4138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603173559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:09 Heat of formation + Delta-G solvation = 127.519296 kcal Electronic energy + Delta-G solvation = -28943.078810 eV Core-core repulsion = 24963.988868 eV Total energy + Delta-G solvation = -3979.089942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.05067 -41.55846 -39.21799 -36.79705 -35.66906 -34.56498 -32.79433 -31.96329 -31.08912 -29.96504 -29.80654 -29.42612 -26.21489 -25.39682 -23.94358 -23.61445 -22.73843 -21.98216 -21.45412 -20.79927 -19.80798 -18.01009 -17.52972 -17.07345 -16.77252 -16.57450 -15.99051 -15.85404 -15.17174 -14.82299 -14.68110 -14.55265 -14.25683 -13.96745 -13.64125 -13.52178 -13.25760 -13.12213 -13.05463 -12.90058 -12.79085 -12.58449 -12.41963 -12.33939 -11.97873 -11.82230 -11.31231 -11.22279 -10.84081 -10.74920 -10.64414 -10.50988 -10.42601 -10.02283 -9.78219 -9.64687 -9.08981 -8.80992 -8.76006 -8.18020 -6.82926 -5.64728 -2.94826 0.90525 1.09773 1.59044 2.03537 2.17890 2.54042 2.96817 3.49334 3.51096 3.55252 3.55533 3.58174 3.95683 3.98703 4.12345 4.20551 4.42302 4.66016 4.68427 4.72928 4.75205 4.85201 4.88238 4.96633 4.99853 5.13870 5.26559 5.28519 5.31870 5.33986 5.37650 5.56142 5.70286 5.70778 5.85140 5.85529 6.10320 6.13951 6.26655 6.31685 6.46026 6.67828 6.71547 6.75135 6.82534 6.84646 7.47416 7.78253 8.51838 8.85419 9.63365 10.20195 10.56072 11.57784 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.002709 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.536621 B =10333.767247 C =12033.322655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.133 0.867 4 C 0.511 3.489 5 O -0.479 6.479 6 N -0.552 5.552 7 C 0.093 3.907 8 C -0.083 4.083 9 C -0.139 4.139 10 C -0.082 4.082 11 C -0.140 4.140 12 C -0.092 4.092 13 C -0.127 4.127 14 C 0.145 3.855 15 N -0.292 5.292 16 C -0.020 4.020 17 C -0.006 4.006 18 C 0.234 3.766 19 N -0.726 5.726 20 C -0.240 4.240 21 H 0.073 0.927 22 C -0.014 4.014 23 N -0.930 5.930 24 Si 0.909 3.091 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.281 1.281 28 N -0.245 5.245 29 N -0.097 5.097 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.141 0.859 41 H 0.186 0.814 42 H 0.039 0.961 43 H 0.037 0.963 44 H 0.387 0.613 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.173 22.510 -19.664 31.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.032 3.968 3 H 0.151 0.849 4 C 0.297 3.703 5 O -0.349 6.349 6 N -0.277 5.277 7 C -0.029 4.029 8 C -0.120 4.120 9 C -0.142 4.142 10 C -0.100 4.100 11 C -0.158 4.158 12 C -0.110 4.110 13 C -0.148 4.148 14 C 0.051 3.949 15 N -0.087 5.087 16 C -0.170 4.170 17 C -0.143 4.143 18 C 0.105 3.895 19 N -0.371 5.371 20 C -0.371 4.371 21 H 0.091 0.909 22 C -0.210 4.210 23 N -0.578 5.578 24 Si 0.740 3.260 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.207 1.207 28 N -0.113 5.113 29 N -0.075 5.075 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.158 0.842 41 H 0.204 0.796 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.220 0.780 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.890 22.686 -19.188 31.014 hybrid contribution -0.642 -1.551 -0.083 1.681 sum -9.532 21.135 -19.271 30.148 Atomic orbital electron populations 1.22170 0.89234 1.05351 1.05198 1.21246 0.97585 0.97387 0.80597 0.84933 1.20545 0.78910 0.87374 0.83452 1.90870 1.45762 1.14795 1.83468 1.45759 1.58692 1.14205 1.09066 1.22328 1.01170 0.81233 0.98182 1.21067 1.01649 0.96009 0.93288 1.19961 1.04663 0.95571 0.93986 1.20345 0.97985 0.96788 0.94896 1.21069 1.01738 0.93530 0.99510 1.21015 0.98038 0.99817 0.92139 1.21074 0.99915 0.95080 0.98681 1.18323 0.96808 0.94447 0.85360 1.46786 1.18680 1.22939 1.20253 1.23253 1.03825 0.92941 0.96995 1.22440 0.93013 0.99612 0.99234 1.18939 0.95559 0.82750 0.92280 1.42328 1.55133 1.08542 1.31066 1.19221 1.23113 0.89518 1.05207 0.90906 1.24773 0.99875 0.98324 0.98005 1.69700 1.33357 1.29813 1.24947 0.86165 0.76833 0.83552 0.79482 1.21779 1.21830 1.20688 1.75063 1.20425 1.03467 1.12314 1.78266 1.03460 1.22546 1.03264 0.89116 0.89970 0.89131 0.89363 0.89390 0.88852 0.88863 0.85692 0.85514 0.85202 0.84162 0.79647 0.94326 0.94519 0.77974 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 8.69 37.16 0.32 -0.70 16 2 C 0.14 1.43 3.07 -69.08 -0.21 1.22 16 3 H 0.13 0.98 7.28 -51.93 -0.38 0.60 16 4 C 0.51 6.62 7.00 -10.98 -0.08 6.54 16 5 O -0.48 -8.65 14.55 5.55 0.08 -8.57 16 6 N -0.55 -5.67 3.13 -112.90 -0.35 -6.02 16 7 C 0.09 0.48 6.47 -3.64 -0.02 0.45 16 8 C -0.08 -0.40 6.94 -27.25 -0.19 -0.59 16 9 C -0.14 -1.20 6.23 -104.27 -0.65 -1.85 16 10 C -0.08 -0.64 10.03 -39.61 -0.40 -1.04 16 11 C -0.14 -1.19 10.06 -39.56 -0.40 -1.59 16 12 C -0.09 -0.97 10.02 -39.70 -0.40 -1.37 16 13 C -0.13 -1.67 9.46 -39.21 -0.37 -2.04 16 14 C 0.14 1.69 6.62 -83.57 -0.55 1.13 16 15 N -0.29 -4.54 2.96 -55.89 -0.17 -4.71 16 16 C -0.02 -0.34 10.33 -17.05 -0.18 -0.52 16 17 C -0.01 -0.12 6.61 -82.78 -0.55 -0.67 16 18 C 0.23 5.20 6.82 -5.19 -0.04 5.17 16 19 N -0.73 -20.14 5.59 -61.08 -0.34 -20.48 16 20 C -0.24 -7.05 9.99 -15.06 -0.15 -7.20 16 21 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -29.98 13.06 55.49 0.72 -29.25 16 24 Si 0.91 23.29 29.55 -169.99 -5.02 18.27 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 28 N -0.24 -5.31 12.41 33.29 0.41 -4.90 16 29 N -0.10 -1.84 13.17 60.35 0.79 -1.05 16 30 H 0.09 0.29 6.95 -51.92 -0.36 -0.07 16 31 H 0.08 0.61 7.46 -51.93 -0.39 0.22 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.31 7.72 -51.93 -0.40 -0.09 16 34 H 0.09 0.22 6.97 -51.93 -0.36 -0.14 16 35 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.14 2.23 6.30 -52.48 -0.33 1.89 16 41 H 0.19 2.58 7.46 -52.49 -0.39 2.19 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.39 11.74 7.66 -40.82 -0.31 11.43 16 45 H 0.25 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 378.40 15.07 5.70 5.70 Total: -1.00 -40.13 378.40 -7.97 -48.10 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.85 Total: 6.47 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -3.95 Total: -3.55 kcal Atomic # 7 Polarization: -67.48 SS G_CDS: 1.07 Total: -66.41 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.08 Total: -8.57 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.02 Total: 18.27 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -40.13 -7.97 -48.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603173559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.617 kcal (2) G-P(sol) polarization free energy of solvation -40.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds